View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20943_low_16 (Length: 373)

Name: NF20943_low_16
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20943_low_16
NF20943_low_16
[»] chr3 (10 HSPs)
chr3 (234-362)||(23231328-23231456)
chr3 (18-117)||(8936054-8936153)
chr3 (248-362)||(23235220-23235334)
chr3 (22-91)||(43178610-43178679)
chr3 (19-90)||(1294907-1294978)
chr3 (19-90)||(42388745-42388816)
chr3 (19-86)||(26841307-26841373)
chr3 (19-89)||(36563064-36563134)
chr3 (19-85)||(52397399-52397465)
chr3 (19-91)||(50175361-50175433)
[»] chr8 (5 HSPs)
chr8 (19-138)||(40995773-40995893)
chr8 (19-140)||(9799200-9799322)
chr8 (22-141)||(7222798-7222913)
chr8 (19-86)||(45397512-45397578)
chr8 (25-91)||(885706-885774)
[»] chr5 (10 HSPs)
chr5 (19-140)||(21067621-21067743)
chr5 (22-139)||(28988341-28988460)
chr5 (19-89)||(19187145-19187215)
chr5 (20-90)||(39753317-39753387)
chr5 (22-86)||(38282505-38282569)
chr5 (41-117)||(14122928-14123004)
chr5 (19-89)||(36603697-36603767)
chr5 (19-86)||(1179953-1180020)
chr5 (19-115)||(24233181-24233277)
chr5 (36-133)||(36974030-36974127)
[»] chr1 (9 HSPs)
chr1 (19-140)||(45484990-45485111)
chr1 (19-140)||(48611679-48611801)
chr1 (19-90)||(32022615-32022686)
chr1 (19-140)||(19940549-19940670)
chr1 (42-89)||(34663138-34663185)
chr1 (24-89)||(1408629-1408694)
chr1 (22-86)||(4941199-4941263)
chr1 (22-72)||(48768311-48768361)
chr1 (19-86)||(40605156-40605220)
[»] chr4 (9 HSPs)
chr4 (19-86)||(27756475-27756542)
chr4 (19-140)||(19328826-19328948)
chr4 (28-86)||(25474657-25474715)
chr4 (19-91)||(3913657-3913729)
chr4 (19-86)||(3427871-3427938)
chr4 (19-86)||(43159860-43159927)
chr4 (28-89)||(4687364-4687425)
chr4 (22-86)||(20032924-20032989)
chr4 (22-78)||(46871305-46871361)
[»] chr2 (8 HSPs)
chr2 (19-89)||(9521066-9521136)
chr2 (19-138)||(16634424-16634544)
chr2 (22-86)||(3037421-3037485)
chr2 (19-149)||(27322754-27322882)
chr2 (22-90)||(9116404-9116472)
chr2 (39-90)||(15371435-15371486)
chr2 (19-85)||(6983185-6983251)
chr2 (103-139)||(35501506-35501542)
[»] scaffold0272 (1 HSPs)
scaffold0272 (19-136)||(6112-6230)
[»] chr7 (5 HSPs)
chr7 (19-91)||(30486950-30487022)
chr7 (19-90)||(47903887-47903956)
chr7 (19-86)||(42468949-42469016)
chr7 (19-89)||(37720555-37720625)
chr7 (19-91)||(15972134-15972206)
[»] scaffold0316 (1 HSPs)
scaffold0316 (19-86)||(1290-1357)
[»] chr6 (1 HSPs)
chr6 (100-140)||(7246638-7246678)


Alignment Details
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 234 - 362
Target Start/End: Complemental strand, 23231456 - 23231328
Alignment:
Q  234 aacccttccatttcaaaattcaaaatattgccttcttttagatttgaacgagaatgctttcttgttaaatatggatttggttaagatcatgtaattgatg 333  Q
    ||||||||||||  ||||| |||||||||||||||||||| | || || |||||||   | ||||||||||||| ||||| || |||||||| | |||||    
T  23231456 aacccttccattagaaaatccaaaatattgccttcttttaaaattcaaggagaatgtggttttgttaaatatggctttggctacgatcatgtgaatgatg 23231357  T
Q  334 tttacaaggtggttgctgttttttcctat 362  Q
    |||||||||||||||||||||||||||||    
T  23231356 tttacaaggtggttgctgttttttcctat 23231328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 8936153 - 8936054
Alignment:
Q  18 caagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcc 117  Q
    ||||||||||||||||| ||||| |||||||  || ||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||||    
T  8936153 caagtattacattgaaacttgtgctgtcaacccttgaaaagcataaaaagtgttacttttattttaaaacttccttttttaagtttccttaaccagtgcc 8936054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 248 - 362
Target Start/End: Complemental strand, 23235334 - 23235220
Alignment:
Q  248 aaaattcaaaatattgccttcttttagatttgaacgagaatgctttcttgttaaatatggatttggttaagatcatgtaattgatgtttacaaggtggtt 347  Q
    |||||||||||||||||||||||||| | || || |||||||   | | ||||||||||| ||||| || |||||||| |  |||||||||||| | |||    
T  23235334 aaaattcaaaatattgccttcttttaaaattcaaggagaatgtggtttagttaaatatggctttggctacgatcatgtgaaggatgtttacaagatcgtt 23235235  T
Q  348 gctgttttttcctat 362  Q
