View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20943_low_10 (Length: 475)
Name: NF20943_low_10
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 20358536 - 20358926
Alignment:
| Q |
19 |
agagataaaaggaaatgaagaaaaaggagaaacaagatgaacacctgataaatcagagatggttcaatggaatattaaagaagattcttgaagaattatt |
118 |
Q |
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| T |
20358536 |
agagataaaaggaaatgaagaaaaaggagaaacaagatgaacacctgataaatcagagatggttcaatgggatattaaagaagattcttgaagaattctt |
20358635 |
T |
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| Q |
119 |
ggatgaaggatg------ttgctaatgtaaatttgaataatgagagaacaagtgacaaactgatatggtggtgtgacaatcatatgtgaaataaattttg |
212 |
Q |
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| T |
20358636 |
ggatgaaggatgtttgttttgttaatgtaaatttgaataatgagagaacaagtgacaaactgatatcgtggtgtgacaatcatatgtgaaataaattttg |
20358735 |
T |
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| Q |
213 |
caattttattttctatatcattaatgtannnnnnnnaaac----------------atatgaattgccacattgttcagtgatttgtaaactgattattc |
296 |
Q |
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| T |
20358736 |
caattttattttctatatcattaatgtattgtttttaaacatatgaattgccaaagatatgaattgccacattgttcagtgatttgtaaactgattattc |
20358835 |
T |
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| Q |
297 |
agtataacacattagatgaaataagtcaaaaaaggtagcaatttaa--nnnnnnnngtgaaattctaaatattgttgaccatatttttgga |
385 |
Q |
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| T |
20358836 |
agtataacacattagacgaaataagtcaaaaaatgtagcaatttaatttttgttttgtgaaattctaaatattgtagaccatatttttgga |
20358926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 20359316 - 20359354
Alignment:
| Q |
133 |
gctaatgtaaatttgaataatgagagaacaagtgacaaa |
171 |
Q |
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| T |
20359316 |
gctaatgtaaatttgaataatgagagaacaagtaacaaa |
20359354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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