View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20942_low_24 (Length: 237)
Name: NF20942_low_24
Description: NF20942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20942_low_24 |
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| [»] chr3 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 1225146 - 1224928
Alignment:
| Q |
19 |
tccattaggcatgaaatcataaacaagaagcaactcacctttctcaacacaccaacccaacaactgagccaaattcttgtgccttaaaccagcaatgatg |
118 |
Q |
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| T |
1225146 |
tccattaggcatgaaatcataaacaagaagcaactcacctttctcaacacaccaacccaacaactgagccaaattcttgtgccttaaaccagcaatgatg |
1225047 |
T |
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| Q |
119 |
ttcaattcagagagaaactcggtctttccttcatgtgaatgcctcgatcttttcactgcagcaatggttccagacgatataaagaacgctttatacacag |
218 |
Q |
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| T |
1225046 |
ttcaattcagagagaaactcggtctttccttcatgtgaatgcctcgatcttttcactgcagcaatggttccagacgatataaagaacgctttatacaaag |
1224947 |
T |
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| Q |
219 |
ttccaaacgaaccgtgacc |
237 |
Q |
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| T |
1224946 |
ttccaaacgaaccgtgacc |
1224928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 182
Target Start/End: Complemental strand, 23914950 - 23914803
Alignment:
| Q |
35 |
tcataaacaagaagcaactcacctttctcaacacaccaacccaacaactgagccaaattcttgtgccttaaaccagcaatgatgttcaattcagagagaa |
134 |
Q |
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| T |
23914950 |
tcatacacaagtaacaattcacctttctcaacacaccaacctaaaagttgaaccaaattcttgtgccttaaaccagctataatcgataactcggataaaa |
23914851 |
T |
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| Q |
135 |
actcggtctttccttcatgtgaatgcctcgatcttttcactgcagcaa |
182 |
Q |
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| T |
23914850 |
actcggtttttccttcatgtgaatgtcttgatcttttaacagcagcaa |
23914803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 41963690 - 41963472
Alignment:
| Q |
19 |
tccattaggcatgaaatcataaacaagaagcaactcacctttctcaacacaccaacccaacaactgagccaaattcttgtgccttaaaccagcaatgatg |
118 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963690 |
tccattaggcatgaaatcataaaaaagaagcaactcacctttctcaacagaccaacccaacaactgagccaaattcttgtgccttaaaccagcaatgatg |
41963591 |
T |
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| Q |
119 |
ttcaattcagagagaaactcggtctttccttcatgtgaatgcctcgatcttttcactgcagcaatggttccagacgatataaagaacgctttatacacag |
218 |
Q |
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| T |
41963590 |
ttcaattcagagagaaactcggtctttccttcatgtgaatgcctcgatcttttcactgcagcaatggttccagacgatataaagaacgctttatacacag |
41963491 |
T |
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| Q |
219 |
ttccaaacgaaccgtgacc |
237 |
Q |
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| T |
41963490 |
ttccaaatgaaccgtgacc |
41963472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 22897520 - 22897561
Alignment:
| Q |
19 |
tccattaggcatgaaatcataaacaagaagcaactcaccttt |
60 |
Q |
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| T |
22897520 |
tccattaggcatgtaatcatagaccagaagcaactcaccttt |
22897561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 28279122 - 28279062
Alignment:
| Q |
23 |
ttaggcatgaaatcataaacaagaagcaactcacctttctcaacacaccaacccaacaact |
83 |
Q |
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| T |
28279122 |
ttaggcataaactcataaacaagaagaaactcacctttttcatggcaccaacctaacaact |
28279062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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