    |||||||||||||||    
T  23235234 gctgttttttcctat 23235220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 43178610 - 43178679
Alignment:
Q  22 tattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttcc 91  Q
    ||||||||||||||||||  ||||||||||| ||||| ||||||| ||||||||| ||||||||||||||    
T  43178610 tattacattgaaatttgtactgtcaacttttgaaaagtataaaaaatgttacttttattttaaaacttcc 43178679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 1294978 - 1294907
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 90  Q
    |||||||||||||||||||||| ||||| || || | || |||||||| |||||||||||||||||||||||    
T  1294978 aagtattacattgaaatttgtgctgtcagctcttcataaacataaaaaatgttactttcattttaaaacttc 1294907  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 42388745 - 42388816
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 90  Q
    |||||||  |||| |||||||| ||||||||||| |||| |||||||||||||| |||||| ||||||||||    
T  42388745 aagtattgtattggaatttgtgctgtcaacttttcaaaaacataaaaagtgttattttcatcttaaaacttc 42388816  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 26841373 - 26841307
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 86  Q
    |||| ||||||||||||||| ||||||||| | |||||| |||||||||||||| ||| | |||||||    
T  26841373 aagttttacattgaaatttgggttgtcaac-tcttaaaatcataaaaagtgttatttttactttaaaa 26841307  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 36563064 - 36563134
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 89  Q
    |||||||  |||| || ||||| ||||||||  | ||||||||||||||||||| ||||| ||||||||||    
T  36563064 aagtattgtattgtaacttgtgatgtcaactcctcaaaagcataaaaagtgttattttcactttaaaactt 36563134  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 52397399 - 52397465
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaa 85  Q
    ||||||||||||  |||||||||||||||||| | ||||| ||||||  || || ||||||||||||    
T  52397399 aagtattacattagaatttgtgttgtcaacttctaaaaagtataaaagttgatattttcattttaaa 52397465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 50175361 - 50175433
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttcc 91  Q
    ||||||| ||||| |||||||||||||||||  | |||| |||||||| ||||| ||| | ||||||| ||||    
T  50175361 aagtattgcattggaatttgtgttgtcaactcctaaaaaacataaaaattgttatttttactttaaaatttcc 50175433  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 40995893 - 40995773
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcct 118  Q
    ||||||||||||||||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||||       |||||| |||||| ||||||    
T  40995893 aagtattacattgaaatttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaacttccttttcttagtttcattaaccggtgcct 40995794  T
Q  119 cgga-gcaccggttaacatga 138  Q
    | || |||| |||||||||||    
T  40995793 cagaggcactggttaacatga 40995773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 9799322 - 9799200
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcct 118  Q
    ||||||||||||| || |||||||||||||| || ||||| |||||||||||||| || ||||||| |||| |       |||||||||||||||||||     
T  9799322 aagtattacattggaacttgtgttgtcaactcttgaaaagtataaaaagtgttacctttattttaagactttcaatttttagtttccttaaccagtgcca 9799223  T
Q  119 c-ggagcaccggttaacatgacc 140  Q
    | || |||| |||||||||||||    
T  9799222 cgggggcactggttaacatgacc 9799200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 7222913 - 7222798
Alignment:
Q  22 tattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcctcgg 121  Q
    ||||||||||||||||||| |||  ||| || |||| |||||||||||||||||| ||||||||| || |       |||||||||||| |||| || |     
T  7222913 tattacattgaaatttgtgctgt--actattcaaaaacataaaaagtgttacttttattttaaaattttc--tttttagtttccttaactagtgtctgga 7222818  T
Q  122 agcaccggttaacatgacct 141  Q
     |||||||||||||||||||    
T  7222817 tgcaccggttaacatgacct 7222798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 45397512 - 45397578
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 86  Q
    ||||||||||||||||||| |||||||||||| | |||||  | |||||||||| ||| |||||||||    
