View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20942_low_9 (Length: 356)
Name: NF20942_low_9
Description: NF20942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20942_low_9 |
 | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 41481486 - 41481816
Alignment:
| Q |
8 |
agagaaagagagtcttgctcaagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttccttacaaattg |
107 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41481486 |
agagaaagagagccttgctcaagagaaaagtcatcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattg |
41481585 |
T |
|
| Q |
108 |
agaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtggnnnnn |
207 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41481586 |
agagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtgg-tttt |
41481684 |
T |
|
| Q |
208 |
nnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttgagttcacgg |
307 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41481685 |
ttccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgtttatatttcacgtttccgctagtgtctattttgagttcacgg |
41481784 |
T |
|
| Q |
308 |
aaaagggaaattgtgcaggcatttcccaacaa |
339 |
Q |
| |
|
| ||||||||| ||||||||||||||||||| |
|
|
| T |
41481785 |
aggagggaaattatgcaggcatttcccaacaa |
41481816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 36167485 - 36167813
Alignment:
| Q |
8 |
agagaaagagagtcttgctcaagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttccttacaaattg |
107 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36167485 |
agagaaagagagccttgctcaagagaaaagtcatcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattg |
36167584 |
T |
|
| Q |
108 |
agaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtggnnnnn |
207 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36167585 |
agagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaaggg-tccgtgg-tttt |
36167682 |
T |
|
| Q |
208 |
nnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttgagttcacgg |
307 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36167683 |
ttccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgtttatatttcacgtttccgctagtgcctattttgagttcacgg |
36167782 |
T |
|
| Q |
308 |
aaaagggaaattgtgcaggcatttcccaaca |
338 |
Q |
| |
|
| ||||||||| |||||||||||||||||| |
|
|
| T |
36167783 |
aggagggaaattatgcaggcatttcccaaca |
36167813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 4 - 333
Target Start/End: Complemental strand, 18951453 - 18951129
Alignment:
| Q |
4 |
caagagagaaagagagtcttgctcaagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttccttacaa |
103 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18951453 |
caagagagaaaaagagtcttgtttaagagaaaagtcatcctcgtagagagttttctcttgagggaaataatgagccaatttgtgagagtgttccttacaa |
18951354 |
T |
|
| Q |
104 |
attgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtggn |
203 |
Q |
| |
|
||||||| ||| ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||| |
|
|
| T |
18951353 |
attgagagataaattatagtgagatcaacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtgg- |
18951255 |
T |
|
| Q |
204 |
nnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttgagttc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18951254 |
ttttttccctttctcacattgagaaggttttccatgctaaaattc----tgtgtcattacgcttatatttcatgtttccgctagtgcctattttgagttc |
18951159 |
T |
|
| Q |
304 |
acggaaaagggaaattgtgcaggcatttcc |
333 |
Q |
| |
|
||||| ||| ||||| ||||||||||||| |
|
|
| T |
18951158 |
acggaggaggcaaattatgcaggcatttcc |
18951129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 54967546 - 54967210
Alignment:
| Q |
1 |
gagcaagagagaaagagagtcttgctcaagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttcctta |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54967546 |
gagcaagagagaaagagaaccttgctcaagagaaaagtcatcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttcctta |
54967447 |
T |
|
| Q |
101 |
caaattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaag-ttttaagaggcccaagggttccg |
199 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
54967446 |
caaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccg |
54967347 |
T |
|
| Q |
200 |
tggnnnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttga |
299 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
54967346 |
tgg--tttttccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgcttttatttcacgtttccgctagtgcctattttga |
54967249 |
T |
|
| Q |
300 |
gttcacggaaaagggaaattgtgcaggcatttcccaaca |
338 |
Q |
| |
|
||| ||||| ||||||||| |||||||||||||||||| |
|
|
| T |
54967248 |
gttgacggaggagggaaattatgcaggcatttcccaaca |
54967210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 8 - 338
Target Start/End: Complemental strand, 44782853 - 44782524
