View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20943_high_30 (Length: 253)

Name: NF20943_high_30
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20943_high_30
NF20943_high_30
[»] chr6 (4 HSPs)
chr6 (1-245)||(20772098-20772343)
chr6 (132-241)||(27177007-27177118)
chr6 (131-236)||(10498101-10498208)
chr6 (132-188)||(33900099-33900156)
[»] chr2 (7 HSPs)
chr2 (133-241)||(29923843-29923953)
chr2 (146-241)||(5357563-5357660)
chr2 (133-238)||(11915371-11915478)
chr2 (131-225)||(27249739-27249835)
chr2 (130-230)||(12037351-12037454)
chr2 (130-186)||(25271846-25271903)
chr2 (150-189)||(29699525-29699565)
[»] chr8 (3 HSPs)
chr8 (129-224)||(42456824-42456921)
chr8 (145-202)||(41581132-41581190)
chr8 (130-189)||(5920765-5920825)
[»] chr4 (4 HSPs)
chr4 (132-241)||(18489664-18489774)
chr4 (131-241)||(24699347-24699459)
chr4 (132-241)||(21512062-21512173)
chr4 (131-225)||(45073260-45073356)
[»] chr3 (4 HSPs)
chr3 (161-241)||(39028167-39028249)
chr3 (141-241)||(54524985-54525087)
chr3 (131-241)||(27844599-27844711)
chr3 (132-186)||(51381055-51381110)
[»] chr5 (2 HSPs)
chr5 (133-234)||(9379258-9379361)
chr5 (132-210)||(37283665-37283743)
[»] chr7 (3 HSPs)
chr7 (146-226)||(2729800-2729882)
chr7 (133-178)||(7682789-7682834)
chr7 (146-190)||(28443763-28443808)
[»] chr1 (5 HSPs)
chr1 (149-194)||(36979751-36979797)
chr1 (132-190)||(28108184-28108244)
chr1 (133-241)||(42787611-42787722)
chr1 (132-202)||(46915909-46915981)
chr1 (146-241)||(68906-69001)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 20772343 - 20772098
Alignment:
Q  1 atgatcaatctagctatggtatgagcttagaaaaaatagcatatgtgcatgatggcaagcatattttgacaacagatgaggtggcatatgtcaactatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  20772343 atgatcaatctagctatggtatgagcttagaaaaaatagcatatgtgcatgatggcatgcttattttgacaacagatgaggtggcatatgtcaactatgg 20772244  T
Q  101 gaattcatagatgccactcatataatatcttgaaaattgctgtatacacttctaacaaggctgaaacacaccaa-aaaagacgtaaatgttaatctacag 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||    
T  20772243 gaattcatagatgccactcatataatatcttgaaaatttctgtatacacttttaacaaggttgaaacacaccaaaaaaagacgtaaatgttaatctacag 20772144  T
Q  200 ttatctgccgcggttaaaatccatcgacaattaactgccgatctct 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  20772143 ttatctgccgcggttaaaatccatcgacaattaactgccgatctct 20772098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 27177118 - 27177007
Alignment:
Q  132 gaaaattgctgtatacacttctaacaaggctgaaacacacca-aaaaagacgtaaatgttaatctacagttatctgccg-cggttaaaatccatcgacaa 229  Q
    |||||||| ||| ||| |||||||||||  |||||||||  | ||||||||||||||||| ||| ||||||| |||||| || ||||||| |||||| |     
T  27177118 gaaaattggtgtgtacgcttctaacaagattgaaacacattagaaaaagacgtaaatgttcatcgacagttaactgccgccgattaaaattcatcgatag 27177019  T
Q  230 ttaactgccgat 241  Q
    ||||||||||||    
T  27177018 ttaactgccgat 27177007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 10498101 - 10498208
Alignment:
Q  131 tgaaaattgctgtatacacttctaacaaggctgaaacacacca-aaaaagacgtaaatgttaatctacagttatctgcc-gcggttaaaatccatcgaca 228  Q
