View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20942_low_16 (Length: 268)
Name: NF20942_low_16
Description: NF20942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20942_low_16 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 1969213 - 1968954
Alignment:
| Q |
1 |
attagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1969213 |
attagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcg |
1969114 |
T |
|
| Q |
101 |
gcgcccatgatgtaataacaaaacctttctccttggttctctccaagaaccc------agatggtaaaaactgcaaagtgtcaatgtcattttctgctga |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1969113 |
gcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatccagatggtaaaaactgcaaagtgtcaatatcattttctgctga |
1969014 |
T |
|
| Q |
195 |
aagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaatttttt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1969013 |
aagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaatttttt |
1968954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 2007814 - 2008059
Alignment:
| Q |
7 |
ggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgccc |
106 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2007814 |
ggcacaccgtgcaccacactctcaagggttgaattccagccacaatgcgtcaagaacccaccaactgagttgtgacttaggatttgaatctgcggcgccc |
2007913 |
T |
|
| Q |
107 |
atgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagatatcctgc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2007914 |
atgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatcctgc |
2008013 |
T |
|
| Q |
207 |
actagatgaactgctactcggtgctcgcaaaacccacgagaatttt |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2008014 |
actagatgaactgctactcggtgctcgcaaaacccacaagaatttt |
2008059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 2004428 - 2004676
Alignment:
| Q |
1 |
attagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcg |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| || || | ||||||||||||||||||||||||||||| |
|
|
| T |
2004428 |
attagtggcacaccatgcaccacactctctagggttgaattccagccacaatgagtcaagaacccgccgactgagttgtgacttaggatttgaatctgcg |
2004527 |
T |
|
| Q |
101 |
gcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagata |
200 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||| ||||||| |||||||| ||| |
|
|
| T |
2004528 |
gcacccatgatgtaatgacaaaacctttctccttggttctctccaagaacccggatggcaaaaactgccaagtgtcagcatcattttgtgctgaaaaata |
2004627 |
T |
|
| Q |
201 |
tcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaat |
249 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||| ||||| |
|
|
| T |
2004628 |
tcctgcactagatgaactactacttggtgctcgcaaaacccacaagaat |
2004676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 1965271 - 1965030
Alignment:
| Q |
1 |
attagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcg |
100 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||||||||| ||||| ||||| ||| ||||||| || |||||||| | ||||| |||||||||||||| | |
|
|
| T |
1965271 |
attagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaaggatttgaatctgag |
1965172 |
T |
|
| Q |
101 |
gcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagata |
200 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||| |||| |||||||| |||||||||||| |
|
|
| T |
1965171 |
gtgcccatgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagatggtaaaaatttcaaagggtcaccgtcattttgtgctgaaagata |
1965072 |
T |
|
| Q |
201 |
tcctgcactagatgaactgctactcggtgctcgcaaaaccca |
242 |
Q |
| |
|
| |||||||||||||||| ||||| ||||||| || |||||| |
|
|
| T |
1965071 |
tgctgcactagatgaactactacttggtgctcacacaaccca |
1965030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 2011423 - 2011664
Alignment:
| Q |
1 |
attagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcg |
100 |
Q |
| |
|
||||||||||| ||||| | |||||| ||||| ||||| |||| ||||| ||| ||||||| || |||| ||| | ||||| |||||||||||||| | |
|
|
| T |
2011423 |
attagtggcaccccatgaaccacactttcaagtgttgagctccaaccacagtgactcaagaacccgccaactgaactatgactaaggatttgaatctgag |
2011522 |
T |
|
| Q |
101 |
gcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagata |
200 |
Q |
| |
|
| |||||||||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||| || |||| |||| ||||||| |||||||||||| |
|
|
| T |
2011523 |
gtgcccatgatgtaatgacaaaaccttcctctttggttctctccaaaaacccagatggtaaaaattgtaaagcatcaacatcattttgtgctgaaagata |
2011622 |
T |
|
| Q |
201 |
tcctgcactagatgaactgctactcggtgctcgcaaaaccca |
242 |
Q |
| |
|
| ||||| |||||||||| ||||| |||||||||| |||||| |
|
|
| T |
2011623 |
tgctgcattagatgaactactacttggtgctcgcacaaccca |
2011664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 2437013 - 2436818
Alignment:
| Q |
1 |
attagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||| ||| ||||||| |||||||||| ||| | |
|
|
| T |
2437013 |
attagtggcacaccatgcaccacactctcaagggttgaattccagccacagtgactcaagaaaccaccaactgatctgtgactaaggatttgaacctgtg |
2436914 |
T |
|
| Q |
101 |
gcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaa |
196 |
Q |
| |
|
| |||||||||| |||||| | |||| |||||||||||||| | ||||||| |||||||||| ||||||| ||||| ||||||| |||||||| |
|
|
| T |
2436913 |
gtgcccatgatggaataaccatcccttgatccttggttctctctatgaacccacatggtaaaaattgcaaagggtcaacatcattttgtgctgaaa |
2436818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 1963601 - 1963430
Alignment:
| Q |
1 |
attagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcg |
100 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||| |||||||||| ||| || |||||||| || ||||||| |||||||||||||| | |
|
|
| T |
1963601 |
attagtggcacaccatacaccacactctcaagggttgaattccaaccacaatgagacaaaaacccaccaatggaactgtgactaaggatttgaatctgtg |
