View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20943_high_1 (Length: 774)

Name: NF20943_high_1
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20943_high_1
NF20943_high_1
[»] chr2 (16 HSPs)
chr2 (208-518)||(28215611-28215921)
chr2 (211-435)||(32565382-32565609)
chr2 (211-435)||(32806567-32806794)
chr2 (211-435)||(32815004-32815231)
chr2 (211-435)||(32309226-32309453)
chr2 (208-374)||(28220447-28220610)
chr2 (353-485)||(28220224-28220356)
chr2 (241-435)||(32799643-32799840)
chr2 (8-89)||(28215454-28215532)
chr2 (8-86)||(28220694-28220769)
chr2 (449-518)||(32309098-32309167)
chr2 (449-518)||(32565668-32565737)
chr2 (449-518)||(32799899-32799968)
chr2 (449-518)||(32806853-32806922)
chr2 (449-518)||(32815290-32815359)
chr2 (211-252)||(32305344-32305385)
[»] chr4 (1 HSPs)
chr4 (513-739)||(34466029-34466252)
[»] chr6 (2 HSPs)
chr6 (214-450)||(301362-301596)
chr6 (449-518)||(301252-301321)


Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 208 - 518
Target Start/End: Original strand, 28215611 - 28215921
Alignment:
Q  208 ggaacctggatgaagcaatcatgaaagaagaggcgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatat 307  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28215611 ggaacctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaacagcggaacgaacaatat 28215710  T
Q  308 tctcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaataccagctaactt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215711 tctcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaataccagctaactt 28215810  T
Q  408 gactgaacgaaaagaagtatgatagaaattaaatgaagttgttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttg 507  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215811 cactgaacgaaaagaagtatgatagaaattaaatgaagttgttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttg 28215910  T
Q  508 aagatggagaa 518  Q
    |||||| ||||    
T  28215911 aagatgaagaa 28215921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 211 - 435
Target Start/End: Original strand, 32565382 - 32565609
Alignment:
Q  211 acctggatgaagcaatcatgaaagaagaggcgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattct 310  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  |    
T  32565382 acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatctt 32565481  T
Q  311 cagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaactt 407  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  |    
T  32565482 cagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat 32565581  T
Q  408 gactgaacgaaaagaagtatgatagaaa 435  Q
    |||||||||||||||||||||| |||||    
T  32565582 gactgaacgaaaagaagtatgagagaaa 32565609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 211 - 435
Target Start/End: Original strand, 32806567 - 32806794
Alignment:
Q  211 acctggatgaagcaatcatgaaagaagaggcgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattct 310  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  |    
T  32806567 acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatctt 32806666  T
Q  311 cagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaactt 407  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  |    
T  32806667 cagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat 32806766  T
Q  408 gactgaacgaaaagaagtatgatagaaa 435  Q
    |||||||||||||||||||||| |||||    
T  32806767 gactgaacgaaaagaagtatgagagaaa 32806794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 211 - 435
Target Start/End: Original strand, 32815004 - 32815231
Alignment:
Q  211 acctggatgaagcaatcatgaaagaagaggcgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattct 310  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  |    
T  32815004 acctggatgaagcaatcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatctt 32815103  T
Q  311 cagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaactt 407  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  |    
T  32815104 cagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat 32815203  T
Q  408 gactgaacgaaaagaagtatgatagaaa 435  Q
    |||||||||||||||||||||| |||||    
T  32815204 gactgaacgaaaagaagtatgagagaaa 32815231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 211 - 435
Target Start/End: Complemental strand, 32309453 - 32309226
Alignment:
Q  211 acctggatgaagcaatcatgaaagaagaggcgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattct 310  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| |||  |    
T  32309453 acctggatgaagcaatcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacattatctt 32309354  T
Q  311 cagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaactt 407  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  |    
T  32309353 cagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat 32309254  T
Q  408 gactgaacgaaaagaagtatgatagaaa 435  Q
    |||||||||||||||||||||| |||||    
T  32309253 gactgaacgaaaagaagtatgagagaaa 32309226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 208 - 374
Target Start/End: Complemental strand, 28220610 - 28220447
Alignment:
Q  208 ggaacctggatgaagcaatcatgaaagaagaggcgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatat 307  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||||||| |||||||||||| | |||||||||||||||| ||||||||||||||||    
T  28220610 ggaacctggatgaagcaatcatgaaa--agagacgaagaagagaaggtgca-ggtctctatgattaaagtaaatatcggtaacagcggaacgaacaatat 28220514  T
Q  308 tctcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttc 374  Q
    ||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||    
T  28220513 tctcagcttgagggcaagaaaccttatagaaattatattgaagattggaaccatctctgattctttc 28220447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 353 - 485
Target Start/End: Complemental strand, 28220356 - 28220224
Alignment:
Q  353 tggaaccatctctgatactttcactgaaatcaaacggaaaaataccagctaacttgactgaacgaaaagaagtatgatagaaattaaatgaagttgttct 452  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28220356 tggaaccatctctgattctttgattgaaatcaaacggaaaaataccagctaacttcactgaacgaaaagaagtatgatagaaattaaatgaagttgttct 28220257  T
Q  453 gagagagagaagaacaggaaggactgcaatgaa 485  Q
    ||||||||||||||||| |||||||||||||||    
T  28220256 gagagagagaagaacagaaaggactgcaatgaa 28220224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 241 - 435
Target Start/End: Original strand, 32799643 - 32799840
Alignment:
Q  241 cgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattctcagcttcagggcaagaatccttatagaaat 340  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  ||||||| ||||||||||||| |||||||||    
T  32799643 cgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctatagaaat 32799742  T
Q  341 tatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaacttgactgaacgaaaagaagtatgatagaaa 435  Q
    ||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  ||||||||||||||||||||||| |||||    
T  32799743 tatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaaa 32799840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 28215454 - 28215532
Alignment:
Q  8 tagcaaagaagaccaacaagaaatagaacacaaaaaatttaggatatctattagtattcactactatttcataaccaatcaa 89  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||   ||||||||||||||||||||    
T  28215454 tagcaaagaaaaccaacaagaaatagaacacaaaaaatttaggatatttattggtattc---actatttcataaccaatcaa 28215532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 28220769 - 28220694
Alignment:
Q  8 tagcaaagaagaccaacaagaaatagaacacaaaaaatttaggatatctattagtattcactactatttcataaccaat 86  Q
    |||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  28220769 tagcaaagaaaaccaacaagaatcagaacacaaaaaatttaggatatctattagtattc---actatttcataaccaat 28220694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 449 - 518
Target Start/End: Complemental strand, 32309167 - 32309098
Alignment:
Q  449 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatggagaa 518  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||||| ||||    
T  32309167 ttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaa 32309098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 449 - 518
Target Start/End: Original strand, 32565668 - 32565737
Alignment:
Q  449 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatggagaa 518  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||||| ||||    
T  32565668 ttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaa 32565737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 449 - 518
Target Start/End: Original strand, 32799899 - 32799968
Alignment:
Q  449 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatggagaa 518  Q
    ||||||||||||||||||||||||||| | ||||||||||||||| || ||||| |||||||||| ||||    
T  32799899 ttctgagagagagaagaacaggaaggaatacaatgaatgcaactatgaaccatgggttgaagatgaagaa 32799968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 449 - 518
Target Start/End: Original strand, 32806853 - 32806922
Alignment:
Q  449 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatggagaa 518  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||| |||||||| |||||||||| ||||    
T  32806853 ttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaa 32806922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 449 - 518
Target Start/End: Original strand, 32815290 - 32815359
Alignment:
Q  449 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatggagaa 518  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||||| ||||    
T  32815290 ttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaa 32815359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 32305385 - 32305344
Alignment:
Q  211 acctggatgaagcaatcatgaaagaagaggcgaagaagagaa 252  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  32305385 acctggatgaagcaatcatgaaagaagagacgaagaagagaa 32305344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 513 - 739
Target Start/End: Complemental strand, 34466252 - 34466029
Alignment:
Q  513 ggagaacgtgagagagagtaggaaagagggtatgaagcagttcttgaagtaaagcttttactaccaaatttatcatagtgaaaaacgttgaaggaacgtg 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34466252 ggagaacgtgagagagagtaggaaagagggtatgaagcagttcttgaagtaaagcttttactaccaaatttatcatagtgaaaaacgttgaaggaacgtg 34466153  T
Q  613 agcttgtagcagcaacagcaactgtgacaaccggggaagaagaaggagaaagagaaggactgtgttgttgtttgttcccagaaggagaacctttcggtga 712  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34466152 agcttgtagcagcaacagcaactgtgacaaccggggaagaagaaggagaaagagaaggactgtgttgttgtttgttcccagaaggagaacctttcggtga 34466053  T
Q  713 ataaaactcttcttcatgtactctttc 739  Q
    ||||||||   ||||||||||||||||    
T  34466052 ataaaact---cttcatgtactctttc 34466029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 214 - 450
Target Start/End: Complemental strand, 301596 - 301362
Alignment:
Q  214 tggatgaagcaatcatgaaagaagaggcgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattctcag 313  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||| |||||||||  ||||    
T  301596 tggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaggtagatatcggtaacagcggaaggaacaatatcttcag 301497  T
Q  314 cttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaataccagctaacttgactga 413  Q
    ||| ||||| ||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||   |||||| |||||||    
T  301496 cttgagggctagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctaacgtgactga 301397  T
Q  414 acgaaaagaagtatgatagaaattaaatgaagttgtt 450  Q
    || |||||  |||||| |||||  | |||||||||||    
T  301396 accaaaag--gtatgagagaaagaagatgaagttgtt 301362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 449 - 518
Target Start/End: Complemental strand, 301321 - 301252
Alignment:
Q  449 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatggagaa 518  Q
    |||||| |||||||||||| ||||||||| ||||||||||||||| || ||||| |||||||||| ||||    
T  301321 ttctgaaagagagaagaacgggaaggactacaatgaatgcaactatgaaccatgggttgaagatgaagaa 301252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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