    ||||||||||  |||| |||||||| || | ||||||||| || ||||||||||||||||| ||| ||||||| |||||  || ||||||| ||||||||    
T  10498101 tgaaaattgcaatataaacttctaataaagttgaaacacatcagaaaaagacgtaaatgttcatcgacagttaactgccaccgtttaaaattcatcgaca 10498200  T
Q  229 attaactg 236  Q
     |||||||    
T  10498201 gttaactg 10498208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 33900099 - 33900156
Alignment:
Q  132 gaaaattgctgtatacacttctaacaaggctgaaacacacca-aaaaagacgtaaatg 188  Q
    |||||||| ||| |||||||| ||||| || ||||||||||| |||||||||||||||    
T  33900099 gaaaattgttgtttacacttcaaacaatgccgaaacacaccagaaaaagacgtaaatg 33900156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 29923843 - 29923953
Alignment:
Q  133 aaaattgctgtatacacttctaacaaggctgaaacacacca-aaaaagacgtaaatgttaatctacagttatctgccgc-ggttaaaatccatcgacaat 230  Q
    ||||||| ||||||||| | | | |||||||||||||| || |||||||| |||||||| ||| ||||||| ||||||| ||||||||||||||  ||||    
T  29923843 aaaattgttgtatacacatgtgataaggctgaaacacaacagaaaaagacataaatgtttatcgacagttaactgccgccggttaaaatccatcagcaat 29923942  T
Q  231 taactgccgat 241  Q
    |||||||||||    
T  29923943 taactgccgat 29923953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 5357563 - 5357660
Alignment:
Q  146 acacttctaacaaggctgaaacacacca-aaaaagacgtaaatgttaatctacagttatctgccg-cggttaaaatccatcgacaattaactgccgat 241  Q
    |||||||||||||||||||||||||| | ||||||||||||||||  ||| ||||||| |||  | |||||||| |||||||||| ||||||||||||    
T  5357563 acacttctaacaaggctgaaacacactagaaaaagacgtaaatgtccatcgacagttaactgttgccggttaaattccatcgacagttaactgccgat 5357660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 11915371 - 11915478
Alignment:
Q  133 aaaattgctgtatacacttctaacaaggctgaaacacacca-aaaaagacgtaaatgttaatctacagttatctgccg-cggttaaaatccatcgacaat 230  Q
    ||||||| |||| |||||||||||||| ||||||||||||| ||||| | ||||||||| ||| ||||||| || | | ||||||||||||||| || ||    
T  11915371 aaaattggtgtacacacttctaacaagactgaaacacaccagaaaaaaatgtaaatgttcatcgacagttaactactgccggttaaaatccatcaacgat 11915470  T
Q  231 taactgcc 238  Q
    ||||||||    
T  11915471 taactgcc 11915478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 27249739 - 27249835
Alignment:
Q  131 tgaaaattgctgtatacacttctaacaaggctgaaacacacc-aaaaaagacgtaaatgttaatctacagttatctgccg-cggttaaaatccatcg 225  Q
    ||||||||| |||||||||||| |||||||||||||||||||  ||||||| ||||||||  |||  |||||| |||||| | ||||||||||||||    
T  27249739 tgaaaattgttgtatacacttcaaacaaggctgaaacacaccggaaaaagatgtaaatgtccatcggcagttaactgccgcctgttaaaatccatcg 27249835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 12037454 - 12037351
Alignment:
Q  130 ttgaaaattgctgtatacacttctaacaaggctgaa-acacacca-aaaaagacgtaaatgttaatctacagttatctgccg-cggttaaaatccatcga 226  Q
    |||||||||||||||||||| ||||| ||| | ||| |||||||| ||||||||||||||||| ||   |||||| || ||| |||||||||||||| ||    
T  12037454 ttgaaaattgctgtatacacatctaaaaagccagaacacacaccagaaaaagacgtaaatgttcattggcagttaactaccgtcggttaaaatccattga 12037355  T
Q  227 caat 230  Q
    ||||    
T  12037354 caat 12037351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 25271903 - 25271846