1963502 |
T |
|
| Q |
101 |
gcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaag |
172 |
Q |
| |
|
| |||||||||| || ||| | |||| ||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
1963501 |
gtgcccatgatggaacaaccatcccttgttccttggttctctccaaaaacccagatggtaaaaactgtaaag |
1963430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 2014828 - 2015005
Alignment:
| Q |
1 |
attagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||| ||| |||||| |||||||||||||| | |
|
|
| T |
2014828 |
attagtggcacaccatgcaacacactctcaagcattgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctgtg |
2014927 |
T |
|
| Q |
101 |
gcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaa |
178 |
Q |
| |
|
| |||||||||| |||||| | |||| ||||| ||||||||||||||||| || |||||||| || |||| ||||| |
|
|
| T |
2014928 |
gtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaattgtaaagggtcaa |
2015005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 2018211 - 2018388
Alignment:
| Q |
1 |
attagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||| ||| |||||| |||||||||||||| | |
|
|
| T |
2018211 |
attagtggcacaccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctgtg |
2018310 |
T |
|
| Q |
101 |
gcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaa |
178 |
Q |
| |
|
| |||||||||| |||||| | |||| ||||| |||||||||||||||| || |||||||| || |||| ||||| |
|
|
| T |
2018311 |
gtgcccatgatggaataaccatcccttgttccttttttctctccaagaaccctgaaggtaaaaattgtaaagggtcaa |
2018388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 3770193 - 3770260
Alignment:
| Q |
24 |
actctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggattt |
91 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || || |||||||| |||| |||||||||||||||| |
|
|
| T |
3770193 |
actctcaagtgttgaattccaaccacaatgtgttaaaaatccacctgttgaattgtgacttaggattt |
3770260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 10201869 - 10201937
Alignment:
| Q |
7 |
ggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgag |
75 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||||||| ||||||||| ||| || || ||||||||| |
|
|
| T |
10201869 |
ggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcacaaaccctccaattgag |
10201937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 10208942 - 10209010
Alignment:
| Q |
7 |
ggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgag |
75 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||||||| ||||||||| ||| || || ||||||||| |
|
|
| T |
10208942 |
ggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcacaaaccctccaattgag |
10209010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 3708002 - 3707935
Alignment:
| Q |
24 |
actctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggattt |
91 |
Q |
| |
|
||||||||| || |||||||| |||||||| || || |||||||| |||| |||||||||||||||| |
|
|
| T |
3708002 |
actctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaattgtgacttaggattt |
3707935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 3777860 - 3778002
Alignment:
| Q |
24 |
actctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaa |
123 |
Q |
| |
|
|||||| || || |||||||| |||||||| || || |||||||| |||| |||| |||||||||||| ||||||| ||||| | | || ||| || |
|
|
| T |
3777860 |
actctccagtgtcgaattccaaccacaatgtgttaaaaatccaccggttgaaatgtggcttaggatttgagtctgcggggcccaaaaaggaacaactaac |
3777959 |
T |
|
| Q |
124 |
cctttctccttggttctctccaagaacccagatggtaaaaact |
166 |
Q |
| |
|
|||| || ||||||||||| |||||||| ||||||||||| |
|
|
| T |
3777960 |
ccttgttctttggttctctctaagaacccttgtggtaaaaact |
3778002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 33005106 - 33005188
Alignment:
| Q |
25 |
ctctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgccca |
107 |
Q |
| |
|
||||| || ||||||||||| |||||||| || || ||||||||| |||| |||| |||||||||||| |||| || ||||| |
|
|
| T |
33005106 |
ctctcgagtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtggcttaggatttgagtctgtggtgccca |
33005188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 5902777 - 5902577
Alignment:
| Q |
1 |
attagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcg |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||||||| ||| ||||||| || ||| |||||| | |
|
|
| T |
5902777 |
attagtggcacaccatgcatcacactctcaaggattgaattccagccacagtgactcaagaatccaccaactgatctgtgactaagtgtttcaatctgag |
5902678 |
T |
|
| Q |
101 |
gcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagata |
200 |
Q |
| |
|
| |||||||||| |||||| | |||| |||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
5902677 |
gtgcccatgatggaataaccatcccttgctccttggttctctccaagaacccaggtggtaaaaactgcaaaagatcaacatcattttctgctgaaagata |
5902578 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
5902577 |
t |
5902577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 5906261 - 5906061
Alignment:
| Q |
1 |
attagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcg |
100 |
Q |
| |
|
||||||||||||||||||| | | ||||||||| ||||| |||| ||||||||| ||||||||||||||| ||| ||||||| ||||||| |||||| | |
|
|
| T |
5906261 |
attagtggcacaccatgcatcgcgctctcaaggattgaactccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgag |
5906162 |
T |
|
| Q |
101 |
gcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagata |
200 |
Q |
| |
|
| |||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||| |||| || |||| || |||| |||||||||||| |
|
|
| T |
5906161 |
gtgcccatgatggaataaccattccttgctccttggttctctccaagaacccagatggtaaaacctgcgaaagatcaacatcgttttgtgctgaaagata |
5906062 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
5906061 |
t |
5906061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 3557 - 3516