Alignment:
| Q |
8 |
agagaaagagagtcttgctcaagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttccttacaaattg |
107 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44782853 |
agagaaagagagccttgctcaagagaaaagtcatcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttgcaaattg |
44782754 |
T |
|
| Q |
108 |
agaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtggnnnnn |
207 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
44782753 |
agagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgg-tttt |
44782655 |
T |
|
| Q |
208 |
nnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttgagttcacgg |
307 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44782654 |
ttccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgtttatatttcacgtttccgctagtgtctattttgagttcacgg |
44782555 |
T |
|
| Q |
308 |
aaaagggaaattgtgcaggcatttcccaaca |
338 |
Q |
| |
|
| ||||||||| |||||||||||||||||| |
|
|
| T |
44782554 |
aggagggaaattatgcaggcatttcccaaca |
44782524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 54980178 - 54979854
Alignment:
| Q |
1 |
gagcaagagagaaagagagtcttgctcaagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttcctta |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54980178 |
gagcaagagagaaagagaaccttgctcaagagaaaagtcatcctcatagagagttttcttgtgagagaaatagcgagccaatttgtgagagtgttcctta |
54980079 |
T |
|
| Q |
101 |
caaattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaag-ttttaagaggcccaagggttccg |
199 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
54980078 |
caaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccg |
54979979 |
T |
|
| Q |
200 |
tggnnnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttga |
299 |
Q |
| |
|
||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
54979978 |
tgg--tttttccctttctcatattgagaaggttttccatgctaaaattctctttgtgtcattacacttttatttcacgtttccgctagtgcttattttga |
54979881 |
T |
|
| Q |
300 |
gttcacggaaaagggaaattgtgcagg |
326 |
Q |
| |
|
||| ||||| ||||||||| |||||| |
|
|
| T |
54979880 |
gttgacggaggagggaaattatgcagg |
54979854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 2 - 304
Target Start/End: Original strand, 39298666 - 39298966
Alignment:
| Q |
2 |
agcaagagagaaagagagtcttgctcaa--gagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttcctt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39298666 |
agcaagagagaaagagagtcttgctcaaatgagaaaagtgatcctcatggagagttcctttgtgagagaaatagtgagccaatttgtgagagtgt-cctt |
39298764 |
T |
|
| Q |
100 |
acaaattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccg |
199 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||| ||||||| ||| |
|
|
| T |
39298765 |
acaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattatagtggaag-tttaagaggcacaagggtcccg |
39298863 |
T |
|
| Q |
200 |
tggnnnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgc-ctattttg |
298 |
Q |
| |
|
|| |||| |||||||||||||||||| ||| |||||||| |||| |||||||||| ||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
39298864 |
tg---atttttccttcatcacattgagaaggtttttcacactaaaattatcttcgtgtcattacacttatatttcacgtttctgctaatgcgctatttta |
39298960 |
T |
|
| Q |
299 |
agttca |
304 |
Q |
| |
|
|||||| |
|
|
| T |
39298961 |
agttca |
39298966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 116 - 338
Target Start/End: Complemental strand, 18556523 - 18556305
Alignment:
| Q |
116 |
attgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtggnnnnnnncccttt |
215 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | ||||| |||||| || ||| |
|
|
| T |
18556523 |
attgtaatgagatccacctaagggtgaagttgttgtattctcattgtcattatagtggaagttt-aagaggctcgagggtcccgtggttttttgcc-ttt |
18556426 |
T |
|
| Q |
216 |
ctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttgagttcacggaaaaggga |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| ||| || ||||||||||||||| ||| ||| | |
|
|
| T |
18556425 |
ctcagattgagaaggttttccacgctaaaattttat--gtgtcattacgcttatatttcacgtttctgctggtacctattttgagttcatggaggaggca |
18556328 |
T |
|
| Q |
316 |
aattgtgcaggcatttcccaaca |
338 |
Q |
| |
|
|||| || ||| |||||||||| |
|
|
| T |
18556327 |
aattatgtaggtgtttcccaaca |
18556305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 28 - 340
Target Start/End: Original strand, 17645685 - 17645983
Alignment:
| Q |
28 |
aagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagaaatatattgtagtgaga |
127 |
Q |
| |
|
||||| ||||| || |||||| ||||||| |||| |||| ||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
17645685 |
aagaggaaagtgattctcataaagagtttccttgtgagataaatagtgagccaatttgtaagagtgttccttacaaattgagagatacgttgtagtgaga |
17645784 |
T |
|
| Q |
128 |
tccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtggnnnnnnnccctttctcacattgaga |