Alignment:
Q  130 ttgaaaattgctgtatacacttctaacaaggctgaaacacacca-aaaaagacgtaaa 186  Q
    |||||||||| ||| |||||||| ||||||||||||||||| || |||||||||||||    
T  25271903 ttgaaaattgttgtttacacttcaaacaaggctgaaacacatcagaaaaagacgtaaa 25271846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 189
Target Start/End: Original strand, 29699525 - 29699565
Alignment:
Q  150 ttctaacaaggctgaaacacacca-aaaaagacgtaaatgt 189  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  29699525 ttctaacaaggctgaaacacaccagaaaaagacgtaaatgt 29699565  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 42456824 - 42456921
Alignment:
Q  129 cttgaaaattgctgtatacacttctaacaaggctgaaacacacca-aaaaagacgtaaatgttaatctacagttatctgccg-cggttaaaatccatc 224  Q
    |||||||||||||||||||||||||||||||||||||| ||| || |||||||||||| |||  ||| ||| ||| || ||| |||||||||||||||    
T  42456824 cttgaaaattgctgtatacacttctaacaaggctgaaatacatcagaaaaagacgtaattgtccatcgacaattaactaccgtcggttaaaatccatc 42456921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 41581190 - 41581132
Alignment:
Q  145 tacacttctaacaaggctgaaacacacca-aaaaagacgtaaatgttaatctacagtta 202  Q
    |||||||| |||||||||||||||||| | ||||||||||||||||  ||| |||||||    
T  41581190 tacacttcaaacaaggctgaaacacactagaaaaagacgtaaatgtccatcgacagtta 41581132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 5920765 - 5920825
Alignment:
Q  130 ttgaaaattgctgtatacacttctaacaaggctgaaacacacca-aaaaagacgtaaatgt 189  Q
    |||||||||| |||  ||||||||||||||||| ||||||| || ||||| ||||||||||    
T  5920765 ttgaaaattgttgttcacacttctaacaaggctaaaacacagcagaaaaatacgtaaatgt 5920825  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 18489774 - 18489664
Alignment:
Q  132 gaaaattgctgtatacacttctaacaaggctgaaacacacca-aaaaagacgtaaatgttaatctacagttatctgccg-cggttaaaatccatcgacaa 229  Q
    |||||||| |||  ||||||||||||||| ||||| |||||| |||||||| |||||||  ||| ||||||| |||||| |||||||||||||||  ||     
T  18489774 gaaaattgatgttaacacttctaacaaggttgaaatacaccagaaaaagacataaatgtctatc-acagttaactgccgtcggttaaaatccatcagcag 18489676  T
Q  230 ttaactgccgat 241  Q
    ||||||||||||    
T  18489675 ttaactgccgat 18489664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 241
Target Start/End: Original strand, 24699347 - 24699459
Alignment:
Q  131 tgaaaattgctgtatacacttctaacaaggctgaaacacacca-aaaaagacgtaaatgttaatctacagttatctgccgcg-gttaaaatccatcgaca 228  Q
    ||||||||| ||| |||| ||| |||| |||| ||||| |||| ||||||||||||||||  |||  |||||| |||||||  |||||||||||||| ||    
T  24699347 tgaaaattgttgtttacaattcaaacagggctaaaacataccagaaaaagacgtaaatgtccatcgccagttaactgccgccagttaaaatccatcggca 24699446  T
Q  229 attaactgccgat 241  Q
     |||||| |||||    
T  24699447 gttaactaccgat 24699459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 21512173 - 21512062
Alignment:
Q  132 gaaaattgctgtatacacttctaacaaggctgaaacacacca-aaaaagacgtaaatgttaatctacagttatctgccg-cggttaaaatccatcgacaa 229  Q
    |||||||| |||  ||||||  ||||||| |||||||||||| ||||||||||||||||  |||  |||||| |||| | ||||||||||  ||| |||     