T  45397512 aagtattacattgaaatttttgttgtcaacttctaaaaag-tttaaaagtgttatttttattttaaaa 45397578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 885706 - 885774
Alignment:
Q  25 tacattgaaatttgtgttgtcaactttttaaaagcat--aaaaagtgttactttcattttaaaacttcc 91  Q
    ||||||| |||||||||||||||||  ||||||| ||  ||||| ||||| ||||||||||||| ||||    
T  885706 tacattggaatttgtgttgtcaactccttaaaagaataaaaaaaatgttattttcattttaaaatttcc 885774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 21067621 - 21067743
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcct 118  Q
    |||||||||||||||| ||||||||||| || || |||||||||||||||  |||||||||||||||||||||       ||||||||||||||||||      
T  21067621 aagtattacattgaaacttgtgttgtcatctcttcaaaagcataaaaagtagtactttcattttaaaacttccttttttgagtttccttaaccagtgcac 21067720  T
Q  119 cgga-gcaccggttaacatgacc 140  Q
    |||| ||| ||||||||||||||    
T  21067721 cggaggcatcggttaacatgacc 21067743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 28988460 - 28988341
Alignment:
Q  22 tattacattgaaatttgtgttgtcaactttttaaaagcata--aaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcctc 119  Q
    |||||||||||||||||||| |||||||||| |||||||||  |||||||||||||||||||||||| ||||       ||||||||||||||||||| |    
T  28988460 tattacattgaaatttgtgtcgtcaacttttcaaaagcataaaaaaagtgttactttcattttaaaatttcctttttttagtttccttaaccagtgcccc 28988361  T
Q  120 ggagcaccggttaacatgac 139  Q
    |  |||  ||||||||||||    
T  28988360 gcggcaatggttaacatgac 28988341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 19187145 - 19187215
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 89  Q
    |||| |||||||||||||||||||||||||| || ||||||||||||||||||  ||||||||||||||||    
T  19187145 aagttttacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttgttttcattttaaaactt 19187215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 39753387 - 39753317
Alignment:
Q  20 agtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 90  Q
    ||||||||||||||| ||||| |||||||| || ||||||||||||||| |||||||||||||||||||||    
T  39753387 agtattacattgaaacttgtgctgtcaactcttcaaaagcataaaaagtattactttcattttaaaacttc 39753317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 38282505 - 38282569
Alignment:
Q  22 tattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 86  Q
    ||||||||| |||||||||||||||||| |||||||  ||||||||||||| |||||||||||||    
T  38282505 tattacattaaaatttgtgttgtcaactctttaaaaatataaaaagtgttattttcattttaaaa 38282569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 14122928 - 14123004
Alignment:
Q  41 ttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcc 117  Q
    ||||||||| || ||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||    
T  14122928 ttgtcaactattcaaaagcatataaagtgttactttcattttaaaacttccttcttttagtttccttaaccagtgcc 14123004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 36603767 - 36603697
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 89  Q
    ||||||| ||||| || |||||||||||||| || |||| |||||||||||| ||||||||||||||||||    
T  36603767 aagtattgcattggaacttgtgttgtcaactcttcaaaaacataaaaagtgtcactttcattttaaaactt 36603697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 1179953 - 1180020
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 86  Q
    |||||||||||||||| || |||||||||||| | |||| |||||||||||||| ||| |||||||||    
T  1179953 aagtattacattgaaacttatgttgtcaacttctaaaaaacataaaaagtgttatttttattttaaaa 1180020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 24233181 - 24233277
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtg 115  Q
    ||||||| ||||| || ||||| ||||||||||| ||||  |||||||||||||||||||| || ||||||||       |||||||||||||||||    
T  24233181 aagtattgcattggaacttgtgctgtcaacttttcaaaaatataaaaagtgttactttcatcttcaaacttcctttttttagtttccttaaccagtg 24233277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 36974127 - 36974030
Alignment:
Q  36 ttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcctcgga-gcaccggttaa 133  Q
    |||||||||||||| || |||| ||||||| |||||| ||||||||||||| ||||       ||||| |||| ||||||||||||| |||||||||||    
