View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20942_low_10 (Length: 348)
Name: NF20942_low_10
Description: NF20942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20942_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 1906560 - 1906220
Alignment:
| Q |
1 |
ttaaccgcgattgttcgacttgtgtgtgatgctgcaaagaaatcaatgaaggagaagaaaatgtatctggctccttggaggaagagcagtttcatgcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1906560 |
ttaaccgcgattgttcgacttgtgtgtgatgctgcaaagaaatcaatgaaggagaagaaaatgtatctggctccttggaggaagagcagtttcatgcaaa |
1906461 |
T |
|
| Q |
101 |
tgaagtggtcaggtttcaatccaacatatcaccatacacaagcaagtgaatctaacatgagcttttcaggagctcctaatgcagtggtagcagtcaactg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1906460 |
tgaagtggtcaggtttcaatccaacatatcaccatacacaagcaagtgaatctaacatgagcttttcaggagctcctaatgcagtggtagcagtcaactg |
1906361 |
T |
|
| Q |
201 |
agttgtttcttccattccaattccagtggtagattttgaaggggaattttggactcaagacctcttcattagtgagtaggaatatattataaagcatagt |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1906360 |
agttgtttcttccattacaattccagtggtagattttgaaggggaattttggactcaagacctcttcattagtaagtaggaatatattataaagcatagt |
1906261 |
T |
|
| Q |
301 |
atagagcatttgcaattcattgccctttaggtcctatgtta |
341 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
1906260 |
atagagcatttgcaattcattgccctttaggtcctatgtta |
1906220 |
T |
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