T  21512173 gaaaattgttgttgacactttaaacaaggatgaaacacaccagaaaaagacgtaaatgtccatcagcagttaactgcagccggttaaaattgatcaacag 21512074  T
Q  230 ttaactgccgat 241  Q
    ||||||||||||    
T  21512073 ttaactgccgat 21512062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 225
Target Start/End: Complemental strand, 45073356 - 45073260
Alignment:
Q  131 tgaaaattgctgtatacacttctaacaaggctgaaacacacca-aaaaagacgtaaatgttaatctacagttatctgccgc-ggttaaaatccatcg 225  Q
    ||||||||| ||||||||| | | | |||| |||||||||| | ||||||| ||||||||  |||  |||||| ||||||| |||||||||||||||    
T  45073356 tgaaaattgttgtatacacatgtgataaggttgaaacacactagaaaaagatgtaaatgtccatcggcagttaactgccgccggttaaaatccatcg 45073260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 39028249 - 39028167
Alignment:
Q  161 ctgaaacacacca-aaaaagacgtaaatgttaatctacagttatctgccg-cggttaaaatccatcgacaattaactgccgat 241  Q
    ||||||||||||| ||||||||||||||||| |||  |||||| |||||| |||||||||| |||||||| |||| |||||||    
T  39028249 ctgaaacacaccagaaaaagacgtaaatgttcatcggcagttaactgccgccggttaaaattcatcgacagttaattgccgat 39028167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 54525087 - 54524985
Alignment:
Q  141 tgtatacacttctaacaaggctgaaacacacca-aaaaagacgtaaatgttaatctacagttatctgccg-cggttaaaatccatcgacaattaactgcc 238  Q
    ||||||||||||||| ||||||||||||||||| |||||  |||||||||  ||   |||||| |||||| |||||||| |||||| ||| |||||||||    
T  54525087 tgtatacacttctaagaaggctgaaacacaccagaaaaaatcgtaaatgtctattggcagttaactgccgccggttaaattccatcaacagttaactgcc 54524988  T
Q  239 gat 241  Q
    |||    
T  54524987 gat 54524985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 241
Target Start/End: Original strand, 27844599 - 27844711
Alignment:
Q  131 tgaaaattgctgtatacacttctaacaaggctgaaacacacca-aaaaagacgtaaatgttaatctacagttatctgccg-cggttaaaatccatcgaca 228  Q
    ||||||||| ||||| |||| ||||||||| ||||| |||| | ||||| |||||||| |  ||||||||||| |||||| |||||||||| |||||  |    
T  27844599 tgaaaattgttgtatgcactcctaacaaggttgaaatacacaagaaaaatacgtaaatatccatctacagttaactgccgtcggttaaaattcatcggta 27844698  T
Q  229 attaactgccgat 241  Q
     ||||||||||||    
T  27844699 gttaactgccgat 27844711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 51381110 - 51381055
Alignment:
Q  132 gaaaattgctgtatacacttctaacaaggctgaaacacacca-aaaaagacgtaaa 186  Q
    ||||||||| || |||||||| |||||||||||||||||||| |||||||||||||    
T  51381110 gaaaattgccgtttacacttcaaacaaggctgaaacacaccagaaaaagacgtaaa 51381055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 9379361 - 9379258
Alignment:
Q  133 aaaattgctgtatacacttctaacaaggctgaaacacacca-aaaaagacgtaaatgttaatctacagttatctgccg-cggttaaaatccatcgacaat 230  Q
    ||||||||| ||||||||||||| |||||||||| |||||| |||||||| |||||  | ||| | | ||| |||||| |||||||||| |||||||| |    
T  9379361 aaaattgctatatacacttctaagaaggctgaaatacaccagaaaaagacataaattctcatcgataattaactgccgccggttaaaattcatcgacagt 9379262  T
Q  231 taac 234  Q
    ||||    
T  9379261 taac 9379258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 37283665 - 37283743
Alignment:
Q  132 gaaaattgctgtatacacttctaacaaggctgaaacacaccaaaaaagacgtaaatgttaatctacagttatctgccgc 210  Q