T  36974127 ttgtgttgtcaactcttcaaaaacataaaatgtgttattttcattttaaaatttccttttttaagttt-cttatccagtgcctcggaggcaccggttaa 36974030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 45485111 - 45484990
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcct 118  Q
    ||||||| |||||||||||||||||||||||| | |||||||||||| |||||| ||| ||||||||| |||        || ||||||||||||||||     
T  45485111 aagtattgcattgaaatttgtgttgtcaacttctaaaaagcataaaatgtgttatttttattttaaaatttcttttttttaggttccttaaccagtgccc 45485012  T
Q  119 cggagcaccggttaacatgacc 140  Q
    || |||||||||||||||||||    
T  45485011 cgaagcaccggttaacatgacc 45484990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 48611801 - 48611679
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcct 118  Q
    ||||| ||||||| || ||||||||| ||||||| ||||| ||||||||||||||||| |||||||||||  |       |||||||||||||||||||     
T  48611801 aagtactacattgcaacttgtgttgttaacttttcaaaagtataaaaagtgttacttttattttaaaactatctttttttagtttccttaaccagtgccc 48611702  T
Q  119 cggag-caccggttaacatgacc 140  Q
    || || |||||||||||||||||    
T  48611701 cgtagacaccggttaacatgacc 48611679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 32022686 - 32022615
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 90  Q
    |||||||||||||||| ||||  ||||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  32022686 aagtattacattgaaaattgtactgtcaactttttaaaagtataaaaagtattacttttattttaaaacttc 32022615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 19940670 - 19940549
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcct 118  Q
    ||||||| |||||||| || || ||||||||  | ||||||||||||||||||| ||||| |||||||||| |       |||||||||||||||||||     
T  19940670 aagtattgcattgaaacttatgctgtcaactcctcaaaagcataaaaagtgttattttcactttaaaactttc-ctttttagtttccttaaccagtgccc 19940572  T
Q  119 c-ggagcaccggttaacatgacc 140  Q
    | || ||||||||||||||||||    
T  19940571 cgggggcaccggttaacatgacc 19940549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 34663138 - 34663185
Alignment:
Q  42 tgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 89  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  34663138 tgtcaacttttcaaaagtataaaaagtgttactttcattttaaaactt 34663185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 1408629 - 1408694
Alignment:
Q  24 ttacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 89  Q
    |||||||| || |||||||||||||| || |||| |||||||||| ||| ||||||||||||||||    
T  1408629 ttacattggaacttgtgttgtcaactcttcaaaaacataaaaagttttattttcattttaaaactt 1408694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 4941263 - 4941199
Alignment:
Q  22 tattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 86  Q
    |||| |||||||| ||||||||||||||  | ||||||||||||||||||| ||| |||||||||    
T  4941263 tattgcattgaaacttgtgttgtcaactcctcaaaagcataaaaagtgttatttttattttaaaa 4941199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 48768311 - 48768361
Alignment:
Q  22 tattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgtta 72  Q
    ||||| |||| || |||||||||||||| |||||||| |||||||||||||    
T  48768311 tattatattggaacttgtgttgtcaactctttaaaagtataaaaagtgtta 48768361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 40605220 - 40605156
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 86  Q
    |||||||| |||||||||| |||||   |||| | |||| |||||||||||||| |||||||||||||    
T  40605220 aagtattatattgaaatttctgttg---acttctcaaaaacataaaaagtgttaatttcattttaaaa 40605156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 27756475 - 27756542
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 86  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||    
T  27756475 aagtattacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttattttcattttaaaa 27756542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 19328826 - 19328948
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtg-cc 117  Q
    ||||||||||||| || ||||| | |||||| || ||||| |||||||||||||||||||||||||||||||        ||||||||||||||||| ||    
