View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20943_low_23 (Length: 319)

Name: NF20943_low_23
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20943_low_23
NF20943_low_23
[»] chr5 (27 HSPs)
chr5 (13-303)||(3639760-3640052)
chr5 (42-203)||(19456229-19456389)
chr5 (42-204)||(15641122-15641285)
chr5 (42-203)||(27498749-27498911)
chr5 (42-203)||(38684225-38684386)
chr5 (42-203)||(8484679-8484841)
chr5 (42-203)||(30485845-30486007)
chr5 (44-203)||(18207226-18207386)
chr5 (42-148)||(25586949-25587054)
chr5 (42-148)||(37495064-37495169)
chr5 (42-196)||(32059465-32059620)
chr5 (105-206)||(7085641-7085743)
chr5 (42-183)||(19145450-19145591)
chr5 (155-206)||(21236377-21236428)
chr5 (42-92)||(930615-930665)
chr5 (42-203)||(11926519-11926682)
chr5 (42-148)||(12398523-12398628)
chr5 (53-203)||(27487572-27487724)
chr5 (154-203)||(5067391-5067440)
chr5 (155-203)||(22693066-22693114)
chr5 (156-203)||(37495186-37495233)
chr5 (42-203)||(33709521-33709681)
chr5 (157-203)||(41351122-41351168)
chr5 (105-203)||(9659329-9659428)
chr5 (105-203)||(35425093-35425192)
chr5 (155-199)||(22392819-22392863)
chr5 (155-203)||(38630997-38631045)
[»] chr6 (15 HSPs)
chr6 (42-203)||(34147363-34147525)
chr6 (42-203)||(34159979-34160141)
chr6 (42-206)||(11448888-11449053)
chr6 (42-203)||(15360116-15360278)
chr6 (42-203)||(28672084-28672246)
chr6 (42-148)||(9690713-9690818)
chr6 (78-203)||(3222654-3222779)
chr6 (42-203)||(9238992-9239154)
chr6 (42-213)||(9208269-9208441)
chr6 (78-199)||(12390478-12390600)
chr6 (105-206)||(21148526-21148627)
chr6 (48-199)||(654168-654320)
chr6 (42-203)||(9843955-9844117)
chr6 (42-203)||(21982339-21982500)
chr6 (42-148)||(12591654-12591759)
[»] chr4 (24 HSPs)
chr4 (42-203)||(40058870-40059032)
chr4 (42-203)||(34844776-34844938)
chr4 (42-203)||(27528813-27528975)
chr4 (42-203)||(52983636-52983798)
chr4 (42-202)||(34835546-34835707)
chr4 (78-203)||(5609220-5609346)
chr4 (42-203)||(32986214-32986376)
chr4 (42-203)||(33696297-33696459)
chr4 (76-216)||(32990486-32990627)
chr4 (42-203)||(19660550-19660712)
chr4 (83-203)||(20566408-20566529)
chr4 (42-148)||(25852231-25852336)
chr4 (42-148)||(33992643-33992748)
chr4 (105-196)||(53787082-53787175)
chr4 (42-206)||(46714409-46714575)
chr4 (42-148)||(13771557-13771663)
chr4 (42-203)||(54127360-54127522)
chr4 (155-202)||(9978528-9978575)
chr4 (42-133)||(43719154-43719245)
chr4 (85-206)||(44343574-44343696)
chr4 (42-216)||(49287875-49288049)
chr4 (42-128)||(1985853-1985939)
chr4 (42-148)||(13584329-13584434)
chr4 (42-148)||(32942387-32942492)
[»] chr3 (36 HSPs)
chr3 (42-203)||(18176905-18177067)
chr3 (42-203)||(15566518-15566679)
chr3 (42-204)||(53233927-53234090)
chr3 (42-203)||(30257641-30257803)
chr3 (42-203)||(26174130-26174292)
chr3 (42-203)||(35492928-35493090)
chr3 (42-203)||(40133467-40133629)
chr3 (42-206)||(8456165-8456330)
chr3 (42-203)||(52821654-52821815)
chr3 (42-203)||(53424195-53424356)
chr3 (42-204)||(45529771-45529934)
chr3 (105-206)||(1692914-1693015)
chr3 (43-183)||(45272454-45272595)
chr3 (42-148)||(26108309-26108414)
chr3 (42-148)||(30807228-30807333)
chr3 (42-148)||(40940842-40940947)
chr3 (42-183)||(25289752-25289894)
chr3 (42-203)||(46576365-46576527)
chr3 (42-203)||(49258280-49258442)
chr3 (43-204)||(51532807-51532969)
chr3 (83-203)||(8097297-8097418)
chr3 (27-203)||(10190760-10190936)
chr3 (42-203)||(21362960-21363122)
chr3 (42-128)||(49167073-49167159)
chr3 (42-203)||(25379778-25379940)
chr3 (42-203)||(34492593-34492755)
chr3 (155-203)||(53848452-53848500)
chr3 (155-206)||(29915285-29915336)
chr3 (155-206)||(29964438-29964489)
chr3 (47-203)||(39041870-39042027)
chr3 (157-199)||(17579157-17579199)
chr3 (154-203)||(24165733-24165782)
chr3 (158-203)||(24407395-24407440)
chr3 (155-203)||(8958053-8958101)
chr3 (155-203)||(32151555-32151603)
chr3 (155-203)||(48105008-48105056)
[»] chr7 (29 HSPs)
chr7 (42-203)||(7175880-7176042)
chr7 (42-203)||(7275298-7275460)
chr7 (42-206)||(27704023-27704187)
chr7 (42-203)||(22119909-22120071)
chr7 (42-203)||(40542928-40543090)
chr7 (42-204)||(10091209-10091372)
chr7 (42-203)||(2751292-2751454)
chr7 (42-203)||(21835172-21835334)
chr7 (42-203)||(11997870-11998032)
chr7 (42-202)||(22703507-22703668)
chr7 (42-200)||(2103076-2103234)
chr7 (78-203)||(654723-654848)
chr7 (42-203)||(28089837-28090002)
chr7 (42-206)||(19421252-19421417)
chr7 (155-203)||(27312287-27312335)
chr7 (42-128)||(42814885-42814971)
chr7 (42-203)||(17196968-17197130)
chr7 (42-146)||(17212074-17212177)
chr7 (42-183)||(23012546-23012688)
chr7 (155-203)||(31197725-31197773)
chr7 (42-202)||(42913532-42913693)
chr7 (42-148)||(9718062-9718167)
chr7 (42-148)||(21217908-21218013)
chr7 (42-92)||(47380919-47380969)
chr7 (105-203)||(3851841-3851940)
chr7 (158-203)||(31712920-31712965)
chr7 (155-183)||(8943439-8943467)
chr7 (42-146)||(23330816-23330919)
chr7 (155-203)||(25333538-25333586)
[»] chr2 (26 HSPs)
chr2 (42-148)||(14946796-14946902)
chr2 (57-203)||(15037991-15038138)
chr2 (42-203)||(44946071-44946233)
chr2 (42-203)||(30466848-30467010)
chr2 (42-199)||(24196021-24196177)
chr2 (99-203)||(34516432-34516536)
chr2 (57-204)||(17324798-17324945)
chr2 (105-206)||(35171880-35171982)
chr2 (78-206)||(36390584-36390712)
chr2 (42-203)||(13266507-13266668)
chr2 (42-148)||(27290605-27290710)
chr2 (42-203)||(11941228-11941390)
chr2 (42-148)||(10582065-10582170)
chr2 (42-203)||(43374348-43374505)
chr2 (42-203)||(33827591-33827753)
chr2 (42-182)||(5394034-5394175)
chr2 (43-133)||(40591201-40591290)
chr2 (42-196)||(8192377-8192531)
chr2 (44-133)||(28194223-28194311)
chr2 (155-199)||(2140508-2140552)
chr2 (155-203)||(18976473-18976521)
chr2 (155-203)||(19054157-19054205)
chr2 (155-203)||(25293290-25293338)
chr2 (155-203)||(36242330-36242378)
chr2 (155-203)||(41329973-41330021)
chr2 (159-203)||(44610174-44610218)
[»] chr1 (21 HSPs)
chr1 (42-203)||(4621255-4621417)
chr1 (42-206)||(7766742-7766907)
chr1 (42-183)||(8077664-8077806)
chr1 (42-203)||(15059420-15059582)
chr1 (42-203)||(24674410-24674572)
chr1 (42-203)||(24122040-24122202)
chr1 (42-202)||(1378915-1379075)
chr1 (44-203)||(9500373-9500533)
chr1 (42-142)||(1138596-1138695)
chr1 (42-183)||(32729562-32729703)
chr1 (105-203)||(30677256-30677355)
chr1 (42-203)||(27454882-27455046)
chr1 (155-206)||(23734248-23734299)
chr1 (155-206)||(23741440-23741491)
chr1 (34-128)||(45859137-45859230)
chr1 (68-120)||(12993946-12993998)
chr1 (78-206)||(8254767-8254896)
chr1 (42-148)||(46607827-46607932)
chr1 (42-115)||(24216995-24217068)
chr1 (155-203)||(36155906-36155954)
chr1 (155-203)||(48699890-48699938)
[»] chr8 (20 HSPs)
chr8 (42-203)||(2618207-2618369)
chr8 (42-203)||(4718666-4718828)
chr8 (42-203)||(34237673-34237835)
chr8 (42-203)||(39349277-39349439)
chr8 (42-203)||(3734641-3734803)
chr8 (42-203)||(21603251-21603413)
chr8 (117-199)||(2166793-2166875)
chr8 (42-203)||(28193495-28193657)
chr8 (42-148)||(27746410-27746515)
chr8 (44-203)||(8765544-8765704)
chr8 (83-202)||(21667612-21667731)
chr8 (78-203)||(15259424-15259550)
chr8 (42-203)||(14632975-14633137)
chr8 (78-203)||(6953026-6953151)
chr8 (155-203)||(2639429-2639477)
chr8 (105-148)||(28964117-28964159)
chr8 (42-196)||(36848775-36848929)
chr8 (155-203)||(18128648-18128696)
chr8 (155-203)||(32879414-32879462)
chr8 (42-203)||(34610705-34610867)
[»] scaffold0019 (1 HSPs)
scaffold0019 (44-203)||(161828-161988)
[»] scaffold0576 (1 HSPs)
scaffold0576 (42-203)||(5100-5262)
[»] scaffold0623 (1 HSPs)
scaffold0623 (42-204)||(1073-1236)
[»] scaffold0366 (2 HSPs)
scaffold0366 (42-204)||(9316-9479)
scaffold0366 (42-204)||(12018-12180)
[»] scaffold0016 (1 HSPs)
scaffold0016 (105-204)||(32368-32468)
[»] scaffold0070 (1 HSPs)
scaffold0070 (78-203)||(40378-40503)
[»] scaffold0459 (1 HSPs)
scaffold0459 (42-204)||(10711-10873)
[»] scaffold0217 (1 HSPs)
scaffold0217 (43-203)||(7327-7488)
[»] scaffold0028 (1 HSPs)
scaffold0028 (42-139)||(27793-27890)
[»] scaffold0102 (1 HSPs)
scaffold0102 (155-203)||(39223-39271)
[»] scaffold0026 (1 HSPs)
scaffold0026 (42-182)||(97405-97546)
[»] scaffold0199 (1 HSPs)
scaffold0199 (42-115)||(8514-8587)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 3639760 - 3640052
Alignment:
Q  13 aatattgtgagtattttaactcatttggaggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcgg 112  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3639760 aatattgtgagtattttaactcatttgg-ggttggcttgagattttggagtttgctcttctccaggtcttaggttcgattatctttggtggtaatttcgg 3639858  T
Q  113 tggactaagtccatacggagctatgctctggctttagctcagccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttgaataaaata 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||| |||||| |||||||||||||||| ||||    
T  3639859 tggactaagtccatacggagctatgctctggctttagctcagccccgcaagtggacagtgagattgatcccctcagattagtcgattcttgaatagaata 3639958  T
Q  213 ctgatttt---gnnnnnnntattgtgagtattttgttgcaacgactgttgcaattttttagtgcagtaattgtgttttaaccaagaaacaagtt 303  Q
    | ||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3639959 ccgattttaaaaaaaaaaatattgtgagtattttgttgcaacgactgttgcaattttttagtgcagtaattgtattttaaccaagaaacaagtt 3640052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 19456389 - 19456229
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| |||||||||   || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  19456389 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatcc-ctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 19456292  T
Q  142 ggctttag-ctcagccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||  |   ||||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  19456291 ggctttaaacggggccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 19456229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 15641285 - 15641122
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || ||| |  ||||||||||| |||||||||||| ||||| ||||||    
T  15641285 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggagccaatttcggtgggctaagtccatacagagct-tgctct 15641187  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttga 204  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| |||||||||||||    
T  15641186 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttga 15641122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 27498911 - 27498749
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    ||||||||||  || ||||||||||||| |||  | |||| ||||||||||  || |||||  ||||||||||| ||||||||||||  |||| ||||||    
T  27498911 ggttggcttggaatcttggagtttgctcctctagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacatagct-tgctct 27498813  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  27498812 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 27498749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 38684225 - 38684386
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    ||||| |||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  38684225 ggttgacttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 38684323  T
Q  142 ggcttt-agctcagccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||| | |    ||||||||||| |||||| |||||||||| || ||| ||||||||||||    
T  38684324 ggctttaaacgggcccccgcaagtgagcggtgggattggtcccctcggattagtcgattcttg 38684386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 8484841 - 8484679
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||| ||||  || |||||  ||||||||||| |||||| ||||| ||||| ||||||    
T  8484841 ggttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattccctctggtgccaatttcggtgggctaagttcatacagagct-tgctct 8484743  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  8484742 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 8484679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 30485845 - 30486007
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| |    | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  30485845 ggttggcttgggatcttggagtttgctccttcagaggtctcaggttcgattcactctggtgtcaatttcggtgggctaagtccatacagagct-tgctct 30485943  T
Q  142 ggctttagctca--gccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||    |   |||||||||||||||||| |||||||||| || ||| |||| |||||||    
T  30485944 ggctttaaacgatgcccccgcaagtgggcggtgggattggtcccctcggattagtcaattcttg 30486007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 18207226 - 18207386
Alignment:
Q  44 ttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctgg 143  Q
    |||| ||| ||| ||||||||||||| ||   | |||| ||||||||||  ||  ||||  ||||||||||| |||||||||||| ||||| || |||||    
T  18207226 ttggtttgggatcttggagtttgctcctccagaggtctcaggttcgattccctccggtgccaatttcggtgggctaagtccatacagagct-tgttctgg 18207324  T
Q  144 ctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||    ||  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  18207325 ctttaaacgaggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 18207386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 25586949 - 25587054
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  25586949 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatttcctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 25587047  T
Q  142 ggcttta 148  Q
    |||||||    
T  25587048 ggcttta 25587054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 37495064 - 37495169
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||||||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||| ||||| |||||||||||| ||||| ||||||    
T  37495064 ggttggcttgagatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaattttggtgggctaagtccatacagagct-tgctct 37495162  T
Q  142 ggcttta 148  Q
    |||||||    
T  37495163 ggcttta 37495169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 32059620 - 32059465
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||   | |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  32059620 ggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccttctggtgccaatttcggtgggctaagtccatacagagct-tgctct 32059522  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcg 196  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| |||||    
T  32059521 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcg 32059465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 206
Target Start/End: Complemental strand, 7085743 - 7085641
Alignment:
Q  105 aatttcggtggactaagtccatacggagctatgctctggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattctt 202  Q
    ||||||||||| |||||||||||| ||||| ||||||| |||||     |  |||||||||||||||||| |||||||||| || ||| |||||||||||    
T  7085743 aatttcggtgggctaagtccatacagagct-tgctctgactttaaacggggtccccgcaagtgggcggtgggattggtcccctcggattagtcgattctt 7085645  T
Q  203 gaat 206  Q
    ||||    
T  7085644 gaat 7085641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 183
Target Start/End: Complemental strand, 19145591 - 19145450
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    ||||| |||| ||| ||||||| ||||| |||| | ||||  |||||||||  || |||||  ||||||||||| | |||||||||| ||||| ||||||    
T  19145591 ggttgacttgggatcttggagtatgctcctctcaaggtctccggttcgattccctctggtgccaatttcggtgggc-aagtccatacagagctttgctct 19145493  T
Q  142 ggcttta---gctcagccccgcaagtgggcggtgtgattggtccc 183  Q
    |||||||   | ||  |||||||||||||||||| ||||||||||    
T  19145492 ggctttaaatggtc--ccccgcaagtgggcggtgggattggtccc 19145450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 21236428 - 21236377
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttgaat 206  Q
    |||||||||||||||||| |||| ||||| |||||| |||||||||||||||    
T  21236428 ccccgcaagtgggcggtgggattagtcccctcagattagtcgattcttgaat 21236377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 930665 - 930615
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgatt 92  Q
    ||||||||||||||||| |||||||||| |||| |||||| ||||||||||    
T  930665 ggttggcttgagattttagagtttgctcctctcaaagtctcaggttcgatt 930615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 11926682 - 11926519
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||| ||| ||| ||||||||||||| ||   | |||| ||||| ||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  11926682 ggttggtttgggatcttggagtttgctcctccagaggtctcaggttagattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 11926584  T
Q  142 ggcttta---gctcagccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||   |     ||||||||||||| |||| |||||||||| || ||| ||||||||||||    
T  11926583 ggctttaaacggggccccccgcaagtgggtggtgggattggtcccctcggattagtcgattcttg 11926519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 12398628 - 12398523
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||| ||||| ||||| ||||||    
T  12398628 ggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctatggtgtcaatttcggtggcctaagttcatacagagct-tgctct 12398530  T
Q  142 ggcttta 148  Q
    |||||||    
T  12398529 ggcttta 12398523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 203
Target Start/End: Complemental strand, 27487724 - 27487572
Alignment:
Q  53 gattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctttag-ct 151  Q
    ||||||||||||||||||||   | |||| ||||| |||    |||||||  |||||||||||||||||||||||| ||||| |||||| ||||||  |     
T  27487724 gattttggagtttgctcttccagaggtctcaggtttgatcccatttggtgccaatttcggtggactaagtccatacagagct-tgctctagctttaaacg 27487626  T
Q  152 cagcccc--gcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
      | |||  |||||||||||||| |||||||||| || ||| ||||||||||||    
T  27487625 ggggcccttgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 27487572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 5067391 - 5067440
Alignment:
Q  154 gccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    ||||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  5067391 gccccgcaagtgggcggtgggattggtcccctctgattagtcgattcttg 5067440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 22693066 - 22693114
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  22693066 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 22693114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 37495186 - 37495233
Alignment:
Q  156 cccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    ||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  37495186 cccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 37495233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 33709681 - 33709521
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| | ||||||||  || |||||  ||||||||||| |||||||||||| |||    |||||    
T  33709681 ggttggcttgggatcttggagtttgctcctccagaggtctcaagttcgattccctctggtgccaatttcggtgggctaagtccatacagaga---gctct 33709585  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||| ||||||||||||| |||||||||| || ||| ||||||||||||    
T  33709584 ggctttaaacgggacccccacaagtgggcggtgggattggtcccctcggattagtcgattcttg 33709521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 41351168 - 41351122
Alignment:
Q  157 ccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||||||||||| |||||||||| || ||| ||||||||||||    
T  41351168 ccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 41351122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 9659428 - 9659329
Alignment:
Q  105 aatttcggtggactaagtccatacggagctatgctctggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattctt 202  Q
    ||||||||||| ||||||||||||  |||| |||||||||||||  |  |  |||||||||||| ||||| |||||||||| || ||| ||| |||||||    
T  9659428 aatttcggtgggctaagtccatacacagct-tgctctggctttaaatgggccccccgcaagtggacggtgggattggtcccttcggattagttgattctt 9659330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 35425093 - 35425192
Alignment:
Q  105 aatttcggtggactaagtccatacggagctatgctctggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattctt 202  Q
    ||||||||||| |||||||||||| |||||  ||||||||||||     |  |||||||||||||||||| |||||||||  || ||| |||||||||||    
T  35425093 aatttcggtgggctaagtccatacagagctc-gctctggctttaaacggggcccccgcaagtgggcggtgggattggtcctctcggattagtcgattctt 35425191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 22392819 - 22392863
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgatt 199  Q
    ||||||||||||||||||  ||||||||| |||||| ||||||||    
T  22392819 ccccgcaagtgggcggtggaattggtcccctcagattagtcgatt 22392863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 38631045 - 38630997
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||||||||||||| |||||||||| || ||| | ||||||||||    
T  38631045 ccccgcaagtgggcggtgggattggtcccctcggattaatcgattcttg 38630997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 34147363 - 34147525
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||||||   |||||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  34147363 ggttggcttgggatcttggagtttgctcttccagaagtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 34147461  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  34147462 ggctttaaacgggccccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 34147525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 34159979 - 34160141
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||||||   |||||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  34159979 ggttggcttgggatcttggagtttgctcttccagaagtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 34160077  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  34160078 ggctttaaacgggccccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 34160141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 206
Target Start/End: Original strand, 11448888 - 11449053
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| |||||||||| ||| |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  11448888 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 11448986  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttgaat 206  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| |||||||||||||||    
T  11448987 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttgaat 11449053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 15360278 - 15360116
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  15360278 ggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 15360180  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||| ||||||||| |||||||||| || ||| ||||||||||||    
T  15360179 ggctttaaacggggcccccgcaaatgggcggtgggattggtcccctcggattagtcgattcttg 15360116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 28672084 - 28672246
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    ||||| |||||||| ||||||||||||| |||  | |||||||||||||||  || |||||  ||||| ||||| |||||||||||| ||||| || | |    
T  28672084 ggttgacttgagatcttggagtttgctcctctagaggtcttaggttcgattccctctggtgtcaattttggtgggctaagtccatacagagct-tgtttt 28672182  T
Q  142 ggctttagctcagccc--cgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     ||||  ||||||||||||||| |||||||||| || ||| ||||||||||||    
T  28672183 ggctttaaacgggcccctcgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 28672246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 9690818 - 9690713
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctt-tggtggtaatttcggtggactaagtccatacggagctatgctc 140  Q
    |||||| ||||||||||||||||||||||||   | ||||||||||||||| |||| | |||  ||||||||||| |||||||||||| ||||| |||||    
T  9690818 ggttggtttgagattttggagtttgctcttccagaggtcttaggttcgatt-tcttctagtgtcaatttcggtgggctaagtccatacagagct-tgctc 9690721  T
Q  141 tggcttta 148  Q
    ||||||||    
T  9690720 tggcttta 9690713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 3222779 - 3222654
Alignment:
Q  78 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctttag-ctcagccccgcaagtgggcggtgtgat 176  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||| |||||  |   ||||||||||||||||||| |||    
T  3222779 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctgtctttaaacggggccccgcaagtgggcggtgggat 3222681  T
Q  177 tggtcccatcagatcagtcgattcttg 203  Q
    ||||||| || ||| ||||||||||||    
T  3222680 tggtcccctcggattagtcgattcttg 3222654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 9238992 - 9239154
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  |||||||||||  ||||||||||  ||||| |||| |    
T  9238992 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggttaagtccatatagagct-tgcttt 9239090  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||  |  |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  9239091 ggctttaaatggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 9239154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 213
Target Start/End: Original strand, 9208269 - 9208441
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||| ||| ||| ||||||||||||| |||| | |||| ||||||||||  |  |||||  ||||||||||| | |||||||||| ||||  |||| |    
T  9208269 ggttggattgggatcttggagtttgctcctctcaaggtctcaggttcgattccccctggtgccaatttcggtgggc-aagtccatacagagccttgcttt 9208367  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttgaataaaatac 213  Q
    |||||||  |  |  |||||||||||||||||| |||||||| | |||||  |||||||||||| || ||||||    
T  9208368 ggctttaaatggggcccccgcaagtgggcggtgggattggtctcctcagaatagtcgattcttggatcaaatac 9208441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 199
Target Start/End: Original strand, 12390478 - 12390600
Alignment:
Q  78 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctttagctcag---ccccgcaagtgggcggtgtg 174  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||   |||   |||||||||||||||||| |    
T  12390478 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta-aacagggcccccgcaagtgggcggtggg 12390575  T
Q  175 attggtcccatcagatcagtcgatt 199  Q
    ||||||||| || ||| ||||||||    
T  12390576 attggtcccctcggattagtcgatt 12390600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 206
Target Start/End: Complemental strand, 21148627 - 21148526
Alignment:
Q  105 aatttcggtggactaagtccatacggagctatgctctggctttag-ctcagccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    ||||||| ||| |||||||||||| ||||| ||||||| |||||  |   ||||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  21148627 aatttcgatgggctaagtccatacagagct-tgctctgactttaaacggggccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 21148529  T
Q  204 aat 206  Q
    |||    
T  21148528 aat 21148526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 654320 - 654168
Alignment:
Q  48 cttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttt 147  Q
    |||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||||||||    
T  654320 cttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttt 654222  T
Q  148 -agctcagc-cccgcaagtgggcggtgtgattggtcccatcagatcagtcgatt 199  Q
     | |   || ||||||||||||||||| |||||||||| || ||| ||||||||    
T  654221 aaacggggctcccgcaagtgggcggtgggattggtcccctcggattagtcgatt 654168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 9843955 - 9844117
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| |||  | |||| |||||||| |  || |||||  ||||| |||||  ||||||||||| ||||| || |||    
T  9843955 ggttggcttgggatcttggagtttgctcctctagaggtctcaggttcgacttcctctggtgtcaattttggtgggttaagtccatacagagct-tgttct 9844053  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||| ||||||||||||| |||||||||| || ||| ||||||||||||    
T  9844054 ggctttaaacggggccccctcaagtgggcggtgagattggtcccttcggattagtcgattcttg 9844117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 21982500 - 21982339
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||| ||||||||| ||   | |||| ||||||||||  |  |||||  |||||| |||| |||||||||||| ||||| ||||||    
T  21982500 ggttggcttgggatcttgaagtttgctcctccagaggtctgaggttcgattcccgatggtgccaatttcagtgggctaagtccatacagagct-tgctct 21982402  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  21982401 ggctttaaacggggcccccgcaagtgggcggtgggattggtccc-tcggattagtcgattcttg 21982339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 12591654 - 12591759
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || | |||  |||||| |||| |||||||||||| ||||| ||||||    
T  12591654 ggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctcgtgccaatttcagtgggctaagtccatacagagct-tgctct 12591752  T
Q  142 ggcttta 148  Q
    |||||||    
T  12591753 ggcttta 12591759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 40059032 - 40058870
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| |||  | |||| |||||||||| ||| |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  40059032 ggttggcttgggatcttggagtttgctcctctagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 40058934  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  40058933 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 40058870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 34844938 - 34844776
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||| ||||||||| ||||||||||||| ||   | |||| |||||||||| ||| |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  34844938 ggtttgcttgagatcttggagtttgctcctccagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 34844840  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  34844839 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 34844776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 27528975 - 27528813
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  27528975 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 27528877  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  27528876 ggctttatacggggcccccgcaagtgggcggtgagattggtcccctcggattagtcgattcttg 27528813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 52983636 - 52983798
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||||||| ||||||||||||| ||   | |||| ||||||||||  || |||||  |||||| |||| |||||||||||| ||||| ||||||    
T  52983636 ggttggcttgagatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcagtgggctaagtccatacagagct-tgctct 52983734  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  52983735 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 52983798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 42 - 202
Target Start/End: Original strand, 34835546 - 34835707
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| || |||||||||| |||  | |||| | ||||||||  || |||||  ||||||||||| ||||||||||||||||||||| |||    
T  34835546 ggttggcttgggatcttagagtttgctcctcttaaggtctcatgttcgattccctctggtgtcaatttcggtgggctaagtccatacggagctatg-tct 34835644  T
Q  142 ggctttagctcag---ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattctt 202  Q
    |||||||  |  |   |||||||||||||| ||| |||||||||| || ||| |||||||||||    
T  34835645 ggctttaaatagggccccccgcaagtgggc-gtgagattggtcccctcggattagtcgattctt 34835707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 5609346 - 5609220
Alignment:
Q  78 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctttagctcag--ccccgcaagtgggcggtgtga 175  Q
    |||| |||||||||| ||| |||||  ||||||||||| |||||||||||| ||||| |||||||||||||  |  |  |||||||||||| ||||| ||    
T  5609346 gtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaatggggcccccgcaagtggacggtggga 5609248  T
Q  176 ttggtcccatcagatcagtcgattcttg 203  Q
    ||| |||| || ||| ||||||||||||    
T  5609247 ttgatcccctcggattagtcgattcttg 5609220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 32986214 - 32986376
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| |||||| |||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  32986214 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcaattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 32986312  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    | |||||  |  |  |||||||||||||||||| |||||||||| || ||  ||||||||||||    
T  32986313 gactttaaatggggcccccgcaagtgggcggtgggattggtcccctcggaatagtcgattcttg 32986376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 33696459 - 33696297
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| |||||| |||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  33696459 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcaattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 33696361  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||  |  |  |||||||||||||||||| |||||||||  || ||| |||| |||||||    
T  33696360 ggctttaaatggggcccccgcaagtgggcggtgagattggtcctctcggattagtcaattcttg 33696297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 216
Target Start/End: Original strand, 32990486 - 32990627
Alignment:
Q  76 aagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctttagctcag--ccccgcaagtgggcggtgt 173  Q
    |||||| ||||||||||  |||| |||  ||||||||||| |||||||||||| ||||| |||||||||||||     |  ||||||||||||||||||     
T  32990486 aagtctcaggttcgattccctttagtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgggcggtgg 32990584  T
Q  174 gattggtcccatcagatcagtcgattcttgaataaaatactga 216  Q
    |||||||||| || ||  |||||||||||| ||  ||||||||    
T  32990585 gattggtcccctcggactagtcgattcttggatcgaatactga 32990627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 19660712 - 19660550
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||| |||| ||| || ||  |||||||||||  ||||||||||| ||||| ||||||    
T  19660712 ggttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattctctctgatgcaaatttcggtgggataagtccatacagagct-tgctct 19660614  T
Q  142 ggctttagctcag---ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||   |||   |||||||||||||||||| ||||| |||| || ||| ||||||||||||    
T  19660613 ggcttta-aacagggcccccgcaagtgggcggtgggattgatcccctcggattagtcgattcttg 19660550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 20566408 - 20566529
Alignment:
Q  83 aggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctttag-ctcagcccc-gcaagtgggcggtgtgattggt 180  Q
    ||||||||||  || |||||  ||||||||||| | |||||||||| ||||| |||||||||||||  |  |||||| ||||||||||| || |||||||    
T  20566408 aggttcgattccctctggtgccaatttcggtgggcaaagtccatacagagct-tgctctggctttaaacggagcccccgcaagtgggcgctgggattggt 20566506  T
Q  181 cccatcagatcagtcgattcttg 203  Q
    ||| |||||| ||||||||||||    
T  20566507 cccctcagattagtcgattcttg 20566529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 25852231 - 25852336
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  25852231 ggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 25852329  T
Q  142 ggcttta 148  Q
    |||||||    
T  25852330 ggcttta 25852336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 33992643 - 33992748
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||| ||| ||| ||||||||||||| ||   | ||||||||||||||| ||| |||||  ||||||||||| ||||||||||||  |||| ||||||    
T  33992643 ggttggtttgggatcttggagtttgctcctccagaggtcttaggttcgattctctctggtgccaatttcggtgggctaagtccatacatagct-tgctct 33992741  T
Q  142 ggcttta 148  Q
    |||||||    
T  33992742 ggcttta 33992748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 53787175 - 53787082
Alignment:
Q  105 aatttcggtggactaagtccatacggagctatgctctggcttt-agctcag-ccccgcaagtgggcggtgtgattggtcccatcagatcagtcg 196  Q
    ||||||||||| |||||||||| |||||||||||||||||||| | |  || |||||||| ||||||||| |||| ||||| |||||| |||||    
T  53787175 aatttcggtgggctaagtccatgcggagctatgctctggctttaaacggagcccccgcaaatgggcggtgggattagtcccctcagattagtcg 53787082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 206
Target Start/End: Original strand, 46714409 - 46714575
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatc-tttggtggtaatttcggtggactaagtccatacggagctatgctc 140  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  | |||||||  ||||||||||| |||||||||||| ||||| ||| |    
T  46714409 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatttccctttggtgccaatttcggtgggctaagtccatacagagct-tgccc 46714507  T
Q  141 tggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttgaat 206  Q
    | ||||||     |  |||||||||||||||||| |||||||||| || ||| |||| ||||||||||    
T  46714508 ttgctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcaattcttgaat 46714575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 13771663 - 13771557
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||| ||||||||| |||| | |||| |  |||||||  || || ||  ||| ||||||| ||||||||||||| |||||||||||    
T  13771663 ggttggcttgggatcttgaagtttgctcatctcaaggtctcaaattcgattccctctgatgtcaatctcggtgggctaagtccatacgaagctatgctct 13771564  T
Q  142 ggcttta 148  Q
    |||||||    
T  13771563 ggcttta 13771557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 54127522 - 54127360
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| |||||| |||  || | |||  ||||||||||| ||||||| |||| ||||| ||||||    
T  54127522 ggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcaattccctcttgtgccaatttcggtgggctaagtctatacagagct-tgctct 54127424  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||| ||||||    
T  54127423 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcggttcttg 54127360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 9978575 - 9978528
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattctt 202  Q
    |||||||||||||||||| ||||||||||||| ||| ||| |||||||    
T  9978575 ccccgcaagtgggcggtgggattggtcccatcggattagttgattctt 9978528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 43719245 - 43719154
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagc 133  Q
    |||||| ||||||| ||||||||||||| ||   | || | |||||||||| ||| | ||| |||||||||||| |||||||||||| ||||    
T  43719245 ggttggtttgagatcttggagtttgctcctccagaggtttcaggttcgattctctctagtgctaatttcggtgggctaagtccatacagagc 43719154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 206
Target Start/End: Original strand, 44343574 - 44343696
Alignment:
Q  85 gttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctttag-ctcagc-cccgcaagtgggcggtgtgattggtcc 182  Q
    ||||||||  || ||||| |||||| ||||| |||||||||||| ||||| ||||||| |||||  |   || ||||||||||||||||| |||||||||    
T  44343574 gttcgattccctctggtgctaattttggtgggctaagtccatacagagct-tgctctgactttaaacggggctcccgcaagtgggcggtgggattggtcc 44343672  T
Q  183 catcagatcagtcgattcttgaat 206  Q
    | ||  || |||||||||||||||    
T  44343673 cctcgaattagtcgattcttgaat 44343696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 216
Target Start/End: Original strand, 49287875 - 49288049
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||| ||| ||| ||||||||||||| ||   | |||| |||||||||| ||| |||||  ||||||||||| ||||||||||||  |  | |||| |    
T  49287875 ggttggtttgggatcttggagtttgctcctccagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatac-aaaatttgctat 49287973  T
Q  142 ggctttagctcagc-cccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttgaataaaatactga 216  Q
    |||||||     || |||||||||||||| || |||||||||| || ||| |||||||||||| || | |||||||    
T  49287974 ggctttaaacgggctcccgcaagtgggcgctgagattggtcccctcggattagtcgattcttggatcagatactga 49288049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 1985853 - 1985939
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatac 128  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  ||||||||  ||||||| ||| ||||||||||||    
T  1985853 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctttggtgcgaatttcgatgggctaagtccatac 1985939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 13584434 - 13584329
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    ||||||| |||||| ||||||||||||| ||   |||||| | ||||||||  || |||||  ||||||| ||| |||||||||||  ||||| ||||||    
T  13584434 ggttggcctgagatattggagtttgctcctccaaaagtctcaagttcgattccctctggtgtcaatttcgatgggctaagtccatagagagct-tgctct 13584336  T
Q  142 ggcttta 148  Q
    |||||||    
T  13584335 ggcttta 13584329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 32942387 - 32942492
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||||||| ||||||||| ||| ||   | || | |||||||||| ||| || ||  ||||||||||| |||||||||||| ||||| | ||||    
T  32942387 ggttggcttgagatcttggagtttactcctccagaggtttaaggttcgattctctctgatgccaatttcggtgggctaagtccatacagagct-tactct 32942485  T
Q  142 ggcttta 148  Q
    |||||||    
T  32942486 ggcttta 32942492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 18177067 - 18176905
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    ||||| |||||||| ||||||||||||||||   | || | ||||||||||  || |||||  |||||||||||||||||||||||| ||||| ||||||    
T  18177067 ggttgacttgagatcttggagtttgctcttccagaggtatcaggttcgattccctctggtgccaatttcggtggactaagtccatacagagct-tgctct 18176969  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| ||||||||||||| ||| ||||||||||||    
T  18176968 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccatcggattagtcgattcttg 18176905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 15566679 - 15566518
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||||||| ||||||||||||| ||   | |||| ||||||||||  || | |||  ||||||||||| |||||||||||| ||||| ||||||    
T  15566679 ggttggcttgagatcttggagtttgctcctccagaggtctcaggttcgattccctctagtgccaatttcggtgggctaagtccatacagagct-tgctct 15566581  T
Q  142 ggcttt-agctcagccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||| | |    |||||||||||||||||| |||||||||| |||||| ||||||||||||    
T  15566580 ggctttaaacgggcccccgcaagtgggcggtgggattggtcccctcagattagtcgattcttg 15566518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 53234090 - 53233927
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   |||||| |||||||||| ||| |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  53234090 ggttggcttgggatcttggagtttgctcctccagaagtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 53233992  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttga 204  Q
    |||| ||     |  |||||||||||||||||| |||||||||| || ||| |||||||||||||    
T  53233991 ggctctaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttga 53233927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 30257641 - 30257803
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  ||||||||  ||||||| |||||||||||||||| ||||| ||||||    
T  30257641 ggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctttggtgccaatttcgatggactaagtccatacagagct-tgctct 30257739  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||  |  |  ||||||||||||||||||  ||||||||| || ||| ||||||||||||    
T  30257740 ggctttaaatggggcccccgcaagtgggcggtggcattggtcccctcggattagtcgattcttg 30257803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 26174130 - 26174292
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  |||||||||||  ||||||||||| ||||| ||||||    
T  26174130 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatttcctctggtgccaatttcggtgggttaagtccatacagagct-tgctct 26174228  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||  |  |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  26174229 ggctttaaatagggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 26174292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 35492928 - 35493090
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  35492928 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 35493026  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  35493027 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 35493090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 40133629 - 40133467
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||||||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  40133629 ggttggcttgggattttggagtttgctcctccaaaggtctcaggttcgattccctctggtgtcaatttcggtgggctaagtccatacagagct-tgctct 40133531  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| ||  || ||||||||||||    
T  40133530 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcgaattagtcgattcttg 40133467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 206
Target Start/End: Complemental strand, 8456330 - 8456165
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| || |||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  8456330 ggttggcttgggatcttcgagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 8456232  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttgaat 206  Q
    |||||||     |  |||||||||||||| ||| |||||||||| || ||| |||||||||||||||    
T  8456231 ggctttaaacggggcccccgcaagtgggcagtgggattggtcccctcggattagtcgattcttgaat 8456165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 52821815 - 52821654
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    ||||| |||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||  |||||||||||| ||||| ||||||    
T  52821815 ggttgacttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgagctaagtccatacagagct-tgctct 52821717  T
Q  142 ggcttt-agctcagccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||| | |   |||||| |||||||||||| |||||||||| || ||| ||||||||||||    
T  52821716 ggctttaaacggggccccgtaagtgggcggtgggattggtcccctcggattagtcgattcttg 52821654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 53424356 - 53424195
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  ||||||||  ||||||||||| |||||||||||| ||| | |||| |    
T  53424356 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctttggtgccaatttcggtgggctaagtccatacagag-tttgctat 53424258  T
Q  142 ggcttt-agctcagccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||| | |    ||||||||||| |||||| |||||||||| || ||| ||||||||||||    
T  53424257 ggctttaaacgggcccccgcaagtgagcggtgggattggtcccctcggattagtcgattcttg 53424195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 45529934 - 45529771
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || ||| |  ||||||| ||| |||||||||||| ||||| ||||||    
T  45529934 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggagccaatttcgatgggctaagtccatacagagct-tgctct 45529836  T
Q  142 ggctttagctcagcccc--gcaagtgggcggtgtgattggtcccatcagatcagtcgattcttga 204  Q
    |||||||     |||||  |||||||||||||| |||||||||| || ||| |||||||||||||    
T  45529835 ggctttaaacgggccccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttga 45529771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 1692914 - 1693015
Alignment:
Q  105 aatttcggtggactaagtccatacggagctatgctctggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattctt 202  Q
    ||||||||||||||||||| |||| || || ||||||||||||||  |||  |||||||||||||||||| |||| | ||| |||||| |||||||||||    
T  1692914 aatttcggtggactaagtctatacagaact-tgctctggctttag-acaggcccccgcaagtgggcggtgggatttgccccctcagattagtcgattctt 1693011  T
Q  203 gaat 206  Q
    ||||    
T  1693012 gaat 1693015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 45272595 - 45272454
Alignment:
Q  43 gttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctg 142  Q
    ||||||||| ||| ||||||||||||| ||   | |||| || |||||||  || |||||  ||||||||||| |||||||||||||||||| |||||||    
T  45272595 gttggcttgggatcttggagtttgctcctccagatgtctcagtttcgattccctctggtgccaatttcggtgggctaagtccatacggagct-tgctctg 45272497  T
Q  143 gctttagctcag--ccccgcaagtgggcggtgtgattggtccc 183  Q
    ||||||     |  |||||||||||||||||| ||||||||||    
T  45272496 gctttaaacggggcccccgcaagtgggcggtgggattggtccc 45272454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 26108309 - 26108414
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  26108309 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 26108407  T
Q  142 ggcttta 148  Q
    |||||||    
T  26108408 ggcttta 26108414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 30807333 - 30807228
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  30807333 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 30807235  T
Q  142 ggcttta 148  Q
    |||||||    
T  30807234 ggcttta 30807228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 40940842 - 40940947
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  |||||||||||||||||||||||| ||||| ||||||    
T  40940842 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtggactaagtccatacagagct-tgctct 40940940  T
Q  142 ggcttta 148  Q
    | |||||    
T  40940941 gacttta 40940947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 183
Target Start/End: Complemental strand, 25289894 - 25289752
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || | |||  ||||||||||| |||||||||||| ||||| ||||||    
T  25289894 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctagtgccaatttcggtgggctaagtccatacagagct-tgctct 25289796  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtccc 183  Q
    |||||||     |  |||||||||||||||||| ||||||||||    
T  25289795 ggctttaaacggggcccccgcaagtgggcggtgggattggtccc 25289752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 46576365 - 46576527
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  |||||| |||| |||||||||||| ||||| ||||||    
T  46576365 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcagtgggctaagtccatacagagct-tgctct 46576463  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||  |||||||||| |  ||| ||||||||||||    
T  46576464 ggctttaaacggggcccccgcaagtgggcggtcggattggtccccttggattagtcgattcttg 46576527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 49258442 - 49258280
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||| ||||||||| ||   | |||| ||||||||||  || | |||  ||||||||||| |||||||||||| ||||| ||||||    
T  49258442 ggttggcttgggatcttgcagtttgctcctccagaggtctcaggttcgattccctctagtgccaatttcggtgggctaagtccatacagagct-tgctct 49258344  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||| ||||||||||||| |||||||||| || ||| ||||||||||||    
T  49258343 ggctttaaacggggcccccacaagtgggcggtgggattggtcccctcggattagtcgattcttg 49258280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 204
Target Start/End: Original strand, 51532807 - 51532969
Alignment:
Q  43 gttggcttgagattttggagtttgctcttctccaa--gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctc 140  Q
    ||||| ||||||||||||||||||||  |||||||  |||| | |||||||| ||| |  ||  ||||||||||| |||||||||||| ||||| |||||    
T  51532807 gttggtttgagattttggagtttgct--tctccaaaggtctcatgttcgattctctctaatgccaatttcggtgggctaagtccatacagagct-tgctc 51532903  T
Q  141 tggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttga 204  Q
    |  |||||  |  |  |||||||||||| ||||| |||||||||| |||||| ||||| |||||||    
T  51532904 taactttaaatgggacccccgcaagtggacggtgggattggtcccctcagattagtcggttcttga 51532969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 8097418 - 8097297
Alignment:
Q  83 aggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctttagctcag--ccccgcaagtgggcggtgtgattggt 180  Q
    ||||||||||  || | ||| |||||||| ||| |||||||||||| |||| ||||||||||||||     |  |||||||||||||||||| |||||||    
T  8097418 aggttcgattccctcttgtgctaatttcgatgggctaagtccatacagagc-atgctctggctttaaacggggcccccgcaagtgggcggtgggattggt 8097320  T
Q  181 cccatcagatcagtcgattcttg 203  Q
    ||| || ||| ||||||||||||    
T  8097319 cccctcggattagtcgattcttg 8097297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 10190936 - 10190760
Alignment:
Q  27 tttaactcatttggaggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccat 126  Q
    |||||| ||||||| |||||||||| ||| ||||||||||||| ||   | | || ||||| ||||  || | |||  ||||||||||| ||||||||||    
T  10190936 tttaacccatttgg-ggttggcttgggatcttggagtttgctcctccagagggctcaggtttgattccctctagtgccaatttcggtgggctaagtccat 10190838  T
Q  127 acggagctatgctctggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    || ||||| |||||||||||||     |  |||||||||||| ||||| |||||||||| || ||| ||||||||||||    
T  10190837 acagagct-tgctctggctttaaacggggcccccgcaagtggacggtgggattggtcccctcggattagtcgattcttg 10190760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 21362960 - 21363122
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    ||||| |||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||| | |||||||||||| ||||| ||||||    
T  21362960 ggttgacttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgtcaatttcggtaggctaagtccatacagagct-tgctct 21363058  T
Q  142 ggcttt-agctcag-ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||| | |  || |||||||||||||||||| ||||||| || || ||| | ||||||||||    
T  21363059 ggctttaaacggagcccccgcaagtgggcggtgggattggttccctcggattaatcgattcttg 21363122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 49167073 - 49167159
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaag-tcttaggttcgattatctttggtggtaatttcggtggactaagtccatac 128  Q
    |||||||||||||| ||||||||||||| || | ||| | | |||||||||| ||| |||||  ||||||||||||||||||||||||    
T  49167073 ggttggcttgagatcttggagtttgctcctc-caaagatatcaggttcgattctctctggtgtcaatttcggtggactaagtccatac 49167159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 25379778 - 25379940
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||   | | |||  |||||||| || |||||||||||| ||||| ||||||    
T  25379778 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccttctagtgccaatttcggagggctaagtccatacagagct-tgctct 25379876  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  ||||||||| |||||||| |||||||||| || ||| ||||||||||||    
T  25379877 ggctttaaacggggcccccgcaagcgggcggtgggattggtcccctcggattagtcgattcttg 25379940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 34492755 - 34492593
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| | ||||||||  || || ||  ||||||| ||| |||||||||||| ||||| ||||||    
T  34492755 ggttggcttgggatcttggagtttgctcctccagaggtctcatgttcgattccctctgctgccaatttcgttgggctaagtccatacagagct-tgctct 34492657  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||  |||||| ||| ||||||||    
T  34492656 ggctttaaacggggcccccgcaagtgggcggtgggattggtccattcagattagttgattcttg 34492593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 53848500 - 53848452
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  53848500 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 53848452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 29915336 - 29915285
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttgaat 206  Q
    |||||||||||||||||| ||||| |||||||  || |||||||||||||||    
T  29915336 ccccgcaagtgggcggtgggattgatcccatcgaattagtcgattcttgaat 29915285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 29964489 - 29964438
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttgaat 206  Q
    |||||||||||||||||| ||||| |||||||  || |||||||||||||||    
T  29964489 ccccgcaagtgggcggtgggattgatcccatcgaattagtcgattcttgaat 29964438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 203
Target Start/End: Complemental strand, 39042027 - 39041870
Alignment:
Q  47 gcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctt 146  Q
    ||||| ||| ||||||||||||| ||   | |||| | |||||||| ||| |||||  ||||||||||| |||||||||| | ||||| |||||||||||    
T  39042027 gcttgggatcttggagtttgctcctccagaggtctcaagttcgattctctctggtgccaatttcggtgggctaagtccatgcagagct-tgctctggctt 39041929  T
Q  147 tagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    ||     |  ||||||||||||| |||| |||||||||  || ||| ||||||||||||    
T  39041928 taaacggggcccccgcaagtgggtggtgggattggtccactcggattagtcgattcttg 39041870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 17579199 - 17579157
Alignment:
Q  157 ccgcaagtgggcggtgtgattggtcccatcagatcagtcgatt 199  Q
    |||||||||||||||| |||||||||| |||||| ||||||||    
T  17579199 ccgcaagtgggcggtgagattggtcccctcagattagtcgatt 17579157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 24165782 - 24165733
Alignment:
Q  154 gccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    ||||||||||||||||||| ||||| |||| || ||| ||||||||||||    
T  24165782 gccccgcaagtgggcggtgggattgttcccctcggattagtcgattcttg 24165733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 24407395 - 24407440
Alignment:
Q  158 cgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    ||||||||||||||| |||||||||| || ||| ||||||||||||    
T  24407395 cgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 24407440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 8958101 - 8958053
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||||||||||||| |||||||||| || ||| | ||||||||||    
T  8958101 ccccgcaagtgggcggtgggattggtcccctctgattaatcgattcttg 8958053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 32151555 - 32151603
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||||||||||||| |||||||||| ||  || ||||||||||||    
T  32151555 ccccgcaagtgggcggtgagattggtcccctcgaattagtcgattcttg 32151603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 48105008 - 48105056
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||| ||||||||||||| |||||||||| || ||| ||||||||||||    
T  48105008 ccccacaagtgggcggtgagattggtcccttcggattagtcgattcttg 48105056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 7176042 - 7175880
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  7176042 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 7175944  T
Q  142 ggctttagctcag---ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||   |||   |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  7175943 ggcttta-aacaggacccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 7175880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 7275298 - 7275460
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  7275298 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 7275396  T
Q  142 ggctttagctcag---ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||   |||   |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  7275397 ggcttta-aacagggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 7275460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 206
Target Start/End: Original strand, 27704023 - 27704187
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||||||| ||| ||||||||| |    | |||| ||||||||||  ||||||||  ||||||||||| |||||||||||  ||||| |||| |    
T  27704023 ggttggcttgagatcttgaagtttgctcctacagaggtctcaggttcgatttcctttggtgccaatttcggtgggctaagtccatagagagct-tgcttt 27704121  T
Q  142 ggctttagctc-agccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttgaat 206  Q
    |||||||  |  | ||||||||||||| |||||||||| |||| |||||| |||||||||||||||    
T  27704122 ggctttaaatggacccccgcaagtgggtggtgtgattgatcccctcagattagtcgattcttgaat 27704187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 22119909 - 22120071
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  22119909 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 22120007  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  22120008 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 22120071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 40543090 - 40542928
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  40543090 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 40542992  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  40542991 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 40542928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 10091209 - 10091372
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || ||| |  ||||||||||| |||||||||||| ||||| ||||||    
T  10091209 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggagccaatttcggtgggctaagtccatacagagct-tgctct 10091307  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttga 204  Q
    |||||||  |  |  |||||||||||||||||| ||||| |||| || ||| |||||||||||||    
T  10091308 ggctttaaatggggtccccgcaagtgggcggtgggattgatcccctcggattagtcgattcttga 10091372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 2751292 - 2751454
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  2751292 ggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 2751390  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||| ||||||||| |||||||||| || ||| ||||||||||||    
T  2751391 ggctttaaacggggcccccgcaaatgggcggtgggattggtcccctcggattagtcgattcttg 2751454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 21835172 - 21835334
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   |  ||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  21835172 ggttggcttgggatcttggagtttgctcctccagagatctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 21835270  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  21835271 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 21835334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 11997870 - 11998032
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| |||  | |||| ||||||||||  || |||||  ||||||||| | ||||||||||||  |||| ||||||    
T  11997870 ggttggcttgggatcttggagtttgctcctctagaggtctcaggttcgattccctctggtgccaatttcggttggctaagtccatacatagct-tgctct 11997968  T
Q  142 ggcttt-agctcag-ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||| | ||  | |||||||||||||||||| |||||||||| ||  || ||||||||||||    
T  11997969 ggctttaaactgggcccccgcaagtgggcggtgggattggtcccctcgaattagtcgattcttg 11998032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 202
Target Start/End: Original strand, 22703507 - 22703668
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| ||||||||||||  |||| ||||||    
T  22703507 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgtcaatttcggtgggctaagtccatacaaagct-tgctct 22703605  T
Q  142 ggcttt--agctcagccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattctt 202  Q
    ||||||  |    | |||||||||||||||||| |||||||||| || ||| |||||||||||    
T  22703606 ggctttaaacgggacccccgcaagtgggcggtgggattggtcccctcggattagtcgattctt 22703668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 42 - 200
Target Start/End: Original strand, 2103076 - 2103234
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || ||| |  ||||||||||| |||||||||||| ||||| ||||||    
T  2103076 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggagccaatttcggtgggctaagtccatacagagct-tgctct 2103174  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattc 200  Q
    |||||||  |  |  |||||||||||||||||| |||||||||| || ||| |||||||||    
T  2103175 ggctttaaatggggcccccgcaagtgggcggtgggattggtccc-tcggattagtcgattc 2103234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 654848 - 654723
Alignment:
Q  78 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttt-agctcagccccgcaagtgggcggtgtgat 176  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||| | |    |||||||||||||||||| |||    
T  654848 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacgggcccccgcaagtgggcggtgggat 654750  T
Q  177 tggtcccatcagatcagtcgattcttg 203  Q
    ||||||| || ||| ||||| ||||||    
T  654749 tggtcccctcggattagtcggttcttg 654723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 28089837 - 28090002
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatac----ggagctatg 137  Q
    |||||||||||||| ||||||||||||| ||   | |||| |||||||||   || |||||  ||||||||||| ||||||||||||     ||||| ||    
T  28089837 ggttggcttgagatcttggagtttgctcctccagatgtctcaggttcgataccctctggtgtcaatttcggtgggctaagtccatacaaagtgagct-tg 28089935  T
Q  138 ctctggctttagctcag-ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||||||  |  | ||||||||||||||| || |||||||||| || ||| ||||||||||||    
T  28089936 ctctggctttaaatgggcccccgcaagtgggcgatgagattggtcccctcggattagtcgattcttg 28090002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 206
Target Start/End: Original strand, 19421252 - 19421417
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctt-tggtggtaatttcggtggactaagtccatacggagctatgctc 140  Q
    |||||||||| ||| ||||||||||||| |||  | |||| |||||||||| |||| |||||  ||||||| ||| |||||||||||| ||||| |||||    
T  19421252 ggttggcttgggatcttggagtttgctcctctagaggtctcaggttcgatt-tcttctggtgtcaatttcgatgggctaagtccatacagagct-tgctc 19421349  T
Q  141 tggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttgaat 206  Q
    || |||||  |  |   ||| ||||||||||||| |||||||| | || ||| |||||||||||||||    
T  19421350 tgactttaaatggggcgcccacaagtgggcggtgggattggtctcctcggattagtcgattcttgaat 19421417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 27312287 - 27312335
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||||||||||||| |||||||||| |||||| ||||||||||||    
T  27312287 ccccgcaagtgggcggtgggattggtcccctcagattagtcgattcttg 27312335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 42814885 - 42814971
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatac 128  Q
    ||||| |||| ||| ||||||||||||| |||  |||||| ||||||||||  || |||||  ||||||||||| ||||||||||||    
T  42814885 ggttgacttgggatcttggagtttgctcctcttgaagtctcaggttcgattccctctggtgtcaatttcggtgggctaagtccatac 42814971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 17197130 - 17196968
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||| ||| ||| ||||||||||||| ||   | |||| | ||||||||  || |||||  ||||||||||  |||||||||||| ||||| ||||||    
T  17197130 ggttggtttgcgatcttggagtttgctcctccataggtctcaagttcgattccctctggtgccaatttcggtgagctaagtccatacagagct-tgctct 17197032  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| ||  || ||||||||||||    
T  17197031 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcgaattagtcgattcttg 17196968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 17212074 - 17212177
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| |||||| ||| ||| |||||  ||||||||||| |||||||||||| ||| | ||||||    
T  17212074 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcaattctctctggtgccaatttcggtgggctaagtccatacagagat-tgctct 17212172  T
Q  142 ggctt 146  Q
    |||||    
T  17212173 ggctt 17212177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 183
Target Start/End: Complemental strand, 23012688 - 23012546
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||  ||   | |||||||||| ||||  || | |||  ||||||||||| |||||||||||| ||||| ||||||    
T  23012688 ggttggcttgggatcttggagtttgcttctccagaggtcttaggtttgattccctctagtgccaatttcggtgggctaagtccatacagagct-tgctct 23012590  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtccc 183  Q
    |||||||  |  |  |||| ||||||||||||| ||||||||||    
T  23012589 ggctttaaatggggcccccacaagtgggcggtgggattggtccc 23012546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 31197725 - 31197773
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||    
T  31197725 ccccgcaagtggtcggtgggattggtcccctcagattagtcgattcttg 31197773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 42913693 - 42913532
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| |||  | |||| ||||||||||   | |||||  ||||||| |||  |||||||||||||| || ||||||    
T  42913693 ggttggcttgggatcttggagtttgctcctctagaggtctcaggttcgatttcatatggtgccaatttcgatgggataagtccatacggaact-tgctct 42913595  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattctt 202  Q
    |||||||     |  |||||||||||| ||||| |||||||||| || ||| ||| |||||||    
T  42913594 ggctttaaacggggcccccgcaagtggacggtgggattggtcccctcggattagttgattctt 42913532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 9718167 - 9718062
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    ||||||| |||||| ||||||||||||| ||   |||||| | ||||||||  || |||||  ||||||| ||| |||||||||||  ||||| ||||||    
T  9718167 ggttggcctgagatattggagtttgctcctccaaaagtctcaagttcgattccctctggtgtcaatttcgatgggctaagtccatagagagct-tgctct 9718069  T
Q  142 ggcttta 148  Q
    |||||||    
T  9718068 ggcttta 9718062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 21218013 - 21217908
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || || ||  ||||||||||| |||||||||||| ||||| ||||||    
T  21218013 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctgatgccaatttcggtgggctaagtccatacagagct-tgctct 21217915  T
Q  142 ggcttta 148  Q
     ||||||    
T  21217914 agcttta 21217908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 47380919 - 47380969
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgatt 92  Q
    |||||||||||||||||| |||||||||||||| |  | ||||||||||||    
T  47380919 ggttggcttgagattttgtagtttgctcttctcaagattttaggttcgatt 47380969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 3851841 - 3851940
Alignment:
Q  105 aatttcggtggactaagtccatacggagctatgctctggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattctt 202  Q
    ||||||||||| |||||||||||  ||||| |||||||||||||     |  |||||||||||||||||| ||||| |||| || ||| |||||||||||    
T  3851841 aatttcggtgggctaagtccatatagagct-tgctctggctttaaacggggcccccgcaagtgggcggtgggattgatcccctcggattagtcgattctt 3851939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 31712965 - 31712920
Alignment:
Q  158 cgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    ||||||||||||||| |||||||||| || ||| ||||||||||||    
T  31712965 cgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 31712920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 183
Target Start/End: Complemental strand, 8943467 - 8943439
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtccc 183  Q
    |||||||||||||||||||||||||||||    
T  8943467 ccccgcaagtgggcggtgtgattggtccc 8943439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 23330919 - 23330816
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| |||||| |||| ||||| |||| | |||| |||||||| |  ||  ||||  ||||||||||| | |||||||||| ||||| ||||||    
T  23330919 ggttggcttgggattttagagtgtgctcctctcaaggtctcaggttcgactccctccggtgccaatttcggtgggc-aagtccatacagagctttgctct 23330821  T
Q  142 ggctt 146  Q
    |||||    
T  23330820 ggctt 23330816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 25333538 - 25333586
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||||||||| ||| |||||||||| || ||| ||||||||||||    
T  25333538 ccccgcaagtgggcagtgggattggtcccctcggattagtcgattcttg 25333586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 14946796 - 14946902
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    ||||| |||||||| ||| ||||||||| |||| | || |||||||||||| ||| |||||  |||||| |||| |||||||||||||||||||||||||    
T  14946796 ggttgacttgagatcttgaagtttgctcctctcaaggttttaggttcgattttctctggtgtcaatttcagtgggctaagtccatacggagctatgctct 14946895  T
Q  142 ggcttta 148  Q
     ||||||    
T  14946896 agcttta 14946902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 57 - 203
Target Start/End: Original strand, 15037991 - 15038138
Alignment:
Q  57 ttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctttag-ctcagc 155  Q
    ||||||||||||| ||   | |||| ||||||||||  ||||||||  ||||||||||| |||||||||||| ||||| |||| ||||||||  |  |||    
T  15037991 ttggagtttgctcctccaaaggtctcaggttcgattccctttggtgccaatttcggtgggctaagtccatacagagct-tgctttggctttaaacggagc 15038089  T
Q  156 ccc-gcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    ||| |||||||||||||| |||||||||| |||||| ||||||||||||    
T  15038090 ccccgcaagtgggcggtgggattggtcccctcagattagtcgattcttg 15038138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 44946233 - 44946071
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  ||||||||  ||||||||||| |||||||||||| || || ||||||    
T  44946233 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctttggtgccaatttcggtgggctaagtccatacagaact-tgctct 44946135  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  44946134 ggctttaaacgggccccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 44946071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 30467010 - 30466848
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||| ||| ||| |||||||||| || |||  | |||| |||||||||| ||| || ||  ||||||||||| |||||||||||| ||||| ||||||    
T  30467010 ggttggtttgggatattggagtttgttcctctagaggtctcaggttcgattctctctgctgccaatttcggtgggctaagtccatacagagct-tgctct 30466912  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||   | |  |||||||||||||| ||| |||||||||| || ||| ||||||||||||    
T  30466911 ggctttaaaccgggcccccgcaagtgggcagtgggattggtcccttcggattagtcgattcttg 30466848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 42 - 199
Target Start/End: Original strand, 24196021 - 24196177
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| |||||||| ||| |||| ||   | || | ||||||||||  || |||||  ||||||||||| |||||||||||| || || ||||||    
T  24196021 ggttggcttgggattttggggttcgctcctccagaggtttcaggttcgattccctctggtgcaaatttcggtgggctaagtccatacagaact-tgctct 24196119  T
Q  142 ggctttagctcagccccgcaagtgggcggtgtgattggtcccatcagatcagtcgatt 199  Q
    |||||||     ||||||||||||||||||| |||||||||| || ||| ||||||||    
T  24196120 ggctttaaacgggccccgcaagtgggcggtgggattggtcccctcggattagtcgatt 24196177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 34516536 - 34516432
Alignment:
Q  99 ggtggtaatttcggtggactaagtccatacggagctatgctctggctttagctcagcccc-gcaagtgggcggtgtgattggtcccatcagatcagtcga 197  Q
    ||||||||||||||||| |||||||||||| ||||| |||||| ||||||     ||||| |||||||||||||| |||||||||| || ||| ||||||    
T  34516536 ggtggtaatttcggtgggctaagtccatacagagct-tgctctcgctttaaacgggcccctgcaagtgggcggtgggattggtcccctcggattagtcga 34516438  T
Q  198 ttcttg 203  Q
    ||||||    
T  34516437 ttcttg 34516432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 17324798 - 17324945
Alignment:
Q  57 ttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctttagctcag-c 155  Q
    ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||  |  | |    
T  17324798 ttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaatgggcc 17324896  T
Q  156 cccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttga 204  Q
    ||| ||||||||||||| |||| ||||| ||| || |||||||||||||    
T  17324897 cccacaagtgggcggtgggattagtcccctcaaattagtcgattcttga 17324945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 35171880 - 35171982
Alignment:
Q  105 aatttcggtggactaagtccatacggagctatgctctggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattctt 202  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||     |  |||||||||||||||||| |||||||||| || ||| |||||||||||    
T  35171880 aatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattctt 35171978  T
Q  203 gaat 206  Q
    ||||    
T  35171979 gaat 35171982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 36390712 - 36390584
Alignment:
Q  78 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctttagctcag--ccccgcaagtgggcggtgtga 175  Q
    |||| ||||||||||  || |||||  ||||||||||||||||||||||||  |||| ||||||| |||||  |  |  |||||||||||||||||| ||    
T  36390712 gtctcaggttcgatttcctctggtgccaatttcggtggactaagtccatacaaagct-tgctctgactttaaatgggacccccgcaagtgggcggtggga 36390614  T
Q  176 ttggtcccatcagatcagtcgattcttgaat 206  Q
    |||||||| || ||||||||||| |||||||    
T  36390613 ttggtccc-tcggatcagtcgatacttgaat 36390584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 13266507 - 13266668
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||||||| ||||| ||||||| | |  | |||| | ||||||||  || |||||  |||| ||||||||||||||||||| ||||| ||||||    
T  13266507 ggttggcttgagatcttggaatttgctcctttagaggtctcatgttcgattcactctggtgccaattccggtggactaagtccatacagagct-tgctct 13266605  T
Q  142 ggcttt-agctcagccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||| | |   ||||||||||||||   || |||||||||| ||| || ||||||||||||    
T  13266606 ggctttaaacggggccccgcaagtgggtaatgggattggtcccctcaaattagtcgattcttg 13266668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 27290605 - 27290710
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  ||| ||||  ||||||||||| |||||||||||| ||||| ||||||    
T  27290605 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattcccttcggtgccaatttcggtgggctaagtccatacagagct-tgctct 27290703  T
Q  142 ggcttta 148  Q
    |||||||    
T  27290704 ggcttta 27290710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 11941390 - 11941228
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| |||||| |||  || |||||  ||||| |||||  ||||||||||| ||||| ||||||    
T  11941390 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcaattccctatggtgccaattttggtgggttaagtccatacagagct-tgctct 11941292  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  11941291 ggctttaaacgggacccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 11941228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 10582170 - 10582065
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  10582170 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 10582072  T
Q  142 ggcttta 148  Q
     ||||||    
T  10582071 agcttta 10582065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 43374505 - 43374348
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| |    | |||| ||||||||||  || |||||  ||||||||||| ||||||  ||||  |||| ||||||    
T  43374505 ggttggcttgggatcttggagtttgctccttcagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtttatacaaagct-tgctct 43374407  T
Q  142 ggcttt-agctcagccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||| |||    ||||||||||| |||||| |||||||||| || ||| ||||||||||||    
T  43374406 ggctttaagc----ccccgcaagtgagcggtgggattggtcccttcggattagtcgattcttg 43374348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 33827753 - 33827591
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| |||||| |||||| ||   | |||| ||||||||||  || |||||  ||||||| ||| |||||||||||| ||||| ||||||    
T  33827753 ggttggcttgggatcttggagattgctcctccagaggtctcaggttcgattccctctggtgccaatttcgttgggctaagtccatacagagct-tgctct 33827655  T
Q  142 ggcttt--agctcagccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    ||||||  |    | ||| |||||||||||||| |||||||||| |  ||| ||||||||||||    
T  33827654 ggctttaaacgggacccctgcaagtgggcggtgggattggtccccttggattagtcgattcttg 33827591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 182
Target Start/End: Original strand, 5394034 - 5394175
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||||||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||| ||| |||||||||||| ||| | ||||||    
T  5394034 ggttggcttgagatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgtcaatttcgatgggctaagtccatacagag-tttgctct 5394132  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcc 182  Q
    | |||||  |  |  | |||||||||||||||| |||||||||    
T  5394133 gactttaaatggggccgccgcaagtgggcggtgggattggtcc 5394175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 40591201 - 40591290
Alignment:
Q  43 gttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctt-tggtggtaatttcggtggactaagtccatacggagc 133  Q
    ||||||||||||| ||||||| ||||| |||| |||||| ||||| |||| |||| |||||| ||||||||||| | |||||||||| ||||    
T  40591201 gttggcttgagatcttggagtgtgctcctctcaaagtctcaggtttgatt-tcttctggtggcaatttcggtgggc-aagtccatacagagc 40591290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 8192531 - 8192377
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||| ||||| |||| | |||| ||||||||||  || |||||  ||| ||||||| | |||||||||  ||||| ||||||    
T  8192531 ggttggcttgggatcttggagtgtgctcctctcaaggtctcaggttcgattccctctggtgccaatgtcggtgggc-aagtccatatagagctttgctct 8192433  T
Q  142 ggctttagctcagccc--cgcaagtgggcggtgtgattggtcccatcagatcagtcg 196  Q
    ||| ||||  | ||||  ||||||||||||||| |||||| ||| || ||| |||||    
T  8192432 ggc-ttagaacggcccctcgcaagtgggcggtgggattgggcccctcggattagtcg 8192377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 28194311 - 28194223
Alignment:
Q  44 ttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagc 133  Q
    |||||||| ||| ||||||| ||||| |||  | ||||||||||||||| ||| |||||  ||||||||||| | |||||||||| ||||    
T  28194311 ttggcttgggatcttggagtgtgctcctcttaaggtcttaggttcgattctctctggtgccaatttcggtgggc-aagtccatacagagc 28194223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 2140552 - 2140508
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgatt 199  Q
    |||||||||||||||||| |||||||||| || ||| ||||||||    
T  2140552 ccccgcaagtgggcggtgggattggtcccctcggattagtcgatt 2140508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 18976521 - 18976473
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||||||||||||| |||||||||| ||  || ||||||||||||    
T  18976521 ccccgcaagtgggcggtgggattggtcccctcgaattagtcgattcttg 18976473  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 19054157 - 19054205
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||||||||||||| |||||||||  || ||| ||||||||||||    
T  19054157 ccccgcaagtgggcggtgggattggtccgctcggattagtcgattcttg 19054205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 25293290 - 25293338
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    ||||||||||||||| || |||||||||| || ||| ||||||||||||    
T  25293290 ccccgcaagtgggcgatgggattggtcccctcggattagtcgattcttg 25293338  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 36242378 - 36242330
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||||||||||||| |||||||||| || ||| | ||||||||||    
T  36242378 ccccgcaagtgggcggtgggattggtcccctcggattaatcgattcttg 36242330  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 41329973 - 41330021
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||| ||||||||||||| |||||||||| |||||| ||||| ||||||    
T  41329973 ccccacaagtgggcggtgagattggtcccctcagattagtcggttcttg 41330021  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 44610174 - 44610218
Alignment:
Q  159 gcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||||||||| ||||||||||||| ||| ||||| ||||||    
T  44610174 gcaagtgggcggtgggattggtcccatcggattagtcggttcttg 44610218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 4621417 - 4621255
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  4621417 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 4621319  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  4621318 ggctttaaacggggtccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 4621255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 206
Target Start/End: Complemental strand, 7766907 - 7766742
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||| ||||| ||| ||||||||||||| ||   | |||| ||||||||||  || ||||| |||||||||||| |||||||||||| ||||| ||||||    
T  7766907 ggttagcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgctaatttcggtgggctaagtccatacagagct-tgctct 7766809  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttgaat 206  Q
    | |||||     |  |||||||||||||||||| |||||||||| || ||| |||||||||||||||    
T  7766808 gactttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttgaat 7766742  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 42 - 183
Target Start/End: Original strand, 8077664 - 8077806
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| |||||||||| ||| |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  8077664 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 8077762  T
Q  142 ggctttagctcag---ccccgcaagtgggcggtgtgattggtccc 183  Q
    |||||||   |||   |||||||||||||||||| ||||||||||    
T  8077763 ggcttta-aacagggcccccgcaagtgggcggtgggattggtccc 8077806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 15059582 - 15059420
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    ||||||||||  || ||||||||||||| ||   | |||| |||||||||| ||| |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  15059582 ggttggcttggaatcttggagtttgctcctccagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 15059484  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| ||  || ||||||||||||    
T  15059483 ggctttaaacggggtccccgcaagtgggcggtgagattggtcccctcgaattagtcgattcttg 15059420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 24674410 - 24674572
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  24674410 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 24674508  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| ||  || ||||||||||||    
T  24674509 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcgtattagtcgattcttg 24674572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 24122040 - 24122202
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| |||| |||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  24122040 ggttggcttgggatcttggggtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 24122138  T
Q  142 ggcttt-agctcagc-cccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||| | |   || ||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  24122139 ggctttaaacggggctcccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 24122202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 42 - 202
Target Start/End: Original strand, 1378915 - 1379075
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    ||||| |||| ||| ||||||||||||| ||   |||||| | ||||||||  || |||||  ||||||||||| |||||||||||| || || ||||||    
T  1378915 ggttgacttgggatcttggagtttgctcctccaaaagtctcatgttcgatttcctctggtgtcaatttcggtgggctaagtccatacagaact-tgctct 1379013  T
Q  142 ggctttagctcagcccc-gcaagtgggcggtgtgattggtcccatcagatcagtcgattctt 202  Q
    |||||||     ||||| |||||||| ||||| |||||||||| |||||| |||||||||||    
T  1379014 ggctttaaacgggcccccgcaagtggacggtgagattggtcccctcagattagtcgattctt 1379075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 9500533 - 9500373
Alignment:
Q  44 ttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctgg 143  Q
    |||||||| ||| ||||||||||||| |    | |||| |||||||||| ||| |||||  ||||||||||| |||||||||||| ||||| ||||||||    
T  9500533 ttggcttgggatcttggagtttgctccttcagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctgg 9500435  T
Q  144 cttt-agctcag-ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||| | |  || |||| ||||||||||||| |||||||| | || ||| ||||||||||||    
T  9500434 ctttaaacggagcccccacaagtgggcggtgagattggtctcttcggattagtcgattcttg 9500373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 1138596 - 1138695
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||||||| ||||||| ||||| |||| | ||||||||||||| | ||| | |||  ||||||||||||| |||||||||| ||||| ||||||    
T  1138596 ggttggcttgagatcttggagtgtgctcctctcaaggtcttaggttcgaatctctctagtgccaatttcggtggac-aagtccatacagagctttgctct 1138694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 183
Target Start/End: Original strand, 32729562 - 32729703
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| || |||||||||| |||| |||||| ||||||||||  || |||||  ||||||||||| | |||||||||| ||||| ||||||    
T  32729562 ggttggcttgggatcttcgagtttgctcctctcaaagtctcaggttcgattccctatggtgccaatttcggtgggc-aagtccatacagagct-tgctct 32729659  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtccc 183  Q
    |||||||  |  |  |||||||||||||||||| ||||| ||||    
T  32729660 ggctttaaatggggtccccgcaagtgggcggtgggattgatccc 32729703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 30677256 - 30677355
Alignment:
Q  105 aatttcggtggactaagtccatacggagctatgctctggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattctt 202  Q
    ||||||||||| |||||||||||| ||||| |||| ||||||||  |  |  |||||||||||||||||| |||||||||| |||||| ||||| |||||    
T  30677256 aatttcggtgggctaagtccatacagagct-tgctttggctttaaatgggacccccgcaagtgggcggtgggattggtcccctcagattagtcggttctt 30677354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 27455046 - 27454882
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || || ||  ||||||||||  |||||||||||| ||||| ||||||    
T  27455046 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattcactctgatgccaatttcggtgagctaagtccatacagagct-tgctct 27454948  T
Q  142 ggcttta----gctcagccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||    |  |  ||||||| |||||||||| |||||||||| || ||| ||||||||||||    
T  27454947 ggctttaaacgggccccccccgcatgtgggcggtgggattggtcccctcggattagtcgattcttg 27454882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 23734248 - 23734299
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttgaat 206  Q
    ||||||||||||||||||  ||||||||| |||||| |||||||||||||||    
T  23734248 ccccgcaagtgggcggtgaaattggtcccctcagattagtcgattcttgaat 23734299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 23741440 - 23741491
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttgaat 206  Q
    ||||||||||||||||||  ||||||||| |||||| |||||||||||||||    
T  23741440 ccccgcaagtgggcggtgaaattggtcccctcagattagtcgattcttgaat 23741491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 45859230 - 45859137
Alignment:
Q  34 catttggaggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatac 128  Q
    ||||||||| |||||||| ||| ||||||||||||| |||  | |||| ||||||||||  || |||||  ||||||||||| ||||||||||||    
T  45859230 catttggag-ttggcttgggatcttggagtttgctcctctagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 45859137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 12993946 - 12993998
Alignment:
Q  68 tcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaa 120  Q
    ||||||| |||||| |||||||||||||| ||||| |||||| ||||||||||    
T  12993946 tcttctcaaagtctcaggttcgattatctctggtgctaattttggtggactaa 12993998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 8254896 - 8254767
Alignment:
Q  78 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctttagctcag--ccccgcaagtgggcggtgtga 175  Q
    |||| |||||||||||||| |||||  ||||||||||| |||||| ||||| || || |||||||||||||     |  |||||||||||||||||| ||    
T  8254896 gtctcaggttcgattatctctggtgtcaatttcggtgggctaagttcatacagaact-tgctctggctttaaacggggcccccgcaagtgggcggtggga 8254798  T
Q  176 ttggtcccatcagatcagtcgattcttgaat 206  Q