    |||||||| | |||||||||| ||||| ||||||||||| || ||||||| ||||| |  ||| |||||||||||||||    
T  37283665 gaaaattgttctatacacttcaaacaaagctgaaacacatcagaaaagacataaatatccatcaacagttatctgccgc 37283743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 2729800 - 2729882
Alignment:
Q  146 acacttctaacaaggctgaaacacacca-aaaaagacgtaaatgttaatctacagttatctgcc-gcggttaaaatccatcga 226  Q
    ||||||||||||||||||||||||| || ||||||||||||||||  |||  |||||| |||||  | |||||||||||||||    
T  2729800 acacttctaacaaggctgaaacacaacagaaaaagacgtaaatgtccatcggcagttaactgccaccagttaaaatccatcga 2729882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 7682834 - 7682789
Alignment:
Q  133 aaaattgctgtatacacttctaacaaggctgaaacacaccaaaaaa 178  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||||    
T  7682834 aaaattgctgtttacacttctaataaggctgaaacacatcaaaaaa 7682789  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 28443808 - 28443763
Alignment:
Q  146 acacttctaacaaggctgaaacacacca-aaaaagacgtaaatgtt 190  Q
    ||||||| |||||||||||||||||| | |||||||||||||||||    
T  28443808 acacttcaaacaaggctgaaacacactagaaaaagacgtaaatgtt 28443763  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 36979751 - 36979797
Alignment:
Q  149 cttctaacaaggctgaaacacacca-aaaaagacgtaaatgttaatc 194  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||    
T  36979751 cttctaacaaagctgaaacacaccagaaaaagacgtaaatgttaatc 36979797  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 28108244 - 28108184
Alignment:
Q  132 gaaaattgctgtatacacttctaacaaggctgaaacacacc--aaaaaagacgtaaatgtt 190  Q
    |||||||| |||  ||||||||||||||||||||||| |||  ||||||||||||||||||    
T  28108244 gaaaattgttgttcacacttctaacaaggctgaaacaaaccagaaaaaagacgtaaatgtt 28108184  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 42787722 - 42787611
Alignment:
Q  133 aaaattgctgtatacacttctaacaaggctgaaacacacc--aaaaaagacgtaaatgttaatctacagttatctgccg-cggttaaaatccatcgaca- 228  Q
    ||||||| |||||||||||||||||| ||| |||||||||  |||||| |||||||| |  ||| |||||||  ||||| |||||||||||||||| ||     
T  42787722 aaaattgttgtatacacttctaacaa-gctaaaacacaccagaaaaaaaacgtaaatatgtatcaacagttaattgccgtcggttaaaatccatcggcat 42787624  T
Q  229 attaactgccgat 241  Q
     ||||||||||||    
T  42787623 gttaactgccgat 42787611  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 46915909 - 46915981
Alignment:
Q  132 gaaaattgctgtatacacttctaacaaggctgaaacacacc--aaaaaagacgtaaatgttaatctacagtta 202  Q
    |||||||| |||||| ||||| |  ||||||||||||||||  |||||||||||||||||| ||| |||||||    
T  46915909 gaaaattgttgtatatacttcaactaaggctgaaacacaccaaaaaaaagacgtaaatgttcatcgacagtta 46915981  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 68906 - 69001
Alignment:
Q  146 acacttctaacaaggctgaaacacaccaaaaaagacgtaaatgttaatctacagttatctgccg-cggttaaaatccatcgacaattaactgccgat 241  Q
    |||||||||||||  ||||||||||| | |||||||||||||||  ||| ||||||| ||| || |||||||||| |||| ||| |||||| |||||    
T  68906 acacttctaacaaaactgaaacacactagaaaagacgtaaatgtctatcgacagttaactgtcgtcggttaaaattcatc-acacttaactaccgat 69001  T

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