View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20942_low_18 (Length: 258)

Name: NF20942_low_18
Description: NF20942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20942_low_18
NF20942_low_18
[»] chr3 (3 HSPs)
chr3 (34-244)||(48366763-48366973)
chr3 (1-32)||(10083976-10084007)
chr3 (1-32)||(10190899-10190930)
[»] chr6 (1 HSPs)
chr6 (1-34)||(28968199-28968232)
[»] chr8 (1 HSPs)
chr8 (1-32)||(14632967-14632998)
[»] chr5 (3 HSPs)
chr5 (1-32)||(7151338-7151369)
chr5 (1-32)||(12398605-12398636)
chr5 (1-32)||(19456366-19456397)
[»] chr4 (1 HSPs)
chr4 (1-32)||(7392120-7392151)
[»] chr2 (1 HSPs)
chr2 (1-32)||(43374482-43374513)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 48366973 - 48366763
Alignment:
Q  34 tgaaattctgcaattcaagaactaccttgcgggatgtgtgatgcgcagtgaccagaaaaacttgtatcatcaattttcttcattctttgtgccattctca 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48366973 tgaaattctgcaattcaagaactaccttgcgggatgtgtgatgcgcagtgaccagaaaaacttgtatcatcaattttcttcattctttgtcccattctca 48366874  T
Q  134 tcttatctcccaagcatgctggcattcaaatttcttcttataaaatgcactttttattgaagaaaataagttaatttgatagtttataaatttagcgcag 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48366873 tcttatctcccaagcatgctggcattcaaatttcttcttataaaatgcactttttattgaagaaaataagttaatttgatagtttataaatttagcgcag 48366774  T
Q  234 aaccaaatcac 244  Q
    |||||||||||    
T  48366773 aaccaaatcac 48366763  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 10083976 - 10084007
Alignment:
Q  1 aaactccaagatcccaagccaaccccaaatgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  10083976 aaactccaagatcccaagccaaccccaaatgg 10084007  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 10190899 - 10190930
Alignment:
Q  1 aaactccaagatcccaagccaaccccaaatgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  10190899 aaactccaagatcccaagccaaccccaaatgg 10190930  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 28968199 - 28968232
Alignment:
Q  1 aaactccaagatcccaagccaaccccaaatggtt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  28968199 aaactccaagatcccaagccaaccccaaatggtt 28968232  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 14632998 - 14632967
Alignment:
Q  1 aaactccaagatcccaagccaaccccaaatgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  14632998 aaactccaagatcccaagccaaccccaaatgg 14632967  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 7151369 - 7151338
Alignment:
Q  1 aaactccaagatcccaagccaaccccaaatgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  7151369 aaactccaagatcccaagccaaccccaaatgg 7151338  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 12398605 - 12398636
Alignment:
Q  1 aaactccaagatcccaagccaaccccaaatgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  12398605 aaactccaagatcccaagccaaccccaaatgg 12398636  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 19456366 - 19456397
Alignment:
Q  1 aaactccaagatcccaagccaaccccaaatgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  19456366 aaactccaagatcccaagccaaccccaaatgg 19456397  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 7392120 - 7392151
Alignment:
Q  1 aaactccaagatcccaagccaaccccaaatgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  7392120 aaactccaagatcccaagccaaccccaaatgg 7392151  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 43374482 - 43374513
Alignment:
Q  1 aaactccaagatcccaagccaaccccaaatgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  43374482 aaactccaagatcccaagccaaccccaaatgg 43374513  T

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