View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20943_low_20 (Length: 346)
Name: NF20943_low_20
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 34397484 - 34397155
Alignment:
| Q |
1 |
ataaaatctgagaagcacttactaaaagaagctgcttcttaagtatttcccaattccctcctctagcagcagcatgaatggccctattcaatatctccct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34397484 |
ataaaatctgagaagcacttactaaaagaagctgcttctttagtatttcccaattccctcctctagcagcagcatgaatggccctattcaatatctccct |
34397385 |
T |
|
| Q |
101 |
cttgaaaactccaccaccaacaccttcatccaattcaacaataccacaatcttttcctaagagagcaaaatcaagaatcatgttgaatacctcagaattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34397384 |
cttgaaaactccaccaccaacaccttcatccaattcaacaataccacaatcttttcctaagagagcaaaatcaagaatcatgttgaatacctcagaattc |
34397285 |
T |
|
| Q |
201 |
ttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaagaatctcttctcaacaattcataaacaaactcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34397284 |
ttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaagaatctcttctcaacaattcataaacaaactcca |
34397185 |
T |
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| Q |
301 |
aatcaccagcagaagcagcagtgtacaaaa |
330 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34397184 |
aatcaccagcagaagcagcagtgtacaaaa |
34397155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 189 - 325
Target Start/End: Original strand, 38831511 - 38831647
Alignment:
| Q |
189 |
acctcagaattcttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaagaatctcttctcaacaattcat |
288 |
Q |
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||||||||| | ||||| |||||||||||||| || |||||||||||||||||||| ||||| |||||||| | |||| ||||| |||||||||||| |
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| T |
38831511 |
acctcagaacttttacttctagctgcagcatacaaaatatcagtaacaccatactcaccttctccaaaaacaagagaagattctctcctcaacaattcac |
38831610 |
T |
|
| Q |
289 |
aaacaaactccaaatcaccagcagaagcagcagtgta |
325 |
Q |
| |
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||||||| |||| ||||||||| |||||||||||||| |
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| T |
38831611 |
aaacaaattccatatcaccagctgaagcagcagtgta |
38831647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 38831382 - 38831418
Alignment:
| Q |
42 |
agtatttcccaattccctcctctagcagcagcatgaa |
78 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||||| |
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| T |
38831382 |
agtatctcccaattcccacctctagcagcagcatgaa |
38831418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 7997069 - 7997140
Alignment:
| Q |
196 |
aattcttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaag |
267 |
Q |
| |
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||||||| || ||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
7997069 |
aattcttgcttctagcagcagcataaagtatatcagtaacaccatattctccttcaccgaaaaccaacaaag |
7997140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 8021733 - 8021662
Alignment:
| Q |
196 |
aattcttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaag |
267 |
Q |
| |
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||||||| || ||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
8021733 |
aattcttgcttctagcagcagcataaagtatatcagtaacaccatattctccttcaccgaaaaccaacaaag |
8021662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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