View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20942_low_6 (Length: 366)
Name: NF20942_low_6
Description: NF20942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20942_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 4835178 - 4835516
Alignment:
| Q |
19 |
agctgggagtaggggttgtctgtgtctttgctaagctaacatttctagcactattaattnnnnnnntggtgtatttgggttacatatttggtactgtcat |
118 |
Q |
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| T |
4835178 |
agctgggagtaggggttgtctgtgtctttgctaagataacttttctagcactattaattaaaaaagtggtgtatttgggttacatatttggtactgtcat |
4835277 |
T |
|
| Q |
119 |
cactgtaaaatctgggcttaatgaagcagcacagccgcaaaattagtagaatgcgtaaacaacaagtaaacatgtttctttttctgtagctagcttaatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4835278 |
cactgtaaaatctgggcttaatgaagcagcacagccgcaaaattagtagaatgcgtaaacaacaagtaaacatgtttctttttctgtagctagcttaatt |
4835377 |
T |
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| Q |
219 |
tacaacaacaaaactgtagtcatggattgctgaattatagtgactgaccctttacttcaacaaactagggtaggcttggtcttctttattaatcaacgtc |
318 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4835378 |
tacatcaacaaaactgtagtcatggattgctgaattatagtgactgaccctttacttcaacaaactagggtaggcttggtcttctttattaatcaacgtc |
4835477 |
T |
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| Q |
319 |
tctactttctttttgtatcaattattactatagtattat |
357 |
Q |
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| T |
4835478 |
tctactttctttttgtatcaattattattatagtattat |
4835516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 34126432 - 34126356
Alignment:
| Q |
229 |
aaactgtagtcatggattgctgaattatagtgactgaccctttacttcaacaaactagggtaggcttggtcttcttta |
306 |
Q |
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| T |
34126432 |
aaactgtagtcatggatcgctgaattatggtgacttaccctttacatcaacaaacta-ggtatgcttggccttcttta |
34126356 |
T |
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