View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20943_high_12 (Length: 459)
Name: NF20943_high_12
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 3 - 449
Target Start/End: Complemental strand, 41704014 - 41703568
Alignment:
| Q |
3 |
agatgttaagtcaacaaatatactgttggacaatgaattcgacgcaaaagtttcggattttggactctctagattggctaacccgggacttagtcatgtg |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704014 |
agatgttaagtcaacaaatatactgttggacaatgaattcgacgcaaaagtttcggattttggactctctagattggctaacccgggacttagtcatgtg |
41703915 |
T |
|
| Q |
103 |
tctacctgtgctcagggaacactaggatacttggatcctgaatactatcgcaactaccaattaaccgataaaagtgatgtttatagctatggagttgtgt |
202 |
Q |
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| T |
41703914 |
tctacctgtgctcagggaacactaggatacttggatcctgaatactaccgcaactaccaattaaccgataaaagtgatgtttatagctatggagttgtgt |
41703815 |
T |
|
| Q |
203 |
tactagagctcttgacttcacagaaagcaatagacttttctcgtgatcaagatgatgtcaacttagtaattcatgtgactcaatatgcaagcaatggtgc |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41703814 |
tactagagctcttgacttcacagaaagcaatagacttttctcgtgatgaagatgatgtcaacttagtaattcatgtgagtcaatatgcaagcaatggtgc |
41703715 |
T |
|
| Q |
303 |
aatcatgcaagtggttgatcaaaggcttcttctatctgtggaacccttaagtagtaaattgatcacaagcatagaactcttttgggagcttgcacatgat |
402 |
Q |
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| T |
41703714 |
aatcatgcaagtggttgatcaaaggcttcttctatctgtggaacccttaagtagtaaattgatcacaagcatagaactcttttgggagcttgcacatgat |
41703615 |
T |
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| Q |
403 |
tgtcttagggagaagaaagttgaaaggcctagtatgagggattttgt |
449 |
Q |
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| T |
41703614 |
tgtcttagggagaagaaagttgaaaggcctagtatgagggatattgt |
41703568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 41814550 - 41814682
Alignment:
| Q |
130 |
tacttggatcctgaatactatcgcaactaccaattaaccgataaaagtgatgtttatagctatggagttgtgttactagagctcttgacttcacagaaag |
229 |
Q |
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||||||||||| || |||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||| | |||||| | ||||||| |||||||| |
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| T |
41814550 |
tacttggatcccaaaaactaccgcaactgccagttaaccgataaaagtgatgtttatagctatggagttgtgctgctagagtttttgacttgacagaaag |
41814649 |
T |
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| Q |
230 |
caatagacttttctcgtgatcaagatgatgtca |
262 |
Q |
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| T |
41814650 |
cagtagattcttctcatgatcatgatgatgtca |
41814682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 44888589 - 44888551
Alignment:
| Q |
171 |
taaaagtgatgtttatagctatggagttgtgttactaga |
209 |
Q |
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| T |
44888589 |
taaaagtgatgtttatagctatggagttgtcttgctaga |
44888551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 236
Target Start/End: Original strand, 30910749 - 30910876
Alignment:
| Q |
109 |
tgtgctcagggaacactaggatacttggatcctgaatactatcgcaactaccaattaaccgataaaagtgatgtttatagctatggagttgtgttactag |
208 |
Q |
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|||||||| || ||||| || ||| | ||||||||||| ||| | ||||||||||| |||||||| ||||| |||||||| | || |||||||| || | |
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| T |
30910749 |
tgtgctcaagggacacttgggtaccttgatcctgaatattatagaaactaccaattgaccgataagagtgacgtttatagtttcggggttgtgttgcttg |
30910848 |
T |
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| Q |
209 |
agctcttgacttcacagaaagcaataga |
236 |
Q |
| |
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|||| ||||| || ||||| || ||||| |
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| T |
30910849 |
agcttttgacgtctcagaaggcgataga |
30910876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 9118800 - 9118837
Alignment:
| Q |
160 |
caattaaccgataaaagtgatgtttatagctatggagt |
197 |
Q |
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||||||||||| ||||||||||||||||||| |||||| |
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| T |
9118800 |
caattaaccgagaaaagtgatgtttatagctttggagt |
9118837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 9170477 - 9170441
Alignment:
| Q |
161 |
aattaaccgataaaagtgatgtttatagctatggagt |
197 |
Q |
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|||||||||| ||||||||||||||||||| |||||| |
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| T |
9170477 |
aattaaccgaaaaaagtgatgtttatagctttggagt |
9170441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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