View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20942_low_8 (Length: 359)
Name: NF20942_low_8
Description: NF20942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20942_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 309
Target Start/End: Complemental strand, 19306145 - 19305848
Alignment:
| Q |
13 |
aatatgctcgacagaccgtacgtaatacccacaaagaaaatatatataatacaaaagcgaattcaaacacttgaaattacatatgactcgatatttattc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19306145 |
aatatgctcgacagaccgtacgtaatacccacaaagaaaatatatataatagaaaagtgaattcaaacacttgaaattacatattactcgatatttattc |
19306046 |
T |
|
| Q |
113 |
attagatgtgatcaaatacataatcnnnnnnn-gaacaacatataatattaatgaacagagccagccacagagaaagtggaatggactcaaaattacaaa |
211 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19306045 |
attagatgtgatcaaatacataatcctttttttgaacagcatataatattaatgaacagagctagccacagagaaagtggaatggactcaaaattacaaa |
19305946 |
T |
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| Q |
212 |
ggagtaatacatacctcgcacctacaatagtacatcacctaccaaaacaaataaaacaatcccatcaacagaagaacctaagattaaaatccccacaa |
309 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
19305945 |
ggagtaatacataccccgcacctacaatagtacatcacctaccaaaacaaataaaacaatcccactaacagaaggacctaagattaaaatccccacaa |
19305848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 25812054 - 25812276
Alignment:
| Q |
13 |
aatatgctcgacagaccgtacgtaatacccacaaagaaaatatatataatacaaaagcgaattcaaacacttgaaattacatatgactcgatatttattc |
112 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25812054 |
aatatgctcaacagaccgtacgtaatacccacaaagaaaatatatataatagaaaagtcaattcaaacacttgaaattacatatgactcgatatttattc |
25812153 |
T |
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| Q |
113 |
attagatgtgatcaaatacataat-cnnnnnnngaacaacatataatattaatgaacagagccagccacagagaaagtggaatggactcaaaattacaaa |
211 |
Q |
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|||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25812154 |
attagatgtgatcaaatacataatcctttttttgaacagcatataatattaatgaacagagccagccacagagaaagtggaatggactcaaaattacaaa |
25812253 |
T |
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| Q |
212 |
ggagtaatacatacctcgcacct |
234 |
Q |
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||||||||||||||| ||||||| |
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| T |
25812254 |
ggagtaatacataccccgcacct |
25812276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 7142760 - 7142806
Alignment:
| Q |
76 |
caaacacttgaaattacatatgactcgatatttattcattagatgtga |
123 |
Q |
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| T |
7142760 |
caaacacttgaaattacata-gactcgatatttcttcattggatgtga |
7142806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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