View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20943_high_13 (Length: 412)

Name: NF20943_high_13
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20943_high_13
NF20943_high_13
[»] chr6 (3 HSPs)
chr6 (75-267)||(28943087-28943283)
chr6 (18-69)||(2364597-2364648)
chr6 (18-69)||(22532010-22532061)
[»] chr2 (1 HSPs)
chr2 (18-69)||(17689490-17689541)
[»] chr3 (2 HSPs)
chr3 (18-69)||(29830947-29830998)
chr3 (21-69)||(11237301-11237349)
[»] chr1 (3 HSPs)
chr1 (18-69)||(49458222-49458273)
chr1 (25-64)||(34825080-34825119)
chr1 (211-255)||(33125885-33125929)
[»] chr5 (3 HSPs)
chr5 (202-263)||(34906142-34906203)
chr5 (211-267)||(35402038-35402095)
chr5 (18-64)||(475705-475751)
[»] chr4 (1 HSPs)
chr4 (18-69)||(6874676-6874727)
[»] chr8 (3 HSPs)
chr8 (18-64)||(3938708-3938754)
chr8 (18-72)||(40822320-40822374)
chr8 (211-255)||(30039419-30039463)
[»] chr7 (1 HSPs)
chr7 (212-267)||(27050530-27050587)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 75 - 267
Target Start/End: Original strand, 28943087 - 28943283
Alignment:
Q  75 aaagtttaacagtattaattcatcacaaaaataattaataatttatgattagtctc----tctcttctcacattccaaaaccatttgccgtcaccgactt 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| |||||    
T  28943087 aaagtttaacagtattaattcatcacaaaaataattaataatttatgattagtctctctctctcttctcacattccaaaaccatttgccgtcactgactt 28943186  T
Q  171 tcttcttcttgtctacaaaatagggatgataatttaggtgaattttgatccgaaatcactcatccaaattgtttttccttatttttagttaaataag 267  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  28943187 tcttcttcttgtctacaaaagagggatgataatttaggtgaattttgatccgaaatcacccatccgaattgtttttccttatttttagttaaataag 28943283  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 2364597 - 2364648
Alignment:
Q  18 aacaaaggcggtaaaacctcctaaatacaagatgtactaagaagtcatccct 69  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  2364597 aacaaaggcggtaaaacctcctaagtacaagatgtactaagaagtcacccct 2364648  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 22532010 - 22532061
Alignment:
Q  18 aacaaaggcggtaaaacctcctaaatacaagatgtactaagaagtcatccct 69  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| ||||    
T  22532010 aacaaaggcggtgaaacctcctaagtacaagatgtactaagaagtcacccct 22532061  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 17689490 - 17689541
Alignment:
Q  18 aacaaaggcggtaaaacctcctaaatacaagatgtactaagaagtcatccct 69  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  17689490 aacaaaggcggtaaaacctcctaagtacaagatgtactaagaagtcacccct 17689541  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 29830998 - 29830947
Alignment:
Q  18 aacaaaggcggtaaaacctcctaaatacaagatgtactaagaagtcatccct 69  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||| ||||    
T  29830998 aacaaaggcggtaaaaccttctaagtacaagatgtactaagaagtcacccct 29830947  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 11237301 - 11237349
Alignment:
Q  21 aaaggcggtaaaacctcctaaatacaagatgtactaagaagtcatccct 69  Q
    ||||||||| ||||||||||| ||||||||||| |||||||||| ||||    
T  11237301 aaaggcggtgaaacctcctaagtacaagatgtattaagaagtcacccct 11237349  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 49458222 - 49458273
Alignment:
Q  18 aacaaaggcggtaaaacctcctaaatacaagatgtactaagaagtcatccct 69  Q
    |||||||||||| || ||||||||||||||||||||||||||||||| ||||    
T  49458222 aacaaaggcggtgaagcctcctaaatacaagatgtactaagaagtcacccct 49458273  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 34825119 - 34825080
Alignment:
Q  25 gcggtaaaacctcctaaatacaagatgtactaagaagtca 64  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  34825119 gcggtgaagcctcctaaatacaagatgtactaagaagtca 34825080  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 33125929 - 33125885
Alignment:
Q  211 aattttgatccgaaatcactcatccaaattgtttttccttatttt 255  Q
    |||||||| || |||||||||||| ||||||||||||||| ||||    
T  33125929 aattttgacccaaaatcactcatctaaattgtttttccttctttt 33125885  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 34906142 - 34906203
Alignment:
Q  202 atttaggtgaattttgatccgaaatcactcatccaaattgtttttccttatttttagttaaa 263  Q
    |||||||| ||||||||||||||||||   |||| ||||||||||| |||||||||||||||    
T  34906142 atttaggtcaattttgatccgaaatcatctatccgaattgtttttcattatttttagttaaa 34906203  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 35402038 - 35402095
Alignment:
Q  211 aattttgatccgaaatcactcatccaaattgtttttccttatt-tttagttaaataag 267  Q
    |||||||| || ||||||||||||||| ||||||||| ||||| ||||||||||||||    
T  35402038 aattttgacccaaaatcactcatccaacttgtttttctttattgtttagttaaataag 35402095  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 475705 - 475751
Alignment:
Q  18 aacaaaggcggtaaaacctcctaaatacaagatgtactaagaagtca 64  Q
    |||||||  |||||||| |||||| ||||||||||||||||||||||    
T  475705 aacaaagatggtaaaacttcctaagtacaagatgtactaagaagtca 475751  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 6874727 - 6874676
Alignment:
Q  18 aacaaaggcggtaaaacctcctaaatacaagatgtactaagaagtcatccct 69  Q
    |||||||||||| ||||||||||| ||||||||||| |||||||||| ||||    
T  6874727 aacaaaggcggtgaaacctcctaagtacaagatgtattaagaagtcacccct 6874676  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 3938708 - 3938754
Alignment:
Q  18 aacaaaggcggtaaaacctcctaaatacaagatgtactaagaagtca 64  Q
    |||||||||||| || |||||||| ||||||||||||||||||||||    
T  3938708 aacaaaggcggtgaagcctcctaagtacaagatgtactaagaagtca 3938754  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 40822374 - 40822320
Alignment:
Q  18 aacaaaggcggtaaaacctcctaaatacaagatgtactaagaagtcatcccttaa 72  Q
    |||||||||||| ||||||||||| |||||||| || |||||||||| |||||||    
T  40822374 aacaaaggcggtgaaacctcctaagtacaagatatattaagaagtcaccccttaa 40822320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 30039463 - 30039419
Alignment:
Q  211 aattttgatccgaaatcactcatccaaattgtttttccttatttt 255  Q
    |||||||| || ||||||||||||| |||||||||||||| ||||    
T  30039463 aattttgacccaaaatcactcatccgaattgtttttccttctttt 30039419  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 27050587 - 27050530
Alignment:
Q  212 attttgatccgaaatcactcatccaaattgtttttcctt--atttttagttaaataag 267  Q
    |||||| ||| ||||||||||||| ||||||||||||||   ||||||||||||||||    
T  27050587 attttggtccaaaatcactcatccgaattgtttttcctttcttttttagttaaataag 27050530  T

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