Alignment:
| Q |
33 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
74 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3557 |
ggttgaattccatccacaatgagtcaagaatccaccaattga |
3516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 4461417 - 4461458
Alignment:
| Q |
33 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
74 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4461417 |
ggttgaattccatccacaatgagtcaagaatccaccaattga |
4461458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 4622436 - 4622476
Alignment:
| Q |
33 |
ggttgaattccagccacaatgagtcaagaatccaccaattg |
73 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4622436 |
ggttgaattccatccacaatgagtcaagaatccaccaattg |
4622476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 4557419 - 4557460
Alignment:
| Q |
33 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
74 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4557419 |
ggttgagttccatccacaatgagtcaagaatccaccaattga |
4557460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 4592525 - 4592566
Alignment:
| Q |
33 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
74 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4592525 |
ggttgagttccatccacaatgagtcaagaatccaccaattga |
4592566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 4490191 - 4490152
Alignment:
| Q |
35 |
ttgaattccagccacaatgagtcaagaatccaccaattga |
74 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4490191 |
ttgagttccatccacaatgagtcaagaatccaccaattga |
4490152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 4267004 - 4266966
Alignment:
| Q |
33 |
ggttgaattccagccacaatgagtcaagaatccaccaat |
71 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
4267004 |
ggttgaattccatccgcaatgagtcaagaatccaccaat |
4266966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 4299664 - 4299618
Alignment:
| Q |
28 |
tcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
74 |
Q |
| |
|
|||| |||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
4299664 |
tcaatggttgagttccatccacagtgagtcaagaatccaccaattga |
4299618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 4626240 - 4626286
Alignment:
| Q |
28 |
tcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
74 |
Q |
| |
|
|||| |||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
4626240 |
tcaatggttgagttccatccacaatgagttaagaatccaccaattga |
4626286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 4493250 - 4493287
Alignment:
| Q |
34 |
gttgaattccagccacaatgagtcaagaatccaccaat |
71 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
4493250 |
gttgagttccatccacaatgagtcaagaatccaccaat |
4493287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 4506151 - 4506192
Alignment:
| Q |
33 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
74 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
4506151 |
ggttgagttccatccgcaatgagtcaagaatccaccaattga |
4506192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 4585930 - 4585971
Alignment:
| Q |
33 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
74 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
4585930 |
ggttgagttccatccacagtgagtcaagaatccaccaattga |
4585971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 4613556 - 4613515
Alignment:
| Q |
33 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
74 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
4613556 |
ggttgagttccatccacaatgagtcaagaatccgccaattga |
4613515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 845007 - 845059
Alignment:
| Q |
22 |
acactctcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
74 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||| || || ||||||||||| |
|
|
| T |
845007 |
acactttcaagtgttgaattccaaccacaatgagttaaaaacccaccaattga |
845059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 870291 - 870343
Alignment:
| Q |
22 |
acactctcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
74 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||| || || ||||||||||| |
|
|
| T |
870291 |
acactttcaagtgttgaattccaaccacaatgagttaaaaacccaccaattga |
870343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 41511490 - 41511444
Alignment:
| Q |
28 |
tcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
74 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
41511490 |
tcaagtgttgaattccaaccacaatgagtcaaaaatccaccaattga |
41511444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 3086715 - 3086755
Alignment:
| Q |
34 |
gttgaattccagccacaatgagtcaagaatccaccaattga |
74 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3086715 |
gttgagttccatccacaatgagtcaagaatccaccaattga |
3086755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 4529 - 4483
Alignment:
| Q |
28 |
tcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
74 |
Q |
| |
|
|||| |||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
4529 |
tcaatggttgagttccatccgcaatgagtcaagaatccaccaattga |
4483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 11635 - 11687
Alignment:
| Q |
22 |
acactctcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
74 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
11635 |
acactctcaagaactgaattccaaccacaatgagtcaaaaatgcaccaattga |
11687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 20155290 - 20155250
Alignment:
| Q |
34 |
gttgaattccagccacaatgagtcaagaatccaccaattga |
74 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
20155290 |
gttgaattccatccacaatgtgtcaagaatcctccaattga |
20155250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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