View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20942_low_11 (Length: 305)

Name: NF20942_low_11
Description: NF20942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20942_low_11
NF20942_low_11
[»] chr4 (22 HSPs)
chr4 (12-291)||(19755499-19755779)
chr4 (12-291)||(19784027-19784307)
chr4 (12-291)||(23642219-23642499)
chr4 (14-291)||(15740453-15740730)
chr4 (12-291)||(47419036-47419316)
chr4 (12-291)||(1828168-1828448)
chr4 (177-291)||(47685688-47685803)
chr4 (12-291)||(54482787-54483067)
chr4 (12-124)||(5789720-5789832)
chr4 (12-291)||(48312327-48312606)
chr4 (12-74)||(23647877-23647939)
chr4 (12-112)||(2821662-2821762)
chr4 (11-112)||(55725333-55725434)
chr4 (12-124)||(19735363-19735475)
chr4 (14-142)||(46146058-46146187)
chr4 (211-288)||(42778473-42778550)
chr4 (211-288)||(53486781-53486858)
chr4 (240-288)||(20395831-20395879)
chr4 (211-288)||(18106384-18106461)
chr4 (240-280)||(4640536-4640576)
chr4 (242-286)||(29553599-29553643)
chr4 (229-269)||(35324211-35324251)
[»] chr8 (20 HSPs)
chr8 (12-291)||(41664996-41665277)
chr8 (63-291)||(13396620-13396849)
chr8 (12-291)||(8300035-8300315)
chr8 (12-291)||(7924618-7924898)
chr8 (12-291)||(9922833-9923113)
chr8 (12-288)||(32266797-32267074)
chr8 (168-291)||(172335-172459)
chr8 (12-291)||(13879115-13879395)
chr8 (12-112)||(25090799-25090899)
chr8 (12-112)||(17699892-17699992)
chr8 (12-112)||(20824711-20824811)
chr8 (12-61)||(172667-172716)
chr8 (241-286)||(12134565-12134610)
chr8 (211-288)||(17659066-17659143)
chr8 (211-288)||(23680397-23680474)
chr8 (212-265)||(28993058-28993111)
chr8 (12-99)||(43270877-43270964)
chr8 (12-112)||(42177180-42177277)
chr8 (183-291)||(25090619-25090728)
chr8 (251-291)||(13200297-13200337)
[»] chr3 (23 HSPs)
chr3 (12-291)||(34332443-34332723)
chr3 (12-291)||(2364509-2364789)
chr3 (12-291)||(10323199-10323479)
chr3 (12-291)||(19919857-19920137)
chr3 (200-291)||(7313008-7313099)
chr3 (90-291)||(40930245-40930436)
chr3 (223-291)||(7032538-7032606)
chr3 (12-112)||(17097505-17097605)
chr3 (12-112)||(48569667-48569767)
chr3 (12-142)||(3141233-3141363)
chr3 (12-112)||(15312993-15313094)
chr3 (215-275)||(31547619-31547679)
chr3 (12-111)||(16179360-16179459)
chr3 (211-288)||(26846102-26846179)
chr3 (215-280)||(44888147-44888212)
chr3 (211-288)||(47537503-47537580)
chr3 (15-291)||(962794-963071)
chr3 (211-286)||(15279802-15279877)
chr3 (243-286)||(26010284-26010327)
chr3 (211-288)||(48192034-48192111)
chr3 (183-291)||(48569838-48569947)
chr3 (240-280)||(9509997-9510037)
chr3 (240-280)||(9517972-9518012)
[»] chr5 (22 HSPs)
chr5 (12-291)||(30731942-30732222)
chr5 (12-291)||(12825431-12825711)
chr5 (12-291)||(42513952-42514232)
chr5 (12-288)||(23238619-23238895)
chr5 (12-291)||(31641743-31642023)
chr5 (12-291)||(35983419-35983699)
chr5 (12-291)||(28535303-28535583)
chr5 (12-291)||(42928363-42928643)
chr5 (12-291)||(27116801-27117069)
chr5 (12-112)||(27795895-27795996)
chr5 (12-112)||(10777196-10777296)
chr5 (15-291)||(33169890-33170167)
chr5 (12-112)||(25857052-25857152)
chr5 (14-112)||(8299812-8299910)
chr5 (211-288)||(20208547-20208624)
chr5 (183-291)||(27795715-27795824)
chr5 (229-281)||(24408170-24408222)
chr5 (229-275)||(23878398-23878444)
chr5 (211-288)||(4415528-4415605)
chr5 (242-283)||(22095109-22095150)
chr5 (12-104)||(18089392-18089483)
chr5 (12-72)||(27165578-27165638)
[»] chr1 (14 HSPs)
chr1 (12-291)||(11908733-11909013)
chr1 (12-291)||(6050835-6051115)
chr1 (12-291)||(35541281-35541561)
chr1 (215-280)||(22191613-22191678)
chr1 (12-112)||(43388777-43388877)
chr1 (12-124)||(47622705-47622817)
chr1 (180-281)||(2491454-2491556)
chr1 (200-262)||(43944291-43944353)
chr1 (215-280)||(21405081-21405146)
chr1 (230-280)||(3073993-3074043)
chr1 (188-293)||(47622881-47622987)
chr1 (211-288)||(17708214-17708291)
chr1 (211-284)||(30110753-30110826)
chr1 (240-288)||(47106538-47106586)
[»] scaffold0034 (1 HSPs)
scaffold0034 (12-291)||(105471-105751)
[»] chr7 (15 HSPs)
chr7 (12-291)||(4937756-4938036)
chr7 (12-288)||(11276876-11277157)
chr7 (12-291)||(47877215-47877495)
chr7 (12-291)||(235066-235345)
chr7 (12-291)||(17720867-17721147)
chr7 (12-288)||(29968209-29968486)
chr7 (138-291)||(37919776-37919930)
chr7 (12-115)||(37255167-37255270)
chr7 (215-280)||(17055772-17055837)
chr7 (211-288)||(34231934-34232011)
chr7 (211-288)||(4077510-4077587)
chr7 (215-280)||(22819549-22819614)
chr7 (12-72)||(31423054-31423114)
chr7 (215-286)||(27218952-27219023)
chr7 (240-274)||(27854299-27854333)
[»] scaffold0472 (1 HSPs)
scaffold0472 (12-291)||(3484-3764)
[»] chr6 (22 HSPs)
chr6 (15-291)||(24767060-24767337)
chr6 (108-291)||(2553869-2554053)
chr6 (148-291)||(21168431-21168574)
chr6 (12-85)||(2554045-2554118)
chr6 (12-142)||(13938101-13938231)
chr6 (12-112)||(14372619-14372719)
chr6 (12-112)||(17573284-17573384)
chr6 (12-112)||(17605962-17606062)
chr6 (12-112)||(20882661-20882761)
chr6 (211-288)||(649894-649971)
chr6 (211-288)||(18051277-18051354)
chr6 (54-293)||(15958483-15958723)
chr6 (240-280)||(26513967-26514007)
chr6 (61-124)||(33185835-33185898)
chr6 (211-288)||(9199080-9199157)
chr6 (211-288)||(17079019-17079096)
chr6 (215-280)||(29055763-29055828)
chr6 (211-286)||(19350181-19350256)
chr6 (211-286)||(29976843-29976918)
chr6 (229-291)||(13937932-13937994)
chr6 (180-293)||(14372787-14372901)
chr6 (212-280)||(33185678-33185746)
[»] chr2 (13 HSPs)
chr2 (178-289)||(41207250-41207362)
chr2 (12-123)||(28253121-28253232)
chr2 (183-291)||(40176900-40177009)
chr2 (12-112)||(12645948-12646048)
chr2 (180-293)||(28252950-28253064)
chr2 (178-235)||(17764752-17764810)
chr2 (229-275)||(12807996-12808042)
chr2 (240-286)||(36804149-36804195)
chr2 (241-291)||(44547706-44547756)
chr2 (211-288)||(1380317-1380394)
chr2 (211-288)||(2999576-2999653)
chr2 (18-79)||(33515841-33515902)
chr2 (240-280)||(18844490-18844530)
[»] scaffold0179 (2 HSPs)
scaffold0179 (211-288)||(7763-7840)
scaffold0179 (211-288)||(12697-12774)
[»] scaffold0912 (1 HSPs)
scaffold0912 (211-288)||(2701-2777)
[»] scaffold0007 (1 HSPs)
scaffold0007 (240-288)||(182364-182412)
[»] scaffold0189 (1 HSPs)
scaffold0189 (242-280)||(6331-6369)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 19755779 - 19755499
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19755779 agagatgggataggtgagggtggagagggatggtttgggatgtgtgttaggaggagggtgggagatggtgcagacaccgatttttggcgtgatcgttggt 19755680  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgtt-ggggtggatgt 210  Q
    |||||||||||||||| |||| ||||||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  19755679 gcggagatgttccactgtgtgaccggtttaggcgcctttttgacttgaatgttaacaaatcaatttcatttaggaatatgttcttgttgggggtggatgt 19755580  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||    
T  19755579 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttaggaggaggagttggtagaggagtgtagggttttattact 19755499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 19784027 - 19784307
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19784027 agagatgggataggtgagggtggagagggatggtttgggatgtgtgttaggaggagggtgggagatggtgcagacaccgatttttggcgtgatcgttggt 19784126  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgtt-ggggtggatgt 210  Q
    |||||||||||||||| |||| ||||||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  19784127 gcggagatgttccactgtgtgaccggtttaggcgcctttttgacttgaatgttaacaaatcaatttcatttaggaatatgttcttgttgggggtggatgt 19784226  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||    
T  19784227 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttaggaggaggagttggtagaggagtgtagggttttattact 19784307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 23642219 - 23642499
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||    
T  23642219 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 23642318  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttg-ttggggtggatgt 210  Q
    | ||||||||||| ||||||||||||||||||| ||||||| |||||| |||| || ||||||| |||||||||||||||||| || | |||||||||||    
T  23642319 gtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 23642418  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  23642419 gggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttact 23642499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 15740730 - 15740453
Alignment:
Q  14 agatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggtgc 113  Q
    ||||| ||||||||||||||||||||| ||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15740730 agatgagataggtgagggtggagagggatggtttgggtcttgtgt-aggaggagggtgggagatggtgcagatactgatttttggcgtgatcgttggtgc 15740632  T
Q  114 ggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgtt-ggggtggatgtgg 212  Q
    |||||||||||||| |||| ||||||| |||  |||||| ||||||||||| || ||||||| || ||||||||||| |||||||| ||||| || ||||    
T  15740631 ggagatgttccactgtgtgcccggtttgggcgtctttttgacttgaatgttcacaaatcaatctctgttaggaatatattcttgttgggggtagacgtgg 15740532  T
Q  213 gtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15740531 gaggggaggcgttgcagtggcataggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttattact 15740453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 47419316 - 47419036
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||    
T  47419316 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 47419217  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttg-ttggggtggatgt 210  Q
    | ||||||||||| |||||||||||||||  || |||||||  ||||  |||| || | ||||| |||||||||||||||||| || | |||||||||||    
T  47419216 gtggagatgttcctctttgtgtccggtttccgcgcctttttggcttgtctgttcacaattcaatctcagttaggaatatgttcctgctgggggtggatgt 47419117  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||    
T  47419116 gggcggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggaggtggtagaggagtgtagggctttgttact 47419036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 1828168 - 1828448
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1828168 agagatgggataggtgagggtggtgagggatggtttgggtcttgtgttaggaggagggtgggagatggtgcagacactgacttttggcgtgatcgttggt 1828267  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgtt-ggggtggatgt 210  Q
    ||||||||| ||| || |||| ||||||| |||  |||||| |||||| | || || |||| || || |||||||||||||||||||| ||||| || ||    
