View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20943_high_14 (Length: 391)
Name: NF20943_high_14
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 37521466 - 37521095
Alignment:
| Q |
1 |
atctaccattccttctgcttaaaaccatcgtcaacaactatgcgtgttcaaatttgcaacgtatgaccaaataatcataaaattaaaggttgcacaaaac |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37521466 |
atctaccattctttctgcttaaaaccatcgtcaacaactatgcgtgttcaaatttgcaacgtatgaccaaataatcataaaattaaaggttgcacaaaac |
37521367 |
T |
|
| Q |
101 |
taatattaagctaatctgcgtcaatttcaaaagttccgtaaattgaaaatcaaaactttgagaggcttaagagtccaaggacctcctgaaaaacatcctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
37521366 |
taatattaagctaatctgcgtcaatttcaaaagttccgtaaattgaaaatccaaactttgagaggcataagagtccaaggacctgctgaaaaacatcctc |
37521267 |
T |
|
| Q |
201 |
tgttacttcctcaatggaaaccattattttttggaatttcttagatgggttttgtattacagccatctgggtctttatttctgccatcaaaactagaact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37521266 |
tgttacttcctcaatggaaaccattattttttggaatttcttagatgggttttgtattatagccatctgggtctttatttctgccatcaaaactagaact |
37521167 |
T |
|
| Q |
301 |
tggtaatgtttgaagatgggtgtttcaaataggacttctttcatggatttctcttctagtgatggaggggct |
372 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37521166 |
tggtaaggtttgaagatgggtgtttcaaataggatttctttcatggatttctcttctagtgatggaggggct |
37521095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 2359702 - 2359333
Alignment:
| Q |
1 |
atctaccattccttctgcttaaaaccatcgtcaacaactatgcgtgttcaaatttgcaacgtatgaccaaataatcataaaattaaaggttgcacaaaac |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2359702 |
atctaccattctttctgcttaaaaccatcgtcaacaactatgcgtgttcaaatttgcaacgtatgaccaaataatcataaaattaaaggttgcacaaaac |
2359603 |
T |
|
| Q |
101 |
taatattaagctaatctgcgtcaatttcaaaagttccgtaaattgaaaatcaaaactttgagaggcttaagagtccaaggacctcctgaaaaacatcctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| |
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| T |
2359602 |
taatattaagctaatctgcgtcaatttcaaaagttccgtaaattgaaaatcaaaact--gagaggctcaagagtccaaggacctgctgaaaaacatcctc |
2359505 |
T |
|
| Q |
201 |
tgttacttcctcaatggaaaccattattttttggaatttcttagatgggttttgtattacagccatctgggtctttatttctgccatcaaaactagaact |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2359504 |
agttacttcctcaatggaaagcattattttttggaatttcttagatgggttttgtattatagccatctgggtctttatttctgccatcaaaactagaact |
2359405 |
T |
|
| Q |
301 |
tggtaatgtttgaagatgggtgtttcaaataggacttctttcatggatttctcttctagtgatggaggggct |
372 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2359404 |
tggtaaggtttgaagatgggtgtttcaaataggacttctttcatggatttctcttctagtgatggaggggct |
2359333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 40028912 - 40028820
Alignment:
| Q |
156 |
ctttgagaggcttaagagtccaaggacctcctgaa-aaacatcctctgttacttcctcaatggaaaccattattttttggaatttcttagatgggt |
250 |
Q |
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||||||| ||||||||||| ||||||||| ||||| ||||| |||||| ||||||| |||||| | || ||| ||| ||||||||||||||||| |
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| T |
40028912 |
ctttgagtggcttaagagtacaaggacctgctgaagaaacaacctctgctacttccacaatggga---atcattgtttcgaatttcttagatgggt |
40028820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 40029071 - 40028990
Alignment:
| Q |
5 |
accattccttctgcttaaaaccatcgtcaacaactatgcgtgttcaaatttgcaacgtatgaccaaataatcataaaattaa |
86 |
Q |
| |
|
||||||| |||| ||||||||| | |||||||| | | |||||||||||||||||| || |||||||| |||||||||| |
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| T |
40029071 |
accattctttctaattaaaaccaccatcaacaaccactcaagttcaaatttgcaacgtaagatcaaataattataaaattaa |
40028990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 42418471 - 42418099
Alignment:
| Q |
1 |
atctaccattccttctgcttaaaaccatcgtcaacaactatgcgtgttcaaatttgcaacgtatgaccaaataatcataaaattaaaggttgcacaaaac |
100 |
Q |
| |
|
|||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42418471 |
atctactattctttctgcttaaaacaatcgtcaacaactatgcgtgttcaaatttgtaacgtatgaccaaataatcataaaattaaaggttgcacaaaac |
42418372 |
T |
|
| Q |
101 |
taatattaagctaatctgcgtcaatttcaaaagttccgtaaattgaaaatcaaaactttgagaggcttaagagtccaaggacctcctgaaaaacatcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42418371 |
taatattaagctaatctgcgtcaatttcaaaagttccgtaaattgaaaatcaaaactttgagaggcttaagagtccaaggacctgctgaaaaacatcctc |
42418272 |
T |
|
| Q |
201 |
tgttacttcctcaatgg-aaaccattattttttggaatttcttagatgggttttgtattacagccatctgggtctttatttctgccatcaaaactagaac |
299 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
42418271 |
tgttacttcctcaatggaaaaccattattttttggaatttcttagatgggttttgtattataggcatctgggtctttatttctgccatcaaaactagaac |
42418172 |
T |
|
| Q |
300 |
ttggtaatgtttgaagatgggtgtttcaaataggacttctttcatggatttctcttctagtgatggaggggct |
372 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42418171 |
ttggtaaggtttgaagatgggtgtttcaaataggacttctttcatggatttctcttctagtgatggaagggct |
42418099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 18425709 - 18425670
Alignment:
| Q |
186 |
ctgaaaaacatcctctgttacttcctcaatggaaaccatt |
225 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |
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| T |
18425709 |
ctgaaaaacatcctctgttatttcctcaatggaaaccatt |
18425670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 32333393 - 32333764
Alignment:
| Q |
1 |
atctaccattccttctgcttaaaaccatcgtcaacaactatgcgtgttcaaatttgcaacgtatgaccaaataatcataaaattaaaggttgcacaaaac |
100 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
32333393 |
atctaccattctttctgcgtaaaaccatcgtcaacaactatgcgtgttcaaatttgcaacatatgaccaaataatcataaaattacaggttgcacaaaac |
32333492 |
T |
|
| Q |
101 |
taatattaagctaatctgcgtcaatttcaaaagttccgtaaattgaaaatcaaaactttgagaggcttaagagtccaaggacctcctgaaaaacatcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| || |
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|
| T |
32333493 |
taatattaagctaatctgcgtcaatttcaaaagttccgtaaattgaaaatcaaatttttgagaggctttagagtccaaggacctgctgaaaaacatcttc |
32333592 |
T |
|
| Q |
201 |
tgttacttcctcaatggaaaccattattttttggaatttcttagatgggttttgtattacagccatctgggtctttatttctgccatcaaaactagaact |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
32333593 |
tgttacttccttaatggaaaccattattttttggaatttcttagatgggttttgtattatagccatccgggtctttatttctgccatcaaaactagaact |
32333692 |
T |
|
| Q |
301 |
tggtaatgtttgaagatgggtgtttcaaataggacttctttcatggatttctcttctagtgatggaggggct |
372 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32333693 |
tggtaaggtttgaagatgggtgtttcaaataggacttctttcatggatttctcttctagtgatggaggggct |
32333764 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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