227 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||||||||||||| ||||||| || |||| || |||||| ||| | | ||||||| |
|
|
| T |
17645785 |
tccacctaggg-----gttgttgtattgtcattatcattatagtggaag-tttaagacgctcaagagtcccgtggttttt-----ttttttatattgaga |
17645873 |
T |
|
| Q |
228 |
aggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttgagttcacggaaaagggaaattgtgcagg- |
326 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| |||||| || | ||| | |||||| |||||||||||||||||| ||||||||| || ||| |
|
|
| T |
17645874 |
aggttttccacgctaaaat----tttgtgtgattacacttataatttatgttcctactagtgtctattttgagttcacggatgagggaaattatggaggt |
17645969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 50603225 - 50603320
Alignment:
| Q |
148 |
ttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtggnnnnnnnccctttctcacattgagaaggttttccacgctaaaatt |
247 |
Q |
| |
|
|||||||| |||||| ||||||||||| | ||||||||||| | ||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
50603225 |
ttgtattcccattattattatagtgga-gatttaagaggcctacgggttccgtggtttttt---cttactcacattgagaaggttttccacgctaaaatt |
50603320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 50603351 - 50603404
Alignment:
| Q |
286 |
agtgcctattttgagttcacggaaaagggaaattgtgcaggcatttcccaacaa |
339 |
Q |
| |
|
|||| |||||||||||||||||| || |||||||| | ||||||||||||||| |
|
|
| T |
50603351 |
agtgtctattttgagttcacggaggagagaaattgtactggcatttcccaacaa |
50603404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 2601 - 2936
Alignment:
| Q |
1 |
gagcaagagagaaagagagtcttgctcaagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttcctta |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2601 |
gagcaagagaaaaagagagccttgctcatgagaaa-gtcatcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagcgttcctta |
2699 |
T |
|
| Q |
101 |
caaattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgt |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2700 |
caaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgt |
2799 |
T |
|
| Q |
201 |
ggnnnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttgag |
300 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2800 |
gg-ttttttccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgtctattttgag |
2898 |
T |
|
| Q |
301 |
ttcacggaaaagggaaattgtgcaggcatttcccaaca |
338 |
Q |
| |
|
|||||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
2899 |
ttcacggagaagggaaattatgcatgcatttcccaaca |
2936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 4842984 - 4842648
Alignment:
| Q |
1 |
gagcaagagagaaagagagtcttgctcaagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttcctta |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4842984 |
gagcaagagagaaagagagccttgctcaagagaaaagtcatcctcataaagagttttcttgtgagagaaatattgagccaatttgtgagagtgttcctta |
4842885 |
T |
|
| Q |
101 |
caaattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgt |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
4842884 |
aaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgt |
4842785 |
T |
|
| Q |
201 |
ggnnnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttgag |
300 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4842784 |
gg-ttttttccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacacttatatttcacgtttccgctagtgcctattttgag |
4842686 |
T |
|
| Q |
301 |
ttcacggaaaagggaaattgtgcaggcatttcccaaca |
338 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
4842685 |
ttcacggaggagggaaattatgcaggcatttcccaaca |
4842648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 4835909 - 4835575
Alignment:
| Q |
1 |
gagcaagagagaaagagagtcttgctcaagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttcctta |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4835909 |
gagcaagagagaaagagagccttgctcaagagaaaagtcatcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttcctta |
4835810 |
T |
|
| Q |
101 |
caaattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4835809 |
caaattgagagatatattgtagtgagatccacctaagggtgaagttgttgcattcccattatcattatagtggaagttttaagaggcccaagggtcccgt |
4835710 |
T |
|
| Q |
201 |
ggnnnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttgag |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4835709 |
gg-ttttttccctttctcacattgagaaggttttccacgctaaaattctc--tgtgtcattacgtttatatttcacgtttccactagtgcctattttgag |
4835613 |
T |
|
| Q |
301 |
ttcacggaaaagggaaattgtgcaggcatttcccaaca |
338 |
Q |
| |
|
|||| ||| ||||||||| |||||||||||||||||| |
|
|
| T |
4835612 |
ttcatggaggagggaaattatgcaggcatttcccaaca |
4835575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 25857464 - 25857131
Alignment:
| Q |
1 |
gagcaagagagaaagagagtcttgctcaagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttcctta |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25857464 |