T  1828268 gcggagatgctcccctgtgtgcccggtttgggcgtctttttgacttgagtattcacaaatctatctctgttaggaatatgttcttgttgggggtagacgt 1828367  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  1828368 gggaggggaggcgttgtggtggcataggcggttgtgggcttgggaggaggagttggtagaggagtggagggctttattact 1828448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 47685688 - 47685803
Alignment:
Q  177 tcagttaggaatatgttcttgttgggg-tggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagt 275  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||| ||| |||||||| ||||| |||||||||||||||||||||||||||||||||    
T  47685688 tcagttaggaatatgttcttgttgggggtggatgtgggcggggaggcattgaggtggcgtgggcggctgtgggcttgggaggaggagttggtagaggagt 47685787  T
Q  276 atagggctttattact 291  Q
     ||||||||| |||||    
T  47685788 gtagggctttgttact 47685803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 54482787 - 54483067
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||||| |||||||||||| ||||||||| |   |||||||||||||||||||| ||||| || || || ||||||||||| ||| ||||||    
T  54482787 agagatgggataggcgagggtggagagagttggtttgtggattgtgttaggaggagggtgggggatggagctgataccgatttttggcgagattgttggt 54482886  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgtt-ggggtggatgt 210  Q
    | ||   ||||||  | ||||  || |||||||| |||| | ||||     | ||  |||||||| | || ||||| ||||||||||| |||||||| |     
T  54482887 gtggtagtgttcccttgtgtgagcgctttaggcatctttatgacttagccatcaataaatcaattacggtgaggaacatgttcttgttgggggtggagga 54482986  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
     |||||||  |||| || ||||||| | ||||| ||||  ||||||||||| ||||||||||||| ||||| |||||||||    
T  54482987 tggtgggggagcgtggcagtggcgtcgccggttatgggtgtgggaggaggatttggtagaggagtgtaggggtttattact 54483067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 5789720 - 5789832
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||||| |||||||| ||||| ||||||| | |||||||||| ||||||||| | ||||| ||  | | |||||||||||||||| ||||||    
T  5789720 agagatgggataggcgagggtggggagggatggtttgcgtcgtgtgttagtaggagggtgcgggatggagccaatattgatttttggcgtgattgttggt 5789819  T
Q  112 gcggagatgttcc 124  Q
    | ||| |||||||    
T  5789820 gtggaaatgttcc 5789832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 48312606 - 48312327
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||| |||||| |||||||||||||||||||||| |   |||||||||||||||||||| ||||| || || |  ||||||||||| ||| ||||||    
T  48312606 agagatgagataggcgagggtggagagggttggtttgtggattgtgttaggaggagggtgggggatggagctgatatcgatttttggcgagattgttggt 48312507  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgtt-ggggtggatgt 210  Q
    | ||  |||||||  | ||||  || |||||||  |||| | ||||     | ||  |||||||  | || ||||| ||||||||||| |||||||| |     
T  48312506 gtgg-tatgttccgttgtgtgagcgctttaggcgactttatgacttagccatcaataaatcaatcacggtgaggaacatgttcttgttgggggtggagga 48312408  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
     ||||||| ||||| || ||||||| | ||||| | ||  || |||||||| ||||||||||||| |||||||||||||||    
T  48312407 tggtgggggggcgtggcagtggcgtcgccggttattggtgtgtgaggaggacttggtagaggagtgtagggctttattact 48312327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 23647877 - 23647939
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtggga 74  Q
    ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||    
T  23647877 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtggga 23647939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 2821662 - 2821762
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||||| |||||||| |||||||||||||     |||||||||||||||||||| ||||| || || || ||||||||||| ||| ||||||    
T  2821662 agagatgggataggcgagggtggggagggttggtttgcagattgtgttaggaggagggtgggggatggagctgataccgatttttggcgagattgttggt 2821761  T
Q  112 g 112  Q
    |    
T  2821762 g 2821762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 55725333 - 55725434
Alignment:
Q  11 cagagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttgg 110  Q
    ||||||||||||||| |||||||| ||||||||||||| |   |||||||||| ||||||||||||||| ||    || ||||||||||| ||| |||||    
T  55725333 cagagatgggataggcgagggtggggagggttggtttgcggattgtgttaggatgagggtgggagatggagccacaacagatttttggcgagattgttgg 55725432  T
Q  111 tg 112  Q
    ||    
T  55725433 tg 55725434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 19735363 - 19735475
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||| | ||||| ||||||||| |||||| | || ||||||||||   ||||||||| ||||| || ||||| ||||||| |||| ||||||    
T  19735363 agagatgggataagagagggcggagagggtaggtttgtgtcgggtgttaggagacaggtgggagacggtgctgagactgacttttggcatgattgttggt 19735462  T
Q  112 gcggagatgttcc 124  Q
    | ||| |||||||    
T  19735463 gtggaaatgttcc 19735475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 46146187 - 46146058
Alignment:
Q  14 agatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtga-tcgttggtg 112  Q
    |||||||||||| ||||| ||||| ||||||||||   || ||||||||||   ||||||||| ||||| || ||||| ||||||||||| | |||||||    
T  46146187 agatgggataggagagggcggagatggttggtttgcatcgggtgttaggagacaggtgggagacggtgctgagactgacttttggcgtgatttgttggtg 46146088  T
Q  113 cggagatgttccactttgtgtccggtttag 142  Q
     ||| |||||||  ||||||| || |||||    
T  46146087 tggaaatgttccgttttgtgtgcgatttag 46146058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 42778550 - 42778473
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| |  |||| | ||| |||||||||||||||||||||||  | ||||||||| |||||| |||||    
T  42778550 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggccttatt 42778473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 53486781 - 53486858
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| |  |||| | ||| |||||||||||||||||||||||  | ||||||||| |||||| |||||    
T  53486781 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggccttatt 53486858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 20395879 - 20395831
Alignment:
Q  240 ggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||||||||||||  | ||||||||| ||||||||||||    
T  20395879 ggttgtgggcttgggaggaggaggagttagaggagtgtagggctttatt 20395831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 18106384 - 18106461
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| |  |||| | ||| |||||||||| ||||||||||||  | ||||||||| |||||| |||||    
T  18106384 gggtggggaggcgtggaagtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttatt 18106461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 4640536 - 4640576
Alignment:
Q  240 ggttgtgggcttgggaggaggagttggtagaggagtatagg 280  Q
    |||||||||||||||||||||| ||| ||||||||| ||||    
T  4640536 ggttgtgggcttgggaggaggacttgttagaggagtgtagg 4640576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 29553599 - 29553643
Alignment:
Q  242 ttgtgggcttgggaggaggagttggtagaggagtatagggcttta 286  Q
    |||||||| ||||||||||||||| ||||||||| |||| |||||    
T  29553599 ttgtgggcgtgggaggaggagttgttagaggagtgtaggacttta 29553643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 35324211 - 35324251
Alignment:
Q  229 gtggcgtaggcggttgtgggcttgggaggaggagttggtag 269  Q
    |||||||||| | |||||||||||||||||||| |||||||    
T  35324211 gtggcgtaggagattgtgggcttgggaggaggatttggtag 35324251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 41664996 - 41665277
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactga-tttttggcgtgatcgttgg 110  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41664996 agagatgggatatgtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgattttttggcgtgatcgttgg 41665095  T
Q  111 tgcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgtt-ggggtggatg 209  Q
    ||| ||||||||||  | |||| ||||||||||| ||||||| ||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||    
T  41665096 tgcagagatgttcctttgtgtgaccggtttaggcgcctttttgacttgaatgttaacagatcaatttcagttaggaatatgttcttgttgggggtggatg 41665195  T
Q  210 tgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  41665196 tgggtggggaggtgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggttttattact 41665277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 63 - 291
Target Start/End: Complemental strand, 13396849 - 13396620
Alignment:
Q  63 aggagggtgggagatggtgcagacactgatttttggcgtgatcgttggtgcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatg 162  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| |||||||||    
T  13396849 aggagggtgggagatggtgcagacattgatttttggcgtgatcgttggtgcggagatgttccactgtgtgaccggtttaggcgcctttttgacttgaatg 13396750  T
Q  163 ttaaccaatcaatttcagttaggaatatgttcttgtt-ggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggagga 261  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13396749 ttaacaaatcaatttcagttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggagga 13396650  T
Q  262 gttggtagaggagtatagggctttattact 291  Q
    |||||||||||||| ||||| |||||||||    
T  13396649 gttggtagaggagtgtagggttttattact 13396620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 8300315 - 8300035
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||    
T  8300315 agagatgggataggtgagggtggcgagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 8300216  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttg-ttggggtggatgt 210  Q
    | ||||||||||| ||||||||||||||||||| ||||||| |||||  |||| || ||||||| |||||||||||||||||| || | |||||||||||    
T  8300215 gtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 8300116  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  8300115 gggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttact 8300035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 7924898 - 7924618
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||| |||||||||||||||| ||||||||| | ||||||| |||||| |||||| |||| ||| | ||||||||| |||||||| ||||||    
T  7924898 agagatgggatacgtgagggtggagagggatggtttgggtcttgtgttacgaggagagtgggacatggggcacatactgattttgggcgtgattgttggt 7924799  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttg-ttggggtggatgt 210  Q
    | |||||||| || |||||||||||||||| || ||||||| |||||| |||| || ||||||| |||||||||||||||||| || | |||||||||||    
T  7924798 gtggagatgtccctctttgtgtccggtttatgcgcctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 7924699  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  7924698 gggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttact 7924618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 9923113 - 9922833