T  19328826 aagtattacattggaacttgtgctatcaactcttcaaaagtataaaaagtgttactttcattttaaaacttcatttttttagtttccttaaccagtgccc 19328925  T
Q  118 tcggagcaccggttaacatgacc 140  Q
     ||| ||||||||||||||||||    
T  19328926 ccggggcaccggttaacatgacc 19328948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 25474715 - 25474657
Alignment:
Q  28 attgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 86  Q
    |||||||||||||||||||||| || ||||||||||||| ||||| |||||||||||||    
T  25474715 attgaaatttgtgttgtcaactcttcaaaagcataaaaaatgttattttcattttaaaa 25474657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 3913657 - 3913729
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttcc 91  Q
    ||||||||| ||| || ||||||||| |||| || ||||| ||||||||||||||||||||||||||| ||||    
T  3913657 aagtattacgttggaacttgtgttgttaactcttcaaaagtataaaaagtgttactttcattttaaaaattcc 3913729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 3427871 - 3427938
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 86  Q
    |||||||  ||||||| |||||||||||||| || |||| |||||||||||||| |||||||||||||    
T  3427871 aagtattgtattgaaacttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaa 3427938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 43159860 - 43159927
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 86  Q
    ||||||| ||||| || ||||||||||||||  | |||| | |||||||||||| |||||||||||||    
T  43159860 aagtattgcattggaacttgtgttgtcaactcctcaaaaacttaaaaagtgttattttcattttaaaa 43159927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 4687425 - 4687364
Alignment:
Q  28 attgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 89  Q
    |||| |||||||| | ||||||| | ||||||||||||||||||| ||| | ||||||||||    
T  4687425 attggaatttgtgctatcaacttctcaaaagcataaaaagtgttatttttactttaaaactt 4687364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 20032924 - 20032989
Alignment:
Q  22 tattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttact-ttcattttaaaa 86  Q
    |||||||||| || |||| ||||||||| || |||| |||||||||||||| | ||||||||||||    
T  20032924 tattacattggaacttgtattgtcaactcttcaaaaacataaaaagtgttattcttcattttaaaa 20032989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 46871305 - 46871361
Alignment:
Q  22 tattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttca 78  Q
    ||||||||||||| ||||||||||||||  |  |||  |||||||||||||||||||    
T  46871305 tattacattgaaacttgtgttgtcaactcctcgaaaatataaaaagtgttactttca 46871361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 9521136 - 9521066
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 89  Q
    |||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  9521136 aagtattacattgaaacttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactt 9521066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 16634424 - 16634544
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcct 118  Q
    ||||||||||||| |||||||| ||||||||||| ||||||||||||| |||| |||  |||||||||||||        ||||||||||| ||||||      
T  16634424 aagtattacattggaatttgtgctgtcaacttttcaaaagcataaaaaatgttgcttctattttaaaacttcattttattagtttccttaatcagtgctc 16634523  T
Q  119 cgga-gcaccggttaacatga 138  Q
    |||| ||||||||||||||||    
T  16634524 cggaggcaccggttaacatga 16634544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 3037421 - 3037485
Alignment:
Q  22 tattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 86  Q
    |||||||||| |||||||||||||||||  ||||||| ||||||||||||||||| |||||||||    
T  3037421 tattacattggaatttgtgttgtcaactccttaaaagtataaaaagtgttactttgattttaaaa 3037485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 27322754 - 27322882
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcct 118  Q
    ||||||| ||||| || ||||| |||||||| || ||||||||||||||| ||||||| |||||  |||||||       |||||||||||||||||||     
T  27322754 aagtattgcattggaacttgtgctgtcaactcttgaaaagcataaaaagtattacttttattttcgaacttcctttttttagtttccttaaccagtgccc 27322853  T
Q  119 cggagcaccggttaacatgacctaataaatt 149  Q
    ||   ||| |||||||||||||  |||||||    
T  27322854 cg--acactggttaacatgaccctataaatt 27322882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 9116472 - 9116404
Alignment:
Q  22 tattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 90  Q
    |||| ||||| || ||||| ||||||||||| ||||| ||| ||||||||||||| |||||||||||||    
T  9116472 tattgcattggaacttgtgctgtcaacttttgaaaagtatacaaagtgttacttttattttaaaacttc 9116404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 15371486 - 15371435
Alignment:
Q  39 tgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 90  Q
    |||||| ||||||||||||| ||||||||||||| ||||| |||||||||||    
T  15371486 tgttgttaactttttaaaaggataaaaagtgttattttcactttaaaacttc 15371435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 6983251 - 6983185
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaa 85  Q
    ||||||||||||| || ||||| ||||||||  | ||||||||||||||||||| ||||| ||||||    
T  6983251 aagtattacattggaacttgtggtgtcaactcctaaaaagcataaaaagtgttattttcactttaaa 6983185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 35501506 - 35501542
Alignment:
Q  103 tccttaaccagtgcctcggagcaccggttaacatgac 139  Q
    ||||||||||||||  |||||||||||||||||||||    
T  35501506 tccttaaccagtgctccggagcaccggttaacatgac 35501542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 6112 - 6230
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcct 118  Q
    ||||||| ||||| ||||| || ||||||||||| |||| ||||||||||||||||||||||||||||||| |       ||||||||||||| |||||     
T  6112 aagtattgcattggaatttatgctgtcaacttttcaaaaacataaaaagtgttactttcattttaaaactttctttttttagtttccttaaccggtgccc 6211  T
Q  119 c-ggagcaccggttaacat 136  Q
    | ||| |||||||||||||    
T  6212 ctggaacaccggttaacat 6230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 30487022 - 30486950
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttcc 91  Q
    ||||||| ||||||||||||||  |||||||||| ||||  ||||||| ||||||||| ||||||||||||||    
T  30487022 aagtattgcattgaaatttgtgccgtcaacttttaaaaaatataaaaaatgttacttttattttaaaacttcc 30486950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 47903956 - 47903887
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 90  Q
    ||||||||||||| |||||||||||||||||  | |||| |||  ||||||||| |||||||||||||||||    
T  47903956 aagtattacattggaatttgtgttgtcaactcctcaaaaacat--aaagtgttattttcattttaaaacttc 47903887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 42469016 - 42468949
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 86  Q
    |||||||| ||||||| ||||| |||| ||| ||||| | |||||||||||||  |||||||||||||    
T  42469016 aagtattaaattgaaacttgtgatgtccactctttaataacataaaaagtgttgttttcattttaaaa 42468949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 37720625 - 37720555
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 89  Q
    ||||||| ||||| ||  |||| ||||||||  | ||||||||||||||||||| ||||| ||||||||||    
T  37720625 aagtattgcattggaacatgtgctgtcaactcctcaaaagcataaaaagtgttattttcactttaaaactt 37720555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 15972206 - 15972134
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttcc 91  Q
    |||||||||||||||| |||||||||||| |  | ||||  ||||||||| ||| ||||| ||||||| ||||    
T  15972206 aagtattacattgaaacttgtgttgtcaaatcctcaaaaatataaaaagtattattttcactttaaaatttcc 15972134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 1290 - 1357
Alignment:
Q  19 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 86  Q
    ||||||| |||||  | ||||||||||||||  | ||||||||||||| ||||| |||||||||||||    
T  1290 aagtattgcattggtacttgtgttgtcaactcatcaaaagcataaaaaatgttattttcattttaaaa 1357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 7246638 - 7246678
Alignment:
Q  100 gtttccttaaccagtgcctcggagcaccggttaacatgacc 140  Q
    |||||||||||||||||| ||||||||  ||||||||||||    
T  7246638 gtttccttaaccagtgccccggagcactagttaacatgacc 7246678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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