View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20942_low_2 (Length: 564)

Name: NF20942_low_2
Description: NF20942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20942_low_2
NF20942_low_2
[»] chr3 (2 HSPs)
chr3 (13-324)||(24712808-24713120)
chr3 (63-153)||(31424453-31424544)
[»] chr1 (1 HSPs)
chr1 (303-549)||(10655441-10655687)
[»] chr8 (2 HSPs)
chr8 (63-155)||(17819575-17819667)
chr8 (173-213)||(17819511-17819551)
[»] chr4 (2 HSPs)
chr4 (63-153)||(48567403-48567494)
chr4 (177-215)||(48567334-48567372)
[»] chr2 (1 HSPs)
chr2 (77-154)||(11199758-11199835)
[»] chr7 (1 HSPs)
chr7 (227-257)||(44755922-44755952)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 324
Target Start/End: Original strand, 24712808 - 24713120
Alignment:
Q  13 agcaaaggtgatgggaaaaggtggtttgatttagagaggtgnnnnnnn---gtggtgagcagcaagcgaagggggtctatggatttcgttttcagtgacc 109  Q
    ||||||||||||||||||||||||||||||||||||||||           |||||||||||| |||||| | ||||||||||||||||||||||||| |    
T  24712808 agcaaaggtgatgggaaaaggtggtttgatttagagaggttttttttttttgtggtgagcagcgagcgaatgaggtctatggatttcgttttcagtgatc 24712907  T
Q  110 gttcgcgatggagtttgttttaggtggtaaagttggtttaggtggtgaagaggtggtttgatttaggtcttggttaggtgattggtgtataatgtctttt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24712908 gttcgcgatggagtttgttttaggtggtaaagttggtttaggtggtgaagaggtggtttgatttaggtcttggttaggtgattggtgtataatgtctttt 24713007  T
Q  210 atggtgnnnnnnnnnnngtgtttcgcctatatacaacgccttttgttttgtaatctcttataccagactctgttcatcttgagcaggaccaagttttaaa 309  Q
    ||||||           ||||||||||||||||| ||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||    
T  24713008 atggtg--ttttttttagtgtttcgcctatatacgacgccttttgttttgtaatctcttatactggtctctgttcatcttgagcaggaccaagttttaaa 24713105  T
Q  310 taaattttgccattt 324  Q
    |||||||||||||||    
T  24713106 taaattttgccattt 24713120  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 31424453 - 31424544
Alignment:
Q  63 ggtgagcagcaagcgaaggggg-tctatggatttcgttttcagtgaccgttcgcgatggagtttgttttaggtggtaaagttggtttaggtg 153  Q
    |||||| ||| ||||||||||| | |||||||||||| |||| || | |||   ||||||||||| |||||||||| |||||||||| ||||    
T  31424453 ggtgagtagcgagcgaaggggggtgtatggatttcgtgttcaatggctgtttatgatggagtttgatttaggtggtgaagttggttttggtg 31424544  T

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Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 303 - 549
Target Start/End: Complemental strand, 10655687 - 10655441
Alignment:
Q  303 ttttaaataaattttgccatttnnnnnnntgtagtgcacgtgactcaaggtagcatcaaattttatttcttttcttcaacttannnnnnnacctatagat 402  Q
    |||| |||||||||||||||||       || ||||||| |||||||||||||||||||||||||||||||||||||||||||       ||||||| ||    
T  10655687 tttttaataaattttgccatttaaaaaaatggagtgcacttgactcaaggtagcatcaaattttatttcttttcttcaacttatttttttacctatatat 10655588  T
Q  403 tcaattcttagaagtaataaagtattgtgagcttatcaatctaattgaaatccttttnnnnnnnggtgattcaattctgaaatcgaatatttgaatcaag 502  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       ||||||| ||||||||||||||||||||||||||||    
T  10655587 tcaattcttagaagtgataaagtattgtgagcttatcaatctaattgaaatccttttaaaaaaaggtgattaaattctgaaatcgaatatttgaatcaag 10655488  T
Q  503 gttttcaactgcatcaatctatcttgattcttggataacaggaatca 549  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||    
T  10655487 gttttcaactgcgtcaatctatcttgattcttggataacaagaatca 10655441  T

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Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 17819667 - 17819575
Alignment:
Q  63 ggtgagcagcaagcgaagggggtctatggatttcgttttcagtgaccgttcgcgatggagtttgttttaggtggtaaagttggtttaggtggt 155  Q
    |||||||||| |||||||||||| ||||||||||||||||||||   ||| ||||||||||||| |||||||||| |||||||||| ||||||    
T  17819667 ggtgagcagcgagcgaagggggtttatggatttcgttttcagtggttgtttgcgatggagtttgatttaggtggtgaagttggttttggtggt 17819575  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 17819551 - 17819511
Alignment:
Q  173 taggtcttggttaggtgattggtgtataatgtcttttatgg 213  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  17819551 taggttttggttaggtgattggtgtatgatgtcttttatgg 17819511  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 48567494 - 48567403
Alignment:
Q  63 ggtgagcagcaagcgaagggggtctatggatttcgttttcagtgaccg-ttcgcgatggagtttgttttaggtggtaaagttggtttaggtg 153  Q
    |||||||||| |||||| ||||| |||||||||||||||||||  ||| ||   |||| |||||| |||||||||| |||||||||| ||||    
T  48567494 ggtgagcagcgagcgaaaggggtttatggatttcgttttcagttgccgtttaatgatgaagtttgatttaggtggtgaagttggttttggtg 48567403  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 48567372 - 48567334
Alignment:
Q  177 tcttggttaggtgattggtgtataatgtcttttatggtg 215  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  48567372 tcttggttaggtgatgggtgtttaatgtcttttatggtg 48567334  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 11199835 - 11199758
Alignment:
Q  77 gaagggggtctatggatttcgttttcagtgaccgttcgcgatggagtttgttttaggtggtaaagttggtttaggtgg 154  Q
    ||||| ||| ||||||||| ||||| |||| |  |||||||||||||||| |||||| ||| |||||||||| |||||    
T  11199835 gaaggtggtttatggattttgtttttagtggcgtttcgcgatggagtttgatttaggcggtgaagttggttttggtgg 11199758  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 44755922 - 44755952
Alignment:
Q  227 gtgtttcgcctatatacaacgccttttgttt 257  Q
    |||||||||||||||||||||||||||||||    
T  44755922 gtgtttcgcctatatacaacgccttttgttt 44755952  T

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