View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20943_high_19 (Length: 352)
Name: NF20943_high_19
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 64 - 308
Target Start/End: Original strand, 4388692 - 4388936
Alignment:
| Q |
64 |
gattattatttgtgaagaaaatatttcatgactacaaagagcagcatgattattgagacaagttgtctgttggaaagcgaggagatgcttcatatgatgg |
163 |
Q |
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| T |
4388692 |
gattattatttgtgaagaaaatatttcatgactacaaagagcagcatgattattgagacaagttgtcttttggaaagcgaggagatgcttcatatgatgg |
4388791 |
T |
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| Q |
164 |
agcggttgaatttagaagtggaatacattagagacatggaaaaacttatgtttatagcaagcttcaagaatcaagaaaattattgcatcatgaagagaaa |
263 |
Q |
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| T |
4388792 |
agcggttgaatttagaagtggaatacattagagacatggaaaaacttatgtttatagcaagcttcaagaatcaagaaaattattgcatcatgaagagaaa |
4388891 |
T |
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| Q |
264 |
gagaagaatgaagattagttacacagataacttgttggacggttt |
308 |
Q |
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| T |
4388892 |
gagaagaatgaagattagttacacagataacttgttggacagttt |
4388936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 4388598 - 4388658
Alignment:
| Q |
1 |
tggcgcatcatattgtaaaggaacaagagaaggacaaaaccacttgaggagaaaggataca |
61 |
Q |
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| T |
4388598 |
tggcgcatcatattgtaaaggaacaaaagaaggacaaaaccacttgaggagaaaggataca |
4388658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 334
Target Start/End: Original strand, 4388956 - 4388986
Alignment:
| Q |
304 |
ggtttctatagtctacaatcattgtaataca |
334 |
Q |
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| T |
4388956 |
ggtttctatagtctacaatcattgtaataca |
4388986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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