View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20943_high_32 (Length: 251)
Name: NF20943_high_32
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32702551 - 32702763
Alignment:
| Q |
1 |
atatgtcatcatggctttctagtcaatactatggtaatatttatgaccttagttttctctttgggcagggcagcatgtgatcggttgcatttttgttaaa |
100 |
Q |
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| T |
32702551 |
atatgtaatcatggctttctagt------tatggtaatatttatgaccttagttttctctttgggc-----agcatgtgatcggttgcatttttgttaaa |
32702639 |
T |
|
| Q |
101 |
gcggttaaaaacctcctcagtgacaccttcaccaaaatgactaac---aaacaaaggttcagccacagcccttatgcattgtgccacatcgtatccatta |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32702640 |
gcggttaaaaacctcctcagtgacaccttcaccaaaatgactaaccaacaacaaaggttcagccacagcccttatgcattgtgccacatcgtatccatta |
32702739 |
T |
|
| Q |
198 |
tcaagttcattcaaatttacttca |
221 |
Q |
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|||||||||||||||||||||||| |
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| T |
32702740 |
tcaagttcattcaaatttacttca |
32702763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 32626882 - 32626954
Alignment:
| Q |
123 |
acaccttcaccaaaatgactaacaaacaaaggttcagccacagcccttatgcattgtgccacatcgtatccat |
195 |
Q |
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| T |
32626882 |
acaccttcaccaaaatgactgactagcaaaggttcagccaaagctctcatgcattgtgccacattgtatccat |
32626954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 91 - 195
Target Start/End: Original strand, 5810555 - 5810659
Alignment:
| Q |
91 |
ttttgttaaagcggttaaaaacctcctcagtgacaccttcaccaaaatgactaacaaacaaaggttcagccacagcccttatgcattgtgccacatcgta |
190 |
Q |
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| T |
5810555 |
ttttcttatagcgattaaaaatctctttaatgacaccttcaccaaagtgactagctagcaaaggttcagccacagcccttatgcattgtgccacattgta |
5810654 |
T |
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| Q |
191 |
tccat |
195 |
Q |
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||||| |
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| T |
5810655 |
tccat |
5810659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 27735885 - 27735959
Alignment:
| Q |
121 |
tgacaccttcaccaaaatgactaacaaacaaaggttcagccacagcccttatgcattgtgccacatcgtatccat |
195 |
Q |
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|||||||||||||||| |||||||| | ||||||||||||||||||||| ||||||||||||| || |||||||| |
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| T |
27735885 |
tgacaccttcaccaaagtgactaactagcaaaggttcagccacagccctaatgcattgtgccatattgtatccat |
27735959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 21941694 - 21941752
Alignment:
| Q |
100 |
agcggttaaaaacctcctcagtgacaccttcaccaaaatgactaacaaacaaaggttca |
158 |
Q |
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|||||||||| ||||| ||||| |||||||||||||||||||||| || |||||||||| |
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| T |
21941694 |
agcggttaaatacctcttcagtcacaccttcaccaaaatgactaataagcaaaggttca |
21941752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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