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| || ||||||||||| ||| ||||||    
T  9923113 agagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagacggtgcagagacagatttttggcgggattgttggt 9923014  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgtt-ggggtggatgt 210  Q
    | |||||||||||| | ||||   ||||||| | ||||| | |||||| ||| ||| || |||| || |||||||| ||||||||||| |||||||||||    
T  9923013 gtggagatgttccattgtgtgaatggtttagtcgcctttatgacttgactgtgaacaaaccaatctctgttaggaacatgttcttgttgggggtggatgt 9922914  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
     ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  9922913 cggtggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaagagttggtagaggagtctagggctttattact 9922833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 12 - 288
Target Start/End: Complemental strand, 32267074 - 32266797
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||||||||| || ||||||||||||||  || ||||||    
T  32267074 agagatgggataggtgagggtggagaggggtggtttgggtcttgtgttaggaggaaggtgggagatggtgcggatactgatttttggcggtattgttggt 32266975  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgtt-ggggtggatgt 210  Q
    |||||||||||||||| ||||  |||||   ||  |||||| |||||| |||| || ||||||| || ||||| ||  | |||||||| |||||||||||    
T  32266974 gcggagatgttccactgtgtgctcggttagagcgtctttttgacttgagtgttcacaaatcaatctccgttagaaactttttcttgttcggggtggatgt 32266875  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  32266874 gggtggggaggcgttgcggtggcgtaggaggttgtgggcctgggaggaggagttggtagaggagtgtagggctttatt 32266797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 172459 - 172335
Alignment:
Q  168 caatcaatttcagttaggaatatgttcttgttg-gggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttgg 266  Q
    |||||| | |||||||||||||||||| || || ||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||| ||||||    
T  172459 caatcagtctcagttaggaatatgttcctgctgagggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcctgggaggagaagttgg 172360  T
Q  267 tagaggagtatagggctttattact 291  Q
    ||||||||| ||||||||| |||||    
T  172359 tagaggagtgtagggctttgttact 172335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 13879115 - 13879395
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||||| |||||||||||||||||||||| |   |||||||||||||||||||| ||||  || || |||||||||||||| ||| ||||||    
T  13879115 agagatgggataggcgagggtggagagggttggtttgtggattgtgttaggaggagggtgggggatgaagctgatactgatttttggcgagattgttggt 13879214  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgtt-ggggtggatgt 210  Q
    | ||   ||||||  | ||||  || |||||||  |||| | ||||   | |  |  |||||||  | || ||||| ||||||||||| |||||||| |     
T  13879215 gtggtagtgttccgttgtgtgagcgctttaggcgtctttatgacttagctatcgataaatcaatcacggtgaggaacatgttcttgttcggggtggagga 13879314  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
     |||||||  |||| || ||||||| | ||||| ||||  ||||||||||| ||||||||||||| |||||||||||||||    
T  13879315 tggtgggggagcgtggcagtggcgtcgccggttatgggtgtgggaggaggacttggtagaggagtgtagggctttattact 13879395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 25090899 - 25090799
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||||| ||||||||| |||||||||||  |   |||||||||||||||||||| ||||| ||||| |||||||||||||| ||| ||||||    
T  25090899 agagatgggataggcgagggtggaaagggttggtttacggattgtgttaggaggagggtgggggatggagcagatactgatttttggcgagattgttggt 25090800  T
Q  112 g 112  Q
    |    
T  25090799 g 25090799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 17699992 - 17699892
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||| ||||| |||||||     |||||||||||||||||||| ||||| || || |||||||||||||| ||| ||||||    
T  17699992 agagatgggataggtgagggtggggagggctggtttgcaggttgtgttaggaggagggtgggggatggagccgatactgatttttggcgagattgttggt 17699893  T
Q  112 g 112  Q
    |    
T  17699892 g 17699892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 20824811 - 20824711
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||      |||||||||||||||||||| ||||| || || || ||||||||||||||| ||||||    
T  20824811 agagatgggataggtgagggtggggagggctggttttcaggttgtgttaggaggagggtgggggatggagctgataccgatttttggcgtgattgttggt 20824712  T
Q  112 g 112  Q
    |    
T  20824711 g 20824711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 172667 - 172716
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttag 61  Q
    ||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  172667 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttag 172716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 12134610 - 12134565
Alignment:
Q  241 gttgtgggcttgggaggaggagttggtagaggagtatagggcttta 286  Q
    ||||||||| ||||||||||| ||||||||||||| ||||||||||    
T  12134610 gttgtgggcgtgggaggaggacttggtagaggagtgtagggcttta 12134565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 17659143 - 17659066
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| |  |||| | ||| |||||||||||||||||||||||  | ||||||||| ||||| ||||||    
T  17659143 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggttttatt 17659066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 23680474 - 23680397
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| |  |||| | ||| ||||||||| |||||||||||||  | ||||||||| ||||||||||||    
T  23680474 gggtggggaggcgtggaagtggaggagggggttgtgggtttgggaggaggaggagttagaggagtgtagggctttatt 23680397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 28993058 - 28993111
Alignment:
Q  212 ggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttg 265  Q
    ||||||||||| | || ||||||| ||||||||||| |||||||||||||||||    
T  28993058 ggtggggaggcttggcagtggcgtcggcggttgtggacttgggaggaggagttg 28993111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 43270964 - 43270877
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggc 99  Q
    |||||||||||||| |||||||| ||||| |||||||     ||||||||||||||||| || ||||| || || || ||||||||||    
T  43270964 agagatgggataggcgagggtggggagggctggtttgcaggttgtgttaggaggagggtaggggatggagccgataccgatttttggc 43270877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 42177180 - 42177277
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||||| |||||||| ||   |||||||| |   |||||||||||||||||||| ||||| || || |  ||||||||||| ||| ||||||    
T  42177180 agagatgggataggcgagggtgggga---ttggtttgcgggttgtgttaggaggagggtgggggatggggccgaaatcgatttttggcgagattgttggt 42177276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 25090728 - 25090619
Alignment:
Q  183 aggaatatgttcttgttgggg-tggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtataggg 281  Q
    ||||| ||||||||||||||| |||| |  |||||||  |||| || ||||||| | || || | ||  ||||||||| | ||||||||||||| |||||    
T  25090728 aggaacatgttcttgttgggggtggaggatggtgggggagcgtggcagtggcgtcgccgtttattggtgtgggaggagaaattggtagaggagtgtaggg 25090629  T
Q  282 ctttattact 291  Q
    ||||||||||    
T  25090628 ctttattact 25090619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 13200337 - 13200297
Alignment:
Q  251 tgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||||||||||||||||||||||||| || || |||||||||    
T  13200337 tgggaggaggagttggtagaggagtgtatggatttattact 13200297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 34332443 - 34332723
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  34332443 agagatgggataggtgagggtggagagggatggtttgggacgtgtgttaggaggagggtgggagatggtgcagactcagatttttggcgtgatcgttggt 34332542  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgtt-ggggtggatgt 210  Q
    | ||| |||||||||| |||||||||||||||| ||||||| |||||||||||| | ||||||| ||||||||||||||||||||||| ||||||||  |    
T  34332543 gtggaaatgttccactgtgtgtccggtttaggcgcctttttgacttgaatgttatcaaatcaatctcagttaggaatatgttcttgttgggggtggacat 34332642  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  34332643 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggttttattact 34332723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 2364789 - 2364509
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||    
T  2364789 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 2364690  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttg-ttggggtggatgt 210  Q
    | || |||||||| ||||||||||||||||||| ||||||| |||||| |||| || ||||||| |||||||||||||||||| || | |||||||||||    
T  2364689 gtggtgatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 2364590  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  2364589 gggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttact 2364509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 10323199 - 10323479
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||    
T  10323199 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 10323298  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttg-ttggggtggatgt 210  Q
    | ||||||||||| |||||||||||||||  || |||||||  ||||  |||| || | ||||| |||||||||||||||||| || | |||||||||||    
T  10323299 gtggagatgttcctctttgtgtccggtttccgcgcctttttggcttgtctgttcacaattcaatctcagttaggaatatgttcctgctgggggtggatgt 10323398  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  10323399 gggcggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttact 10323479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 19919857 - 19920137
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||||||||||| || ||||||||||||  ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||    
T  19919857 agagatgggataggtgagggaggtgagggttggtttcagacttgtgttaggaggagggtgggagatggtgcagatactgatttttggcgtgattgctggt 19919956  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatg-ttcttgttggggtggatgt 210  Q
    | |||| || |||| | |||||||| |||  || ||||||| |||||| |||| || |||| || ||||||||||||||| ||||  | |||||||||||    
T  19919957 gtggagctgatccattgtgtgtccgatttccgcgcctttttgacttgactgttcacaaatctatctcagttaggaatatgtttctgctgggggtggatgt 19920056  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||| |||||||| ||| |||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  19920057 gggcggggaggcattgaggtgtcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttact 19920137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 200 - 291
Target Start/End: Complemental strand, 7313099 - 7313008
Alignment:
