View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20943_low_17 (Length: 373)
Name: NF20943_low_17
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_low_17 |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0728 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 11688470 - 11688816
Alignment:
| Q |
18 |
cttgaccgaatacatgcgaaattcatcggtggcatatatgctgtttcttatatcaggaattgatggatcaattggatattttttcttttctggtgtagga |
117 |
Q |
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| T |
11688470 |
cttgaccgaatacatgcgaaattcatctgtggcatatatgctgtttcttatatcaggaattgatggatcaattggatattttttcttttctggtgtagaa |
11688569 |
T |
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| Q |
118 |
ctaacagctgtgtcggtcaactttggagccacgggagaggatggagactccttttcaaaagatgacagcggaagcgaaccatcatcaacagactcatcag |
217 |
Q |
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| T |
11688570 |
ctaacagctgtgtcggtcaactttggagccacgggagaggatggagaccccttttcaaaagatgacagcggaagcgaaccatcatcaacagactcatcag |
11688669 |
T |
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| Q |
218 |
cagcactaaccgtaccacttgagagaagttgttcaaggcttcttttcaccacttcgagcttatggggaacaacaataggaagaacaataacatccattgg |
317 |
Q |
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| T |
11688670 |
cagcact---------atttgagagaagttgttcaagacttcttttcacgacttcgagcttatggggaacaacaataggaagaacaataacatccattgg |
11688760 |
T |
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| Q |
318 |
acggttcccattagcatcgacacaatagatgtcagcgccagctgataaaagcaatt |
373 |
Q |
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| T |
11688761 |
acggttcccattagcatcgacacaatagatgtcagcgccagctgataaaagcaatt |
11688816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 9314859 - 9314998
Alignment:
| Q |
25 |
gaatacatgcgaaattcatcggtggcatatatgctgtttcttatatcaggaattgatggatcaattggatattttttcttttctggtgtaggactaacag |
124 |
Q |
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| T |
9314859 |
gaatacatgcggaattcatctgtggcatacatgctgttttttatgtcaggaagagatgggtcaactggatactctttcttttctgatgtagaattaacag |
9314958 |
T |
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| Q |
125 |
ctgtgtcggtcaactttggagccacgggagaggatggaga |
164 |
Q |
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| T |
9314959 |
ctgtatctgtaaacttgggagccacaggagaggatggaga |
9314998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 237 - 373
Target Start/End: Original strand, 9315101 - 9315237
Alignment:
| Q |
237 |
tgagagaagttgttcaaggcttcttttcaccacttcgagcttatggggaacaacaataggaagaacaataacatccattggacggttcccattagcatcg |
336 |
Q |
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| T |
9315101 |
tgagagaagttcttcaagaattgttttaacaccttcgagcttatgaggaacaacaataggaacaacgataacatccacagggcgtttcccattagcatcc |
9315200 |
T |
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| Q |
337 |
acacaatagatgtcagcgccagctgataaaagcaatt |
373 |
Q |
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| T |
9315201 |
acagaattgatatcagcaccagctgataaaagcaatt |
9315237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 11754191 - 11754279
Alignment:
| Q |
86 |
caattggatattttttcttttctggtgtaggactaacagctgtgtcggtcaactttggagccacgggagaggatggagactccttttca |
174 |
Q |
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| T |
11754191 |
caattggatattctttcttttctgatgcagaattaacagctgtgtcggtaaactttggagccacaggagaggatggagattcattttca |
11754279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 4586 - 4520
Alignment:
| Q |
29 |
acatgcgaaattcatcggtggcatatatgctgtttcttatatcaggaattgatggatcaattggata |
95 |
Q |
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| T |
4586 |
acatccgaaattcatcgcttgcatacatgctgttttttataccaggaaatgatggatcaactggata |
4520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 19409020 - 19408954
Alignment:
| Q |
29 |
acatgcgaaattcatcggtggcatatatgctgtttcttatatcaggaattgatggatcaattggata |
95 |
Q |
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| T |
19409020 |
acatccgaaattcatcgcttgcatacatgctgttttttataccaggaaatgatggatcaactggata |
19408954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 36456232 - 36456153
Alignment:
| Q |
25 |
gaatacatgcgaaattcatcggtggcatatatgctgtttcttatatcaggaattgatggatcaattggatattttttctt |
104 |
Q |
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| T |
36456232 |
gaatacattcgaaattcatcagttgagtatatgctgtttttgatatcaggaagggatggatcaacaggatattctttctt |
36456153 |
T |
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