gagcaagagagaaagagagccttgctcaagagaaaagtcatcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttcctta |
25857365 |
T |
|
| Q |
101 |
caaattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgt |
200 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25857364 |
caaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgt |
25857265 |
T |
|
| Q |
201 |
ggnnnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttgag |
300 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
25857264 |
gg--tttttccttttctcacattgagaaggttttccacgctaaaattctc--tgtgtcattacgcttatatttcacgtttccgctagtgcctattttaag |
25857169 |
T |
|
| Q |
301 |
ttcacggaaaagggaaattgtgcaggcatttcccaaca |
338 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
25857168 |
ttcacggaggagggaaattatgcaggcatttcccaaca |
25857131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 338
Target Start/End: Complemental strand, 24379607 - 24379279
Alignment:
| Q |
8 |
agagaaagagagtcttgctcaagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttccttacaaattg |
107 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24379607 |
agagaaagagagtcttgctcgagagaaaagtcatcctcatagagagttttcttgtgaaagaaatagtgagccaatttatgagagtgttccttacaaattg |
24379508 |
T |
|
| Q |
108 |
agaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtggnnnnn |
207 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | |||||| |
|
|
| T |
24379507 |
agagatatattgtagggagatccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtgg--ttt |
24379410 |
T |
|
| Q |
208 |
nnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttgagttcacgg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||| | |||||||||| |||||||| |||||||| |||||||||||||| ||||||||| |
|
|
| T |
24379409 |
ttccctttctcacattgagaaggttttccacgttaaaattatctctatgtcattacgtttatattttacgtttccactagtgcctattttaagttcacgg |
24379310 |
T |
|
| Q |
308 |
aaaagggaaattgtgcaggcatttcccaaca |
338 |
Q |
| |
|
| || |||||| || || ||||| |||||| |
|
|
| T |
24379309 |
aggagagaaattatgtagacattttccaaca |
24379279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 2 - 319
Target Start/End: Complemental strand, 27341266 - 27340955
Alignment:
| Q |
2 |
agcaagagagaaagagagtcttgctcaa--gagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttcctt |
99 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| ||||||||| ||||||| ||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27341266 |
agcaagagagaaagagagtcatgctcaaaagagaaaagttatcctcatatagagtttctttgtgagagaaatagtgagccaacctgtgagagtgttcctt |
27341167 |
T |
|
| Q |
100 |
acaaattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccg |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| | |||||| ||||||| |||||||||| |||| |||| ||||||||| ||||||| ||| |
|
|
| T |
27341166 |
acaaattgagagatatattgtagtgagatccatctaa--gagaagttattgtatttccattatcattgtagtagaag-tttaagaggtacaagggtcccg |
27341070 |
T |
|
| Q |
200 |
tggnnnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttga |
299 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27341069 |
tggttttt---cctttcttacattgagaaggttttccacgctaaaattctc--tgtgtcattacgcttatatttcatgtttccgctagtgcctattttga |
27340975 |
T |
|
| Q |
300 |
gttcacggaaaagggaaatt |
319 |
Q |
| |
|
|||||| || ||||||||| |
|
|
| T |
27340974 |
gttcacaaaagagggaaatt |
27340955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 27 - 273
Target Start/End: Complemental strand, 13465264 - 13465024
Alignment:
| Q |
27 |
caagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagaaatatattgtagtgag |
126 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||| |||| |||||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
13465264 |
caagagaaaagtgatcctcatagaatgttttcttgtgaga--aatagtgaaccaatttgtaagagtgttccttacaaattgagagatacattgtagtgag |
13465167 |
T |
|
| Q |
127 |
atccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtggnnnnnnnccctttctcacattgag |
226 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||| | |||| ||||||||||||||||| |
|
|
| T |
13465166 |
atccacctgagggtgaacttgttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtgg--tttttccctttctcacattgag |
13465069 |
T |
|
| Q |
227 |
aaggttttccacgctaaaattctctttgtgtcattacgcttatattt |
273 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||| ||||||| |
|
|
| T |
13465068 |
aaggttttccacgctaaaat--tttttgtgtcattacgcatatattt |
13465024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 2 - 202
Target Start/End: Original strand, 4603542 - 4603740
Alignment:
| Q |
2 |
agcaagagagaaagagagtcttgctcaagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttccttac |
101 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
4603542 |
agcaagatagaaagagagtcttgctcaagagaaaagttatcttcataaagagttttcttgtgagagaaatagagagccaatttgtaag--tgttccttac |
4603639 |
T |
|
| Q |
102 |
aaattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtg |
201 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
4603640 |
aaattgaaagatatattgtagtgagatccacctaagggtaaagttgttgtatttccattatcattatagtggaaggtttaagaggcccaaaggtcccgtg |
4603739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 28 - 341
Target Start/End: Original strand, 17845741 - 17846054
Alignment:
| Q |
28 |
aagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttg----tgagagtgttccttacaaattgagaaatatattgtagt |
123 |
Q |
| |
|
||||||||||| ||||| ||| ||||||| |||| |||||||||| |||| |||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17845741 |
aagagaaaagtgatcctaataaagagtttccttgtgagagaaatattgagtcaatttaattatgagagtgttccttacaaattgagagatatattgtagt |
17845840 |
T |
|
| Q |
124 |
gagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtggnnnnnnnccctttctcacatt |
223 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| ||| | |||| |||| |||||||| |
|
|
| T |
17845841 |
gagattcacctaagggtgaagttgttgtatttccattatcattatagtggaag-tttaagaggtccaaaggtcctgtggttttt---ccttcctcacatt |
17845936 |
T |
|
| Q |
224 |
gagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttgagttcacggaaaagggaaattgt-g |
322 |
Q |
| |
|
| ||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||| ||| |||| ||||| |||||||||| ||| ||||| | | |
|
|
| T |
17845937 |
gggaaggttttccactctaaaattctc-ttgtgtctttacgcttatatttcacatttctcctaatgccaattttaagttcacggaggaggaaaattatgg |
17846035 |
T |
|
| Q |
323 |
caggcatttcccaacaata |
341 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
17846036 |
aagtcatttcccaacaata |
17846054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 4 - 339
Target Start/End: Complemental strand, 38994372 - 38994059
Alignment:
| Q |
4 |
caagagagaaagagagtcttgctcaagagaaaagtcatcctcatagagagttttc-ttgcgagagaaatagtgagccaatttgtgagagtgttccttaca |
102 |
Q |
| |
|
|||||||||||| |||| |||||||| |||||||| ||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
38994372 |
caagagagaaagggagttttgctcaaaagaaaagtaatcctcatagagagttttccttgtgagagaaataatgagccaatttgtgatagtgttccttaca |
38994273 |
T |
|
| Q |
103 |
aattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtgg |
202 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||| || |||||||||||||| | ||||| |||||| |
|
|
| T |
38994272 |
aattgagagatatattgtagtgagatccacctaagg---------------------tatcattataatgaaagttttaagaggctcgagggtcccgtgg |
38994194 |
T |
|
| Q |
203 |
nnnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttgagtt |
302 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||| |||| |
|
|
| T |
38994193 |
--tttttccctttctcgcattgagaaggttttccacgttaaaattctctttgtgtcattacatttatatttcatgtttccgtcggtgtctattttaagtt |
38994096 |
T |
|
| Q |
303 |
cacggaaaagggaaattgtgcaggcatttcccaacaa |
339 |
Q |
| |
|
|| ||| | |||||| |||| | |||||||||||| |
|
|
| T |
38994095 |
catggatgatagaaattatgcatgtatttcccaacaa |
38994059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 24380113 - 24380164
Alignment:
| Q |
288 |
tgcctattttgagttcacggaaaagggaaattgtgcaggcatttcccaacaa |
339 |
Q |
| |
|
|||||||||||||||||| || ||||||||| ||||||||||||||||||| |
|
|
| T |
24380113 |
tgcctattttgagttcacagaggagggaaattatgcaggcatttcccaacaa |
24380164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 4603766 - 4603811
Alignment:
| Q |
253 |
tgtgtcattacgcttatatttcacgtttccgctagtgcctattttg |
298 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||| |||||||| |
|
|
| T |
4603766 |
tgtgtcattgcgcttatattctacgtttccgctagtgtctattttg |
4603811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 9757549 - 9757212
Alignment:
| Q |
1 |
gagcaagagagaaagagagtcttgctcaagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttcctta |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9757549 |
gagcaagagagaaagagagccttgctcaagagagaagtcatcttcatagagagttttcttttgagagaaatagtgagccaatttgtgagagtgttcctta |
9757450 |
T |
|
| Q |
101 |
caaattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaag--ttttaagaggcccaagggttcc |
198 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
9757449 |
caaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttttaagaggcccaagggtccc |
9757350 |
T |
|
| Q |
199 |
gtggnnnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttg |
298 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9757349 |
gtgg--tttttccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttg |
9757252 |
T |
|
| Q |
299 |
agttcacggaaaagggaaattgtgcaggcatttcccaaca |
338 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||| |||||| |
|
|
| T |
9757251 |
agttcacggaggaaggaaattatgcaggcatttaccaaca |
9757212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 307
Target Start/End: Complemental strand, 42683166 - 42682868
Alignment:
| Q |
2 |
agcaagagagaaagagagtcttgctcaagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttccttac |
101 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||| | |||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42683166 |
agcaagagagagagagagtcttgctcaagagaaaactcatcctcacaaagagttttcttgtgagagaaatagtgagccaatttgtaagagtgttccttac |
42683067 |
T |
|
| Q |
102 |
aaattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtg |
201 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
42683066 |
aaattgagagatatattgtagtgagatgcacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtg |
42682967 |
T |
|
| Q |
202 |
gnnnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttgagt |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| | |||||||||||| |||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
42682966 |
---atttttcctttctcacattgagaaggttttccacgctgaaat----tatgtgtcattacgtttatattttacgttttcgctagtgtctattttgagt |
42682874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 2 - 308
Target Start/End: Complemental strand, 37287218 - 37286913
Alignment:
| Q |
2 |
agcaagagagaaagagagtcttgctcaagaga--aaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttcctt |
99 |
Q |
| |
|
||||||||||||||| |||||||||||| | | ||| | || ||||||||| ||| ||| |||||||| |||||||| ||||||| | |||||||| |
|
|
| T |
37287218 |
agcaagagagaaagaaagtcttgctcaaaacataaaattgatgttcatagagaatttccttctgagagaaacagtgagccgatttgtgttaatgttcctt |
37287119 |
T |
|
| Q |
100 |
acaaattgagaaatatattgtagtgagatccacctaagggtg-aagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttcc |
198 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||||||||||| ||||||| || |||||| || |
|
|
| T |
37287118 |
acaaattgagagatatattgtagtgagctccatctaagggtgaaagttgttgtattcttattattattatagtggaag-tttaagatgcttaagggtccc |
37287020 |
T |
|
| Q |
199 |
gtggnnnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttg |
298 |
Q |
| |
|
||| ||||| ||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
37287019 |
gtg---atttttcctttttcacattgagaaggttttccatgctaaaattttctttctgtcattacgtttatatttcacgtttccgctagtgtttattttg |
37286923 |
T |
|
| Q |
299 |
agttcacgga |
308 |
Q |
| |
|
|| ||||||| |
|
|
| T |
37286922 |
agctcacgga |
37286913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 342551 - 342217
Alignment:
| Q |
1 |
gagcaagagagaaagagagtcttgctcaagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttcctta |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
342551 |
gagcaagagagaaagagagccttgctcaagagaaaagtcatcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttcctta |
342452 |
T |
|
| Q |
101 |
caaattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgt |
200 |
Q |
| |
|
|||||||||| |||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
342451 |
caaattgagagatatattgtagtcagatacacctaagggtgaaattgttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgt |
342352 |
T |
|
| Q |
201 |
ggnnnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttgag |
300 |
Q |
| |
|
|| || ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
342351 |
gg-tttcttccatttctcatattgagaaggtttttcacgctaaaat--tctttgtgtcattacgcttatatttcacgtttctgctagtgcctattttgag |
342255 |
T |
|
| Q |
301 |
ttcacggaaaagggaaattgtgcaggcatttcccaaca |
338 |
Q |
| |
|
|||||||| ||| ||||| ||||||||||| |||||| |
|
|
| T |
342254 |
ttcacggaggaggaaaattatgcaggcattttccaaca |
342217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 2 - 308
Target Start/End: Original strand, 37037796 - 37038096
Alignment:
| Q |
2 |
agcaagagagaaagagagtcttgctcaagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttccttac |
101 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37037796 |
agcaagagagaaagagagccttgctcaagagaaaagtgatcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgtttcttat |
37037895 |
T |
|
| Q |
102 |
aaattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtg |
201 |
Q |
| |
|
||||||||| | |||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||| ||||| |
|
|
| T |
37037896 |
aaattgagagtcagattgtaatgagatccacctaagagtgaagttgttgtattctcattatcgttatagtgaaag-tttaagaggcccaagggtcccgtg |
37037994 |
T |
|
| Q |
202 |
gnnnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttgagt |
301 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||| ||| |||||| |||||| | |||||| |||| |||||||||||||||||||| |
|
|
| T |
37037995 |
gtttct---cctttctcacattgagaaggttttcctcgctaaaa--atctatgtgtctttacgcaaagatttcaggttttcgctagtgcctattttgagt |
37038089 |
T |
|
| Q |
302 |
tcacgga |
308 |
Q |
| |
|
||||||| |
|
|
| T |
37038090 |
tcacgga |
37038096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 118 - 339
Target Start/End: Original strand, 22981494 - 22981711
Alignment:
| Q |
118 |
tgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtggnnnnnnnccctttct |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
22981494 |
tgtagtgaaatccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttt--ccctttct |
22981591 |
T |
|
| Q |
218 |
cacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttgagttcacggaaaagggaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
22981592 |
cacattgagaaggttttccacgctaaaattctct--gtgtcattacgcttatttttcacgtttccgctagtgcctgttttgagttcacggaggggggaaa |
22981689 |
T |
|
| Q |
318 |
ttgtgcaggcatttcccaacaa |
339 |
Q |
| |
|
|| ||||| ||||||||||||| |
|
|
| T |
22981690 |
ttatgcagtcatttcccaacaa |
22981711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 118 - 339
Target Start/End: Complemental strand, 23806914 - 23806697
Alignment:
| Q |
118 |
tgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtggnnnnnnnccctttct |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
23806914 |
tgtagtgaaatccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttt--ccctttct |
23806817 |
T |
|
| Q |
218 |
cacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctattttgagttcacggaaaagggaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
23806816 |
cacattgagaaggttttccacgctaaaattctct--gtgtcattacgcttatttttcacgtttccgctagtgcctgttttgagttcacggaggggggaaa |
23806719 |
T |
|
| Q |
318 |
ttgtgcaggcatttcccaacaa |
339 |
Q |
| |
|
|| ||||| ||||||||||||| |
|
|
| T |
23806718 |
ttatgcagtcatttcccaacaa |
23806697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 341
Target Start/End: Complemental strand, 31151978 - 31151923
Alignment:
| Q |
286 |
agtgcctattttgagttcacggaaaagggaaattgtgcaggcatttcccaacaata |
341 |
Q |
| |
|
||||||||||||||||||| || ||||||||| ||||||||||||||||||||| |
|
|
| T |
31151978 |
agtgcctattttgagttcagagaggagggaaattatgcaggcatttcccaacaata |
31151923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 6e-65; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 2 - 249
Target Start/End: Original strand, 16698361 - 16698603
Alignment:
| Q |
2 |
agcaagagagaaagagagtcttgctcaagagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttccttac |
101 |
Q |
| |
|
|||||||||| |||| || |||||||||||||||||| |||||||||||||||||||||| | ||||||||| || |||||| ||||||||||| ||||| |
|
|
| T |
16698361 |
agcaagagaggaagatagccttgctcaagagaaaagtgatcctcatagagagttttcttgtgggagaaatagggacccaattcgtgagagtgtttcttac |
16698460 |
T |
|
| Q |
102 |
aaattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtg |
201 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||| || | |
|
|
| T |
16698461 |
aaattgagagatacattgtagtgagatccacataagggtgaa---gttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccat- |
16698556 |
T |
|
| Q |
202 |
gnnnnnnnccctttctcacattgagaaggttttccacgctaaaattct |
249 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
16698557 |
-aatttttccctttctcacattgagaaggatttccacactaaaattct |
16698603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 22764029 - 22763855
Alignment:
| Q |
121 |
agtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtggnnnnnnnccctttctcac |
220 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| ||| |||||| |||||||||| |
|
|
| T |
22764029 |
agtgagattcacctaagagtgaagttgttgtattcccattatcattatagcataagttttaagaggcccaatggtcccgtggttttt--ccctttctcat |
22763932 |
T |
|
| Q |
221 |
attgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctatttt |
297 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22763931 |
attgagaaggttttccatgctaaaattctctttgtatcattacgcttatatttcacgtttctgctagtgcctatttt |
22763855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 338
Target Start/End: Original strand, 33807965 - 33808213
Alignment:
| Q |
70 |
atagtgagccaatttgtgagagtgttccttacaaattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattata |
169 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | |||||||| |||||| |||||| |
|
|
| T |
33807965 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
33808058 |
T |
|
| Q |
170 |
gtggaagttttaagaggcccaagggttccgtggnnnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttat |
269 |
Q |
| |
|
||||| | ||||||||||| | |||| |||||| |||| |||||||||||||||||||||||||||||||| | || |||||||| |
|
|
| T |
33808059 |
gtgga-gatttaagaggcctacgggtcccgtggttttt---ccttactcacattgagaaggttttccacgctaaaattttgtt-gtgtcatt-------- |
33808145 |
T |
|
| Q |
270 |
atttcacgtttccgcta--gtgcctattttgagttcacggaaaagggaaattgtgcaggcatttcccaaca |
338 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
33808146 |
---ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
33808213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 338
Target Start/End: Original strand, 33811619 - 33811867
Alignment:
| Q |
70 |
atagtgagccaatttgtgagagtgttccttacaaattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattata |
169 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | |||||||| |||||| |||||| |
|
|
| T |
33811619 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
33811712 |
T |
|
| Q |
170 |
gtggaagttttaagaggcccaagggttccgtggnnnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttat |
269 |
Q |
| |
|
||||| | ||||||||||| | |||| |||||| |||| |||||||||||||||||||||||||||||||| | || |||||||| |
|
|
| T |
33811713 |
gtgga-gatttaagaggcctacgggtcccgtggttttt---ccttactcacattgagaaggttttccacgctaaaattttgtt-gtgtcatt-------- |
33811799 |
T |
|
| Q |
270 |
atttcacgtttccgcta--gtgcctattttgagttcacggaaaagggaaattgtgcaggcatttcccaaca |
338 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
33811800 |
---ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
33811867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 338
Target Start/End: Original strand, 33816537 - 33816785
Alignment:
| Q |
70 |
atagtgagccaatttgtgagagtgttccttacaaattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattata |
169 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | |||||||| |||||| |||||| |
|
|
| T |
33816537 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
33816630 |
T |
|
| Q |
170 |
gtggaagttttaagaggcccaagggttccgtggnnnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttat |
269 |
Q |
| |
|
||||| | ||||||||||| | |||| |||||| |||| |||||||||||||||||||||||||||||||| | || |||||||| |
|
|
| T |
33816631 |
gtgga-gatttaagaggcctacgggtcccgtggttttt---ccttactcacattgagaaggttttccacgctaaaattttgtt-gtgtcatt-------- |
33816717 |
T |
|
| Q |
270 |
atttcacgtttccgcta--gtgcctattttgagttcacggaaaagggaaattgtgcaggcatttcccaaca |
338 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
33816718 |
---ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
33816785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 16698609 - 16698674
Alignment:
| Q |
277 |
gtttccgctagtgcctattttgagttcacggaaaagggaaattgtgcaggcatttcccaacaatat |
342 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | ||||||| |||| ||||||||||||||| |
|
|
| T |
16698609 |
gtttccgctagtgcctattctgagttcacggaggatggaaattatgcatatatttcccaacaatat |
16698674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 285
Target Start/End: Original strand, 27641981 - 27642261
Alignment:
| Q |
2 |
agcaagagagaaagagagtcttgctcaa--gagaaaagtcatcctcatagagagttttcttgcgagagaaatagtgagccaatttgtgagagtgttcctt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||| || | ||||| ||| ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
27641981 |
agcaagagagaaagagagtcttgctcaaaagagaaaagtgatcctcgtaaaaagtttccttttgagagaaataggaagtcaatttgtgagagtgttcctt |
27642080 |
T |
|
| Q |
100 |
acaaattgagaaatatattgtagtgagatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccg |
199 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| ||| | |||||||||| ||||| |||||| ||||||||||||| |||||||| ||| ||| ||| |
|
|
| T |
27642081 |
acaaatagagagatatattgtagtgagatccacttaaagatgaagttgttttattcccattattattatagtggaag-tttaagagacccgaggaccccg |
27642179 |
T |
|
| Q |
200 |
tggnnnnnnnccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgct |
285 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||| ||||| || |||| ||||||||||||||||||||||||||||| |
|
|
| T |
27642180 |
tg--attttttcctttctcacattgagaaggttttacacgccaaaat--tccttgtatcattacgcttatatttcacgtttccgct |
27642261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 28 - 247
Target Start/End: Complemental strand, 26795 - 26579
Alignment:
| Q |
28 |
aagagaaaagtcatcctcatag--agagttttcttgcgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagaaatatattgtagtga |
125 |
Q |
| |
|
|||| |||||| |||| ||||| |||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
26795 |
aagataaaagtgatccgcatagctagagtttttttgtgaga-aaatagtgagccaatttgtgagagtgttccttacaaattgagagataaattgtagtga |
26697 |
T |
|
| Q |
126 |
gatccacctaagggtgaagttgttgtattctcattatcattatagtggaagttttaagaggcccaagggttccgtggnnnnnnnccctttctcacattga |
225 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| ||||||||| |||||||| |||||||||||||||||| |||| | |||| |||||||||| |
|
|
| T |
26696 |
gatccacctaagggtggagtagttgtattctcgttatcattagagtggaag-tttaagaggcccaagggtcccgtagttttt---ccttactcacattga |
26601 |
T |
|
| Q |
226 |
gaaggttttccacgctaaaatt |
247 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
26600 |
aaaggttttccaccctaaaatt |
26579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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