Q  200 ggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  7313099 ggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttact 7313008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 291
Target Start/End: Original strand, 40930245 - 40930436
Alignment:
Q  90 gatttttggcgtgatcgttggtgcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaata 189  Q
    |||||||||| |||| ||||||||| | |||||||| | |||| ||| ||||| | ||||| | |||||  ||| ||| ||||||| || ||||||||||    
T  40930245 gatttttggcatgattgttggtgcgtatatgttccattgtgtgaccgttttagtcgcctttatgacttggctgtgaacaaatcaatctctgttaggaata 40930344  T
Q  190 tgttcttgtt--ggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttat 287  Q
    ||||||||||  ||||||||||||||||||||||||||||||||            ||||||||||||||| |||||||||||||||| ||||| |||||    
T  40930345 tgttcttgttggggggtggatgtgggtggggaggcgttgcggtg------------gtgggcttgggaggaagagttggtagaggagtgtagggttttat 40930432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 7032606 - 7032538
Alignment:
Q  223 gttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  7032606 gttgcggtggcgtaggcgtttgtgggcttgggaggaagagttggtagaggagtttagggctttattact 7032538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 17097505 - 17097605
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||||| |||||||| ||||| ||||||| | |||||||||||||  ||||||| || || || || |||||||||||||||||| ||||||    
T  17097505 agagatgggataggcgagggtggggaggggtggtttgtgtcgtgtgttaggagacgggtgggggacggagctgatactgatttttggcgtgattgttggt 17097604  T
Q  112 g 112  Q
    |    
T  17097605 g 17097605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 48569667 - 48569767
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||| ||||||||||||| |   |||||||||||||||||||| ||||| || || || ||||||||||  ||| ||||||    
T  48569667 agagatgggataggtgagggtggggagggttggtttgtggattgtgttaggaggagggtgggggatggagctgataccgatttttggcaagattgttggt 48569766  T
Q  112 g 112  Q
    |    
T  48569767 g 48569767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 3141363 - 3141233
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||||| |||||  |||||||||||||||    | ||||||||||   ||||||||| ||||| || ||||| |||||||||||| ||||||    
T  3141363 agagatgggataggagagggcagagagggttggtttgcattgggtgttaggagacaggtgggagacggtgctgagactgagttttggcgtgattgttggt 3141264  T
Q  112 gcggagatgttccactttgtgtccggtttag 142  Q
    | ||| |||||||| ||||||| || |||||    
T  3141263 gtggaaatgttccattttgtgtgcgatttag 3141233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 15313094 - 15312993
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggag-gagggtgggagatggtgcagacactgatttttggcgtgatcgttgg 110  Q
    ||||||| |||||| |||||||| ||||| ||||||| | |||||||||||||  |||||||| ||||| || || |||||||||||| ||||| |||||    
T  15313094 agagatgagataggcgagggtggggagggatggtttgcgtcgtgtgttaggagaaagggtgggggatggagccgatactgatttttggtgtgatagttgg 15312995  T
Q  111 tg 112  Q
    ||    
T  15312994 tg 15312993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 31547679 - 31547619
Alignment:
Q  215 ggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagt 275  Q
    |||||||||| || ||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  31547679 ggggaggcgtggcagtggcgtaggcggttgtgggcatgggaggaggagttgttaggggagt 31547619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 16179459 - 16179360
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||||| |||||||| ||| | ||||||| | |||||||||| ||||||||||| |||||  |  | |||||||||||||| ||| ||||||    
T  16179459 agagatgggataggcgagggtggggagagatggtttgtgtcgtgtgttagtaggagggtgggggatggatccaatactgatttttggcgcgatagttggt 16179360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 26846179 - 26846102
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| | ||||| | ||| |||||||||| ||||||||||||  | ||||||||| ||||||||||||    
T  26846179 gggtggggaggcgtggaggtgggggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggctttatt 26846102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 44888212 - 44888147
Alignment:
Q  215 ggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagg 280  Q
    |||||||||| || ||||||||||||||||||||| ||||||||||| ||| ||| ||||| ||||    
T  44888212 ggggaggcgtggcagtggcgtaggcggttgtgggcatgggaggaggaattgttaggggagtgtagg 44888147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 47537580 - 47537503
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| |  |||| | ||| |||||||||||||||||||||||  | ||||||||| ||||||||||||    
T  47537580 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctttatt 47537503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 962794 - 963071
Alignment:
Q  15 gatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggtgcg 114  Q
    ||||||||||  ||||| ||| ||||||||||||   |  ||||||||||   ||||||||| ||||| || ||||| | |||||||||| ||||||| |    
T  962794 gatgggatagaagagggaggatagggttggtttgcatcaggtgttaggagacaggtgggagacggtgctgagactgactgttggcgtgattgttggtgtg 962893  T
Q  115 gagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgttggg-gtggatgtggg 213  Q
    || |||||||  ||||||| || ||||| |  |||||| | ||||  || ||| ||    |  |  ||||||| ||||||  ||||||  |||| || ||    
T  962894 gaaatgttccgttttgtgtgcgatttagacggctttttgatttgacagtcaacaaagttgtcacgattaggaacatgttccagttgggtttggaggttgg 962993  T
Q  214 tggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||||| ||||| || ||||||| | || ||||||| ||||||||| || ||||||||||||| |||||  ||||||||    
T  962994 tgggggggcgtggcagtggcgtcgccgcttgtgggtttgggaggaagaattggtagaggagtgtagggaattattact 963071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 286
Target Start/End: Complemental strand, 15279877 - 15279802
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggcttta 286  Q
    |||||||||||||| |  |||||||||  | |||||||||||||| |||||| ||||||||| || |||| |||||    
T  15279877 gggtggggaggcgtggatgtggcgtagaagattgtgggcttgggaagaggagatggtagaggcgtgtaggtcttta 15279802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 26010327 - 26010284
Alignment:
Q  243 tgtgggcttgggaggaggagttggtagaggagtatagggcttta 286  Q
    ||||||||||||||||||| ||||||||||||| |||| |||||    
T  26010327 tgtgggcttgggaggaggaattggtagaggagtgtaggacttta 26010284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 48192111 - 48192034
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| |  |||| | ||| |||||||||| ||||||||||||  | ||||||||| |||||| |||||    
T  48192111 gggtggggaggcgtggaagtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttatt 48192034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 291
Target Start/End: Original strand, 48569838 - 48569947
Alignment:
Q  183 aggaatatgttcttgttgggg-tggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtataggg 281  Q
    ||||| ||||||||||||||| | || |  |||||||  |||| || ||||||| | || || ||||  ||||||||||| ||||||||||||| |||||    
T  48569838 aggaacatgttcttgttgggggttgaggatggtgggggagcgtggcagtggcgtcgccgtttatgggtgtgggaggaggacttggtagaggagtgtaggg 48569937  T
Q  282 ctttattact 291  Q
    ||||| ||||    
T  48569938 ctttactact 48569947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 9510037 - 9509997
Alignment:
Q  240 ggttgtgggcttgggaggaggagttggtagaggagtatagg 280  Q
    |||||||||| ||||||||||||||||||| ||||| ||||    
T  9510037 ggttgtgggcatgggaggaggagttggtagcggagtgtagg 9509997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 9518012 - 9517972
Alignment:
Q  240 ggttgtgggcttgggaggaggagttggtagaggagtatagg 280  Q
    |||||||||| ||||||||||||||||||| ||||| ||||    
T  9518012 ggttgtgggcatgggaggaggagttggtagcggagtgtagg 9517972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 30731942 - 30732222
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  30731942 agagatgggataggtgagggtggagagggttggtttgggacatgtgttaggaggagggtgggagatggtgcagatactgatttttggcgtgattgttggt 30732041  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttg-ttggggtggatgt 210  Q
    | ||||||||||| || |||||||||||||| | ||||||| |||||| || | || ||||||| |||||||||||||||||| || | |||||||||||    
T  30732042 gtggagatgttcctctgtgtgtccggtttagacgcctttttgacttgactgctcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 30732141  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  30732142 gggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttact 30732222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 12825711 - 12825431
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||     
T  12825711 agagatgggataggtgagggtggagagggttggtttgggacatgtgttaggaggagggtgggagatggtgcagatactgatttttggcgtgattgttgga 12825612  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttg-ttggggtggatgt 210  Q
    | |||||||||||  | |||||||||||||||| ||||||| |||||| |||| || ||||||| |||||||||||||||||| || | |||||||||||    
T  12825611 gtggagatgttcctttgtgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 12825512  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||    
T  12825511 gggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggatgaggagttggtagaggagtgtagggctttgttact 12825431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 42514232 - 42513952
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||| ||||| |||||||| ||||||||| ||||||    
T  42514232 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttctggcgtgattgttggt 42514133  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgtt-cttgttggggtggatgt 210  Q
    | ||||||||||| ||||||||||||||||||| ||||||| |||||| |||| || ||||||| ||||||||||||||||| ||| | |||||||||||    
T  42514132 gtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctcagttaggaatatgttccttctgggggtggatgt 42514033  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  42514032 ggggggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttact 42513952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 288
Target Start/End: Complemental strand, 23238895 - 23238619
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| | || || ||||||||||||||||||||||    
T  23238895 agagatgggataggtgagggtggagaggggtggtttgggtcttgtgttaggaggagggtgggagatggtacggataccgatttttggcgtgatcgttggt 23238796  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgttggggtggatgtg 211  Q
    |||||||||||||||| |||| ||||||| |||  |||||| |||||| |||  || ||||||| || |||||||||||||||||||| |||||||| ||    
T  23238795 gcggagatgttccactgtgtgcccggtttgggcgtctttttgacttgagtgtacacaaatcaatctccgttaggaatatgttcttgttagggtggatttg 23238696  T
Q  212 ggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||| ||||||||||||    
T  23238695 ggtggggaggcgttgcggtggcgtaggaggttgtgggccagggaggaggagttggtagaggagtgtagggctttatt 23238619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 31642023 - 31641743
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| || ||||||||||| ||| ||||||    
T  31642023 agagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagacggtgcagatacagatttttggcgggattgttggt 31641924  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttg-ttggggtggatgt 210  Q
    | ||| |||||||  | |||| ||||||||| | ||||| | |||||| ||| ||| || |||| || |||||||| ||||||||| | |||||||| ||    
T  31641923 gtggaaatgttcctttgtgtgaccggtttagtcgcctttatgacttgactgtgaacaaaccaatctctgttaggaacatgttcttgatgggggtggaggt 31641824  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
     ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  31641823 cggtggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaagagttggtagaggagtttagggctttattact 31641743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 35983419 - 35983699
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||| ||||||||||||||||||||  | ||||||||||||||||||||||| |||||||| || ||||||||||||||| || |||    
T  35983419 agagatgggataggtgacggtggagagggttggtttggatcttgtgttaggaggagggtgggagacggtgcagaaacggatttttggcgtgattgtaggt 35983518  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgtt-ggggtggatgt 210  Q
    | |||||||||||  | |||| ||| ||||| | ||| | | |||||| ||| ||| || |||| || |||||||||||||||||||| ||||||||||     
T  35983519 gtggagatgttcctatgtgtgaccgttttagtcgcctatatgacttgactgtgaacaaaccaatctctgttaggaatatgttcttgttgggggtggatga 35983618  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  35983619 gggtggggaggcgttgaggtggcgtaggcggttgtgggcttaggaggaggagttggtagaggagtttagggctttattact 35983699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 28535303 - 28535583
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||| ||| || ||||||||||| ||| ||||||    
T  28535303 agagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagacggtgtagaaacagatttttggcgggattgttggt 28535402  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgtt-ggggtggatgt 210  Q
    | |||||||||||  | |||| ||| ||||| | ||||| | |||||| ||| ||| |  |||| || |||||||||||||||||||| |||||||||||    
T  28535403 gtggagatgttcctttgtgtgaccgttttagtcgcctttatgacttgactgtgaacaatccaatctctgttaggaatatgttcttgttgggggtggatgt 28535502  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
     ||||||||||||||| ||||||||||| ||||||||||||| ||||| |||||||||||||||| |||||||||||||||    
T  28535503 cggtggggaggcgttgaggtggcgtaggtggttgtgggcttgagaggaagagttggtagaggagtttagggctttattact 28535583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 42928643 - 42928363
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| || ||||| || || ||||||| ||||||| ||||||    
T  42928643 agagatgggataggtgagggtggagagggctggtttggggcgtgttttaggaggagggtgggtgacggtgctgaaacagatttttagcgtgattgttggt 42928544  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgttgg-ggtggatgt 210  Q
    |||| ||||||||    |||| ||| ||||| | ||| | | |||||  ||||||  |||||||  |||||||||||||||||||||||| || ||||||    
T  42928543 gcggtgatgttccgaggtgtgaccgttttagtcgcctatatgacttggctgttaataaatcaatcacagttaggaatatgttcttgttggaggcggatgt 42928444  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||| |||||||||    
T  42928443 gggtggggaggcgttgcagtggcgtcggcggttgtgggcttgggaggaagagttggtagaggagtgtagggttttattact 42928363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 27116801 - 27117069
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||||||| ||| ||||||||||||||||             
T  27116801 agagatgggataggtgagggtggagggggatggtttgggtcttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtg--------- 27116891  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgttgggg-tggatgt 210  Q
       ||||||||||  | |||||||||||||||| ||||||| |||||  |||| | |||||| | |||||||||||||||||| || ||||| |||||||    
T  27116892 ---gagatgttcctttgtgtgtccggtttaggcgcctttttgacttgtctgttcatcaatcagtctcagttaggaatatgttcctgctgggggtggatgt 27116988  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||| || ||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||| |||||    
T  27116989 gggcggagaggcgttgaggtggcgtaggcggttgtgggcctgggaggaggggttggtagaggagtgtagggctttgttact 27117069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 27795996 - 27795895
Alignment:
Q  12 agagatgggatag-gtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttgg 110  Q
    ||||||||||||| | |||||||||||||||||||||| |   |||||||||||||||||||| ||||| || || |||||||||||||| ||| |||||    
T  27795996 agagatgggatagcgcgagggtggagagggttggtttgtggattgtgttaggaggagggtgggggatggagctgatactgatttttggcgagattgttgg 27795897  T
Q  111 tg 112  Q
    ||    
T  27795896 tg 27795895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 10777296 - 10777196
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||| |||||||||| ||||| |||||||     |||||||||||||||||||| ||||| || || |||||||||||||| ||| ||||||    
T  10777296 agagatgggatatgtgagggtggggagggctggtttgcaggttgtgttaggaggagggtgggggatggagccgatactgatttttggcgagattgttggt 10777197  T
Q  112 g 112  Q
    |    
T  10777196 g 10777196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 33170167 - 33169890
Alignment:
Q  15 gatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggtgcg 114  Q
    ||||||||||  |||||  |||||||||||||||   |  ||||||||||   ||||||||| ||||| || ||||| |||||||||||| ||||||| |    
T  33170167 gatgggatagaagagggatgagagggttggtttgcatcaggtgttaggagacaggtgggagacggtgctgagactgacttttggcgtgattgttggtgtg 33170068  T
Q  115 gagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgttggg-gtggatgtggg 213  Q
    || |||||||  ||||||| || ||||| |  |||||| | ||||  || ||| ||    |  | |||||||| ||||||  ||||||  |||| || ||    
T  33170067 gaaatgttccgttttgtgtgcgatttagacggctttttgatttgacagtcaacaaagttgtcacggttaggaacatgttccagttgggtttggaggttgg 33169968  T
Q  214 tggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||||| ||||| || ||||||  | || ||||||| ||||||||| |||||||||||||||| |||||  ||||||||    
T  33169967 tgggggggcgtggcagtggcgacgccgcttgtgggtttgggaggacgagttggtagaggagtgtagggaattattact 33169890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 25857052 - 25857152
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||      |||||||||||||||||||| ||||| || || || ||||||||||| ||| ||||||    
T  25857052 agagatgggataggtgagggtggggagggatggttttcaggttgtgttaggaggagggtgggggatggagctgataccgatttttggcgcgattgttggt 25857151  T
Q  112 g 112  Q
    |    
T  25857152 g 25857152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 8299812 - 8299910
Alignment:
Q  14 agatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggtg 112  Q
    ||||||||||||||||||||| ||||| ||||||      |||||||||||||||||||| ||||| || || || ||||||||||| ||| |||||||    
T  8299812 agatgggataggtgagggtggggagggatggttttcaggttgtgttaggaggagggtgggggatggagctgataccgatttttggcgcgattgttggtg 8299910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 20208547 - 20208624
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| | ||||| | ||| |||||||||| ||||||||||||  | ||||||||| ||||||||||||    
T  20208547 gggtggggaggcgtggaggtggaggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggctttatt 20208624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 27795824 - 27795715
Alignment:
Q  183 aggaatatgttcttgtt-ggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtataggg 281  Q
    ||||| ||||||||||| |||||||| |  |||||||  |||| || ||||||| | || || ||||  ||||||||||| ||||||||||||| |||||    
T  27795824 aggaacatgttcttgttaggggtggaggatggtgggggagcgtggcagtggcgtcgccgattatgggtgtgggaggaggacttggtagaggagtgtaggg 27795725  T
Q  282 ctttattact 291  Q
    ||||||||||    
T  27795724 ctttattact 27795715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 24408222 - 24408170
Alignment:
Q  229 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtataggg 281  Q
    ||||||| | || ||||||||||||||||| |||||||||||||||| |||||    
T  24408222 gtggcgtcgtcgcttgtgggcttgggaggaagagttggtagaggagtgtaggg 24408170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 23878398 - 23878444
Alignment:
Q  229 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagt 275  Q
    |||||||||| |||||||||| ||||||||||| ||||||| |||||    
T  23878398 gtggcgtaggaggttgtgggcgtgggaggaggatttggtagtggagt 23878444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 4415528 - 4415605
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| |  |||| | ||| |||||||||| ||||||||||||  | ||||||||| |||||| |||||    
T  4415528 gggtggggaggcgtggaagtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttatt 4415605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 22095109 - 22095150
Alignment:
Q  242 ttgtgggcttgggaggaggagttggtagaggagtatagggct 283  Q
    |||||||| ||||||||||||||| ||||||||| |||||||    
T  22095109 ttgtgggcgtgggaggaggagttgttagaggagtttagggct 22095150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 18089392 - 18089483
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgat 104  Q
    ||||||||| |||| |||||||| ||||| ||||||| | ||||||||||| |   |||||| ||||| ||  | ||||||||||||||||||    
T  18089392 agagatgggttaggcgagggtgg-gaggggtggtttgtgtcgtgtgttaggcgtcaggtgggtgatggagcttatactgatttttggcgtgat 18089483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 27165578 - 27165638
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgg 72  Q
    |||||||||||||| |||||||| ||||| | ||||| |  |||||| |||||||||||||    
T  27165578 agagatgggataggcgagggtggggaggggttgtttgcgctgtgtgtcaggaggagggtgg 27165638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 11908733 - 11909013
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||    
T  11908733 agagatgggataggtgagggtggagagggttggtttgggacatgtgttaggaggagggtgggagatggtgcagatactgatttttgacgtgattgttggt 11908832  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttg-ttggggtggatgt 210  Q
    | |||||||||||  | |||||||||||||||| ||||||| |||||| |||| || ||||||| |||||||||||||||||| || | |||||||||||    
T  11908833 gtggagatgttcctttgtgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcatgatgggggtggatgt 11908932  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  11908933 gggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttact 11909013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 6051115 - 6050835
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||    
T  6051115 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 6051016  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttg-ttggggtggatgt 210  Q
    | ||||||||||| ||||||||||||||||||| ||||||| |||||| |||| || ||||||| |||||||||||||||||| || | |||||||||||    
T  6051015 gtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 6050916  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  6050915 gggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttact 6050835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 35541561 - 35541281
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||    
T  35541561 agagatgggataggtgagggtggcgagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 35541462  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttg-ttggggtggatgt 210  Q
    | ||||||||||| ||||||||||||||||||| ||||||| |||||  |||| || ||||||| |||||||||||||||||| || | |||||||||||    
T  35541461 gtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 35541362  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  35541361 gggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttact 35541281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 22191613 - 22191678
Alignment:
Q  215 ggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagg 280  Q
    |||| ||||| || ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||    
T  22191613 ggggtggcgtggcagtggcgtaggcggttgtgggcatgggaggaggagttggtaggggagtgtagg 22191678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 43388877 - 43388777
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||| ||||| ||||| ||||||   |  |||||||||||||||||||| ||||| || ||  ||||||||||||| ||| ||||||    
T  43388877 agagatgggataggtgatggtggggagggctggtttacaagttgtgttaggaggagggtgggggatggagctgatgctgatttttggcgagattgttggt 43388778  T
Q  112 g 112  Q
    |    
T  43388777 g 43388777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 47622705 - 47622817
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||   |||| ||| ||||||||||||  |   |||||||||||||||||||| |||||| | || |||||||||||||| ||| ||||||    
T  47622705 agagatgggataaacgaggatggggagggttggttttcggattgtgttaggaggagggtgggggatggttccgatactgatttttggcgggattgttggt 47622804  T
Q  112 gcggagatgttcc 124  Q
    | || ||||||||    
T  47622805 gtggtgatgttcc 47622817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 281
Target Start/End: Complemental strand, 2491556 - 2491454
Alignment:
Q  180 gttaggaatatgttcttgttggg-gtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtata 278  Q
    |||||| ||||||||  |||||| ||||| |  ||||||| ||||| || ||||||| | || ||||||||||||||||| |||||||||||||||| ||    
T  2491556 gttaggtatatgttccagttgggtgtggaggctggtgggggggcgtggcagtggcgtcgtcgtttgtgggcttgggaggaagagttggtagaggagtgta 2491457  T
Q  279 ggg 281  Q
    |||    
T  2491456 ggg 2491454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 43944291 - 43944353
Alignment:
Q  200 ggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggag 262  Q
    |||||||| | |||||||||||| | || |||||||||||||||||||| |||||||||||||    
T  43944291 ggggtggaggagggtggggaggcttggcagtggcgtaggcggttgtgggattgggaggaggag 43944353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 21405146 - 21405081
Alignment:
Q  215 ggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagg 280  Q
    |||||||||| || ||||||||||||||||||||| || |||||||||||| ||| ||||| ||||    
T  21405146 ggggaggcgtggcagtggcgtaggcggttgtgggcatgagaggaggagttgttaggggagtgtagg 21405081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 3074043 - 3073993
Alignment:
Q  230 tggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagg 280  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||||| ||||    
T  3074043 tggcgtaggcggttgtgggcctgggaggaggagttgttaggggagtgtagg 3073993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 293
Target Start/End: Original strand, 47622881 - 47622987
Alignment:
Q  188 tatgttcttgttgggg-tggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggcttta 286  Q
    |||||| ||||||||| |||| || ||||| |||| || |  ||||||| | ||||| ||||| |||||||||||  |||||||||||| || |||||||    
T  47622881 tatgtttttgttgggggtggaggttggtggtgaggtgtggtagtggcgtcgtcggttatgggcgtgggaggaggacctggtagaggagtgtaaggcttta 47622980  T
Q  287 ttactga 293  Q
    |||||||    
T  47622981 ttactga 47622987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 17708291 - 17708214
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| |  |||| | ||| |||||||||||||||||||||||  | ||||||||| |||||| |||||    
T  17708291 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggccttatt 17708214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 30110753 - 30110826
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctt 284  Q
    |||||||||||||| |  |||| | ||| |||||||||||||||||||||||  | ||||||||| ||||||||    
T  30110753 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctt 30110826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 47106538 - 47106586
Alignment:
Q  240 ggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||| ||||||||||||||||||  | ||||||||| ||||||||||||    
T  47106538 ggttatgggcttgggaggaggaggagttagaggagtgtagggctttatt 47106586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 105471 - 105751
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||    
T  105471 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 105570  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttg-ttggggtggatgt 210  Q
    | ||||||||||| ||||||||||||||||||| ||||||| |||||| |||| || ||||||| |||||||||||||||||| || | |||||||||||    
T  105571 gtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 105670  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  105671 gggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttact 105751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 4937756 - 4938036
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||    
T  4937756 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 4937855  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttg-ttggggtggatgt 210  Q
    | ||||||||||| ||||||||||||||||||| ||||||| |||||| |||| || ||||||| |||||||||||||||||| || | |||||||||||    
T  4937856 gtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 4937955  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  4937956 gggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttact 4938036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 11276876 - 11277157
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||    
T  11276876 agagatgggataggtgagggtggagaggggtggtttgggtcttgtgttaggaggagggtgggagatggtgcagataccgatttttggtgtgatcgttggt 11276975  T
Q  112 gcggagatgttccactttgtgtccggtttaggcac----cttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgttgggg-tgg 206  Q
    |||||||||||||||| |||| ||||||| |||      |||||| ||||||||||  || ||||||| ||||||||||||||||||||||||||| |||    
T  11276976 gcggagatgttccactgtgtgcccggtttgggcgtgcgtctttttgacttgaatgtagacaaatcaatctcagttaggaatatgttcttgttgggggtgg 11277075  T
Q  207 atgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11277076 atgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttatt 11277157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 47877495 - 47877215
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||||| ||||||||||| || |||||||||||||||||||||| |||||||||||| |||||| | || ||||||||||||||||||||||    
T  47877495 agagatgggataggcgagggtggagatggatggtttgggacgtgtgttaggatgagggtgggagacggtgcataaacagatttttggcgtgatcgttggt 47877396  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgtt-ggggtggatgt 210  Q
    |||||||||||||||| || | ||| ||||| | ||||| | |||||| ||||||| ||||||| ||||||||||||||||||||||| |||||||| ||    
T  47877395 gcggagatgttccactgtgcgaccgttttagtcgcctttatgacttgactgttaacaaatcaatctcagttaggaatatgttcttgttgggggtggacgt 47877296  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| |||||||||    
T  47877295 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaagagttggtagaggagtgtggggttttattact 47877215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 235066 - 235345
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  || || | || ||||||||||||||||||||||    
T  235066 agagatgggataggcgagggtggagagggctgatttgggacgtgtgttaggaggagggtgggagacagtacaaaaacagatttttggcgtgatcgttggt 235165  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgttggggtggatgtg 211  Q
    |||||||||||||||| |||| ||| ||||| | ||||| | |||||  ||||||| ||||||| ||||||| ||||||||||||||||||||||| |||    
T  235166 gcggagatgttccactgtgtgaccgttttagtcgcctttatgacttggctgttaacaaatcaatctcagttatgaatatgttcttgttggggtggacgtg 235265  T
Q  212 ggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||||  ||||||||||||||| ||||| |||||||||    
T  235266 ggtggggaggcgttgcggtggcgtcagcgattgtgggcttgggaggaaaagttggtagaggagtgtagggttttattact 235345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 17721147 - 17720867
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| || ||||||||| | ||| ||||||    
T  17721147 agagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagacggtgcagagacagatttttggtgggattgttggt 17721048  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgtt-ggggtggatgt 210  Q
    | ||||||||| || | ||||  |||||||| | ||||| | |||||| ||| ||| ||  ||| || |||||||| ||| ||||||| |||||||||||    
T  17721047 gtggagatgtttcattgtgtgaacggtttagtcgcctttatgacttgactgtgaacaaactaatctctgttaggaacatgatcttgttgggggtggatgt 17720948  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
     ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||    
T  17720947 cggtggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaagagttggtagaggagtttanggctttattact 17720867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 12 - 288
Target Start/End: Complemental strand, 29968486 - 29968209
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||| || |||||| | ||||||||||||| ||||||||||||||| || || |||||||||||  || ||||||    
T  29968486 agagatgggataggtgagggtggagagggatgatttgggtcttgtgttaggaggaaggtgggagatggtgcggataccgatttttggcggaattgttggt 29968387  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgtt-ggggtggatgt 210  Q
    |||||||||||||| | ||||  |||||| ||   |||||| |||||| |||| || ||||||| || ||||| ||  | |||||||| |||||||||||    
T  29968386 gcggagatgttccattgtgtgctcggtttgggagtctttttgacttgagtgttcacaaatcaatctccgttagaaactttttcttgttgggggtggatgt 29968287  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||| ||||||||||||    
T  29968286 gggtggggaggcgttgcggtggcgtaggaggttatgggcttgagaggaggaattggtagaggagtgtagggctttatt 29968209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 138 - 291
Target Start/End: Complemental strand, 37919930 - 37919776
Alignment:
Q  138 tttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgttgggg-tggatgtgggtggggaggcgttgcggtggcgta 236  Q
    ||||||| ||||||| |||||||||||||  |||||||||||||||| |||||||||||||||||| ||||||||||||||| || ||||||||||||||    
T  37919930 tttaggcgcctttttgacttgaatgttaaaaaatcaatttcagttagaaatatgttcttgttgggggtggatgtgggtgggggggtgttgcggtggcgta 37919831  T
Q  237 ggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||    
T  37919830 ggcggttgtgggcttgggaggagaagttggtagaggagtgtagagttttattact 37919776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 37255270 - 37255167
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||| |||||| |||||||  ||| ||||||||| |   |||||||||||||||||||| ||||| || || || ||||||||||| ||| ||||||    
T  37255270 agagatgagataggcgagggtgaggagagttggtttgcgggttgtgttaggaggagggtgggggatggagccgaaaccgatttttggcgagattgttggt 37255171  T
Q  112 gcgg 115  Q
    ||||    
T  37255170 gcgg 37255167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 17055837 - 17055772
Alignment:
Q  215 ggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagg 280  Q
    |||||||||| || ||||||||||||||||||||| || |||||||||||| ||| ||||| ||||    
T  17055837 ggggaggcgtggcagtggcgtaggcggttgtgggcatgagaggaggagttgttaggggagtgtagg 17055772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 34232011 - 34231934
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    ||||||||||||||||  |||| ||||| |||||||||| ||||||||||||  | ||||||||| |||||| |||||    
T  34232011 gggtggggaggcgttgaagtggagtaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttatt 34231934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 4077587 - 4077510
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| |  |||| | ||| ||||||||||||||||||| |||  | ||||||||| ||||||||||||    
T  4077587 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaagaggagttagaggagtgtagggctttatt 4077510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 22819549 - 22819614
Alignment:
Q  215 ggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagg 280  Q
    |||||||||| ||  ||||||||| |||||||||| ||||||||||||||| ||| ||||| ||||    
T  22819549 ggggaggcgtggcaatggcgtaggaggttgtgggcctgggaggaggagttgttaggggagtgtagg 22819614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 31423114 - 31423054
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgg 72  Q
    |||||||||||||| |||||||| ||||| ||||||| |   |||||||||||||||||||    
T  31423114 agagatgggataggcgagggtggggagggatggtttgcgggttgtgttaggaggagggtgg 31423054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 27218952 - 27219023
Alignment:
Q  215 ggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggcttta 286  Q
    |||||||||| |  ||||||||| || ||||||| |||||| |||||| |||||||||||| |||| |||||    
T  27218952 ggggaggcgtgggtgtggcgtagacgattgtgggtttgggaagaggagatggtagaggagtgtaggtcttta 27219023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 27854299 - 27854333
Alignment:
Q  240 ggttgtgggcttgggaggaggagttggtagaggag 274  Q
    ||||||||||||||||||| |||||||||||||||    
T  27854299 ggttgtgggcttgggaggaagagttggtagaggag 27854333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 3764 - 3484
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||||||||| ||||||||| | || |||||||||||||||||||||||||| || || ||||||||||||||| ||||||    
T  3764 agagatgggataggtgagggtggagaggggtggtttgggtcctgcgttaggaggagggtgggagatggtgcggataccgatttttggcgtgattgttggt 3665  T
Q  112 gcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgtt-ggggtggatgt 210  Q
    ||||||| |||||||| |||| ||||||| |||  |||||| |||||| |||  || |||| || || |||||||||||||||||||| |||||||||||    
T  3664 gcggagacgttccactgtgtgcccggtttgggcgtctttttgacttgagtgtacacaaatctatctccgttaggaatatgttcttgttgggggtggatgt 3565  T
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  3564 gggtggggaggcgttgcggtggcgtaggaggttgtgggcctgggaggaggagttggtagaggagtgtagggctttattact 3484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 6e-77; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 24767060 - 24767337
Alignment:
Q  15 gatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggtgcg 114  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||| || |||||  | |  |||||||||||||||||||||||||    
T  24767060 gatgggatatgtgagggtggagagggctggtttggggcgtgtgttaggaggagggtgggtgacggtgctaaaatagatttttggcgtgatcgttggtgcg 24767159  T
Q  115 gagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgttggg-gtggatgtggg 213  Q
    | ||||||||||| |||| ||| ||||| | ||| | | |||||  ||||||| |||||||  ||||||||||||||||||||||||| ||||| |||||    
T  24767160 gtgatgttccactgtgtgaccgttttagtcgcctatatgacttggctgttaacaaatcaatcacagttaggaatatgttcttgttgggcgtggacgtggg 24767259  T
Q  214 tggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    |||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||| ||||| | |||||||    
T  24767260 tggggaggcgttgcggtggcgtcgacggttgtgggcttgggaggaagagttggtagaggagtgtagggttgtattact 24767337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 108 - 291
Target Start/End: Complemental strand, 2554053 - 2553869
Alignment:
Q  108 tggtgcggagatgttccactttgtgtccggtttaggcaccttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgttgggg-tgg 206  Q
    |||||| || |||||||||| |||| ||| ||||||| ||||||| ||||||||||| || ||||||| | ||||||||||||||||||||||||| |||    
T  2554053 tggtgcagaaatgttccactatgtgcccgatttaggcgcctttttgacttgaatgttcacaaatcaatcttagttaggaatatgttcttgttgggggtgg 2553954  T
Q  207 atgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    | ||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||||||||||||    
T  2553953 acgtgggtggggaagcgttgcggtggcgtaggcggttgtgggcttgggagtagaagttggtaaaggagtgtagggctttattact 2553869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 148 - 291
Target Start/End: Complemental strand, 21168574 - 21168431
Alignment:
Q  148 ttttttacttgaatgttaaccaatcaatttcagttaggaatatgttcttgttggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgg 247  Q
    ||||| ||||||||||| || ||||||| || |||||||||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||||||    
T  21168574 tttttgacttgaatgttcacaaatcaatctctgttaggaatatgttcttgttagggtagacgtgggaggggaggcgttgcggtggcgtaggcggttgtgg 21168475  T
Q  248 gcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  21168474 gcttgggaggaggagttggtagaggagtgtagggctttattact 21168431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 2554118 - 2554045
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcaga 85  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  2554118 agagatgggataggtgagggtggagagggatggtttgggacttgtgttaggaggagggtgggagatggtgcaga 2554045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 13938231 - 13938101
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||||| ||||| ||||||||||||||||   |  ||||||||||   ||||||||||||||| || ||||| ||||| |||||| ||||||    
T  13938231 agagatgggataggagagggaggagagggttggtttgcatcaggtgttaggagagaggtgggagatggtgctgagactgacttttgtcgtgattgttggt 13938132  T
Q  112 gcggagatgttccactttgtgtccggtttag 142  Q
    | ||| |||||||  ||||||| || |||||    
T  13938131 gtggaaatgttccgttttgtgtgcgatttag 13938101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 14372619 - 14372719
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||| ||||||| ||||||||| ||||||||||||  |   ||||| |||||||||||||| |||||| | || |||||||||||||| ||| ||||||    
T  14372619 agagacgggatagatgagggtggggagggttggttttcgggttgtgtcaggaggagggtgggggatggttccgatactgatttttggcgggattgttggt 14372718  T
Q  112 g 112  Q
    |    
T  14372719 g 14372719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 17573284 - 17573384
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||      |||||||||||||||||||| ||||| || || || ||||||||||| ||| ||||||    
T  17573284 agagatgggataggtgagggtggggagggctggttttcaggttgtgttaggaggagggtgggggatggagctgataccgatttttggcgcgattgttggt 17573383  T
Q  112 g 112  Q
    |    
T  17573384 g 17573384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 17605962 - 17606062
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||      |||||||||||||||||||| ||||| || || || ||||||||||| ||| ||||||    
T  17605962 agagatgggataggtgagggtggggagggctggtttacaggttgtgttaggaggagggtgggggatggagctgataccgatttttggcgagattgttggt 17606061  T
Q  112 g 112  Q
    |    
T  17606062 g 17606062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 20882661 - 20882761
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||||| |||||||| |||||||||||||     |||||||||||||||||||| ||||| || || ||  |||||||||| ||| ||||||    
T  20882661 agagatgggataggcgagggtggggagggttggtttgcatgttgtgttaggaggagggtgggggatggagccgaaaccaatttttggcgagattgttggt 20882760  T
Q  112 g 112  Q
    |    
T  20882761 g 20882761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 649894 - 649971
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| |  |||| | ||| |||||||||||||||||||||||  | ||||||||| ||||||||||||    
T  649894 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctttatt 649971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 18051277 - 18051354
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| |  |||| | ||| |||||||||||||||||||||||  | ||||||||| ||||||||||||    
T  18051277 gggtggggaggcgtgggagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctttatt 18051354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 293
Target Start/End: Original strand, 15958483 - 15958723
Alignment:
Q  54 tgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggtgcggagatgttccactttgtgtccggtttaggcacctttttt 153  Q
    |||||||||||||||||||| |||||  | || |||||||||||||||||| ||||||| ||  |||||||  ||||||  |  ||||| |  || | |     
T  15958483 tgtgttaggaggagggtgggggatggatccgaaactgatttttggcgtgattgttggtgtggtaatgttccgttttgtgagctctttagtcggctatatg 15958582  T
Q  154 acttgaatgttaaccaatcaatttcagttaggaatatgttcttgttgg-ggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttg 252  Q
    | |||  ||| ||| ||  |||  |||||||| ||||||||||| ||| ||||||||| ||||||||||||| || || |||| | || || ||||| ||    
T  15958583 atttggctgtcaacaaagtaatcacagttaggcatatgttcttgctggaggtggatgttggtggggaggcgtggcagttgcgtcgtcgtttatgggcgtg 15958682  T
Q  253 ggaggaggagttggtagaggagtatagggctttattactga 293  Q
    | ||||  | ||| ||||||| | ||||| |||||||||||    
T  15958683 gtaggaaaacttgttagaggaatgtagggttttattactga 15958723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 26514007 - 26513967
Alignment:
Q  240 ggttgtgggcttgggaggaggagttggtagaggagtatagg 280  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  26514007 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 26513967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 33185898 - 33185835
Alignment:
Q  61 ggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggtgcggagatgttcc 124  Q
    ||||||||||||| ||||| || || |||||||||||||||||| ||||||| || ||||||||    
T  33185898 ggaggagggtgggggatggggctgaaactgatttttggcgtgattgttggtgtggtgatgttcc 33185835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 9199080 - 9199157
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| |  |||| | ||| |||||||||||||||||||||||  | ||||||||| |||||| |||||    
T  9199080 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggagaagttagaggagtgtagggcattatt 9199157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 17079019 - 17079096
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| |  |||| | ||| |||||||||||||||||||||||  | ||||||||  ||||||||||||    
T  17079019 gggtggggaggcgtgggagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagcgtagggctttatt 17079096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 29055828 - 29055763
Alignment:
Q  215 ggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagg 280  Q
    |||||||||| ||  |||||||||||||||||||  | ||||||||||||||||| ||||| ||||    
T  29055828 ggggaggcgtggcaatggcgtaggcggttgtgggtctaggaggaggagttggtaggggagtgtagg 29055763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 286
Target Start/End: Complemental strand, 19350256 - 19350181
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggcttta 286  Q
    |||||||||||||| |  |||||||||  | |||||||||| ||| |||||| |||||||||||| |||| |||||    
T  19350256 gggtggggaggcgtgggtgtggcgtagaagattgtgggcttcggaagaggagatggtagaggagtgtaggtcttta 19350181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 29976843 - 29976918
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggcttta 286  Q
    |||||||||||||| |  |||||||||  | |||||||||||||| ||||||  ||||||||||| |||| |||||    
T  29976843 gggtggggaggcgtgggtgtggcgtagaagattgtgggcttgggaagaggagacggtagaggagtgtaggtcttta 29976918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 13937994 - 13937932
Alignment:
Q  229 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||||||| | || ||||||| ||||||||| |||||||||||||||| |||||  ||||||||    
T  13937994 gtggcgtcgccgcttgtgggtttgggaggaagagttggtagaggagtgtagggaattattact 13937932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 293
Target Start/End: Original strand, 14372787 - 14372901
Alignment:
Q  180 gttaggaatatgttcttgttgggg-tggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtata 278  Q
    ||||| |||||||| || |||||| |||| || ||||| ||||||| |  |||||||   ||||| ||||| ||||| |||||  | |||||||||| ||    
T  14372787 gttagaaatatgtttttattgggggtggaggttggtggtgaggcgtggaagtggcgtcatcggttatgggcgtgggacgaggacctagtagaggagtgta 14372886  T
Q  279 gggctttattactga 293  Q
    |||||||||||||||    
T  14372887 gggctttattactga 14372901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 33185746 - 33185678
Alignment:
Q  212 ggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagg 280  Q
    ||||||||||||| || ||| ||| | || |||||| | |||||||| |||||||||||||||| ||||    
T  33185746 ggtggggaggcgtggcagtgacgtcgccgtttgtggacatgggaggaagagttggtagaggagtgtagg 33185678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 289
Target Start/End: Complemental strand, 41207362 - 41207250
Alignment:
Q  178 cagttaggaatatgttcttgttgggg-tggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagta 276  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||| | ||||||||||| |||||||| ||||||||||||||||     
T  41207362 cagttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcaatggcgtcgtcggttgtgggcatgggaggaagagttggtagaggagtg 41207263  T
Q  277 tagggctttatta 289  Q
    ||||| |||||||    
T  41207262 tagggttttatta 41207250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 28253232 - 28253121
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||||  |||||||| ||||||||||||  |   |||||||||||||||||||| |||||| | || |||||||||||||| ||| || |||    
T  28253232 agagatgggatagacgagggtggggagggttggttttcggtttgtgttaggaggagggtgggggatggttccgatactgatttttggcgggattgtcggt 28253133  T
Q  112 gcggagatgttc 123  Q
    | || |||||||    
T  28253132 gtggtgatgttc 28253121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 40177009 - 40176900
Alignment:
Q  183 aggaatatgttcttgttgggg-tggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtataggg 281  Q
    ||||| ||||||||||||||| |||| |  |||||||  |||| || ||||||| | ||||| ||||  ||||||||||| ||||||||||||| |||||    
T  40177009 aggaagatgttcttgttgggggtggaggatggtgggggagcgtggcagtggcgtcgccggttatgggtgtgggaggaggacttggtagaggagtgtaggg 40176910  T
Q  282 ctttattact 291  Q
    ||||||||||    
T  40176909 ctttattact 40176900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 12646048 - 12645948
Alignment:
Q  12 agagatgggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgatttttggcgtgatcgttggt 111  Q
    |||||||||||||| |||||||| |||| |||||||| |   |||||||||||||||||||||||||| ||    || ||||||||||| ||| ||||||    
T  12646048 agagatgggataggcgagggtggggaggattggtttgcggattgtgttaggaggagggtgggagatggagccacaacagatttttggcgagattgttggt 12645949  T
Q  112 g 112  Q
    |    
T  12645948 g 12645948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 293
Target Start/End: Complemental strand, 28253064 - 28252950
Alignment:
Q  180 gttaggaatatgttcttgttgggg-tggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtata 278  Q
    ||||||| |||||| ||||||||| |||| || ||||| ||||||| |  ||||||| | ||||| ||||| |||||||| ||  | |||||||||| ||    
T  28253064 gttaggactatgtttttgttgggggtggaggttggtggtgaggcgtggtagtggcgtcgtcggttatgggcatgggaggatgacctagtagaggagtgta 28252965  T
Q  279 gggctttattactga 293  Q
    |||||||||||||||    
T  28252964 gggctttattactga 28252950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 17764752 - 17764810
Alignment:
Q  178 cagttaggaatatgttcttg-ttggggtggatgtgggtggggaggcgttgcggtggcgt 235  Q
    |||||||||||||||||||| ||||||||||||| ||||||||| ||| || |||||||    
T  17764752 cagttaggaatatgttcttgtttggggtggatgtcggtggggagacgtggcagtggcgt 17764810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 12807996 - 12808042
Alignment:
Q  229 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagt 275  Q
    |||| ||||| |||||||||| |||||||||| ||||||||||||||    
T  12807996 gtggtgtaggaggttgtgggcgtgggaggaggcgttggtagaggagt 12808042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 36804195 - 36804149
Alignment:
Q  240 ggttgtgggcttgggaggaggagttggtagaggagtatagggcttta 286  Q
    |||||||||| ||||||||||| ||| ||||||||| ||||||||||    
T  36804195 ggttgtgggcgtgggaggaggacttgttagaggagtgtagggcttta 36804149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 44547706 - 44547756
Alignment:
Q  241 gttgtgggcttgggaggaggagttggtagaggagtatagggctttattact 291  Q
    ||||| ||| ||||||||||||||||||||||||| || | ||||||||||    
T  44547706 gttgttggcatgggaggaggagttggtagaggagtgtatgactttattact 44547756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 1380394 - 1380317
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| |  |||| | ||| |||||||||||||||||||||||  | ||||||||| || ||| |||||    
T  1380394 gggtggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtaaggccttatt 1380317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 2999576 - 2999653
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| |  |||| | ||| |||||||||| ||||||||||||  | ||||||||| |||||| |||||    
T  2999576 gggtggggaggcgtggaagtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttatt 2999653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 33515841 - 33515902
Alignment:
Q  18 gggataggtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatgg 79  Q
    |||||| |||||||||| ||||||||||||  |   |||||||||||||||||||| |||||    
T  33515841 gggatatgtgagggtggggagggttggtttacggattgtgttaggaggagggtgggggatgg 33515902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 18844490 - 18844530
Alignment:
Q  240 ggttgtgggcttgggaggaggagttggtagaggagtatagg 280  Q
    |||||||||| ||||||||||||||||| ||||||| ||||    
T  18844490 ggttgtgggcgtgggaggaggagttggtggaggagtgtagg 18844530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 7840 - 7763
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| | ||||| | ||| |||||||||| ||||||||||||  | ||||||||| ||||||||||||    
T  7840 gggtggggaggcgtggaggtggaggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggctttatt 7763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 12774 - 12697
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| | ||||| | ||| |||||||||| ||||||||||||  | ||||||||| ||||||||||||    
T  12774 gggtggggaggcgtggaggtggtggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggctttatt 12697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 2701 - 2777
Alignment:
Q  211 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||| |  |||| | ||| |||||||||||||| ||||||||  | ||||||||||||||||||||||    
T  2701 gggtggggaggcgtgggagtggaggaggaggttgtgggcttgg-aggaggaggagttagaggagtatagggctttatt 2777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 182412 - 182364
Alignment:
Q  240 ggttgtgggcttgggaggaggagttggtagaggagtatagggctttatt 288  Q
    |||||||||||||||||||||||  | ||||||||| ||||||||||||    
T  182412 ggttgtgggcttgggaggaggaggagttagaggagtgtagggctttatt 182364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 6369 - 6331
Alignment:
Q  242 ttgtgggcttgggaggaggagttggtagaggagtatagg 280  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  6369 ttgtgggtgtgggaggaggagttggtagaggagtatagg 6331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University