View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20943_high_15 (Length: 387)
Name: NF20943_high_15
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 24864784 - 24864421
Alignment:
| Q |
16 |
aaaatgatgtacataagtgtgaggctatagataatgatatcttggttattgacagtgattgatgtttctgaaagctagaaaaacataggagaatctgcac |
115 |
Q |
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| T |
24864784 |
aaaatgatgtacataagtgtgaggctatagataatgatatcttggttattgacagtgattgatgtttctgaaagctagaaaaacataggagaatctgcac |
24864685 |
T |
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| Q |
116 |
attttcggcannnnnnnn-gtcaggttaatcatgttgagtagcatgtgcgtcagtcaaatctaaggatggatcatgatgatcagtcacaacaaaaacagt |
214 |
Q |
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| T |
24864684 |
attttcggcatttttttttgtcaggttaatcatgttgagtagcatgtgcgtcagtcaaatctaaggatggatcatgatgatcagtcacaacaaaaacagt |
24864585 |
T |
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| Q |
215 |
ggaaaaaattatatatcaacagaagtatttatattaaatctttagacaagaataagttacatcatattaagaattcatcatttgacgcaaagaaacagct |
314 |
Q |
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| T |
24864584 |
ggacaaaattatatatcaacagaagtatttatattaaatctttagacaagaataagttacatcatattaagaattcatcatttgacgcaaagaaacagct |
24864485 |
T |
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| Q |
315 |
cctctaaattaaggttcactaaccttgagtcatccgatgcaaaagcaacatcagatagaccttt |
378 |
Q |
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| T |
24864484 |
cctctaaattaaggttcactaaccttgagtcatccgatgcaaaagcaacatcagatagaccttt |
24864421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 379
Target Start/End: Complemental strand, 33052844 - 33052802
Alignment:
| Q |
337 |
ccttgagtcatccgatgcaaaagcaacatcagatagacctttg |
379 |
Q |
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| T |
33052844 |
ccttgagtcatttgatgcaaaagcaacatcagatagacatttg |
33052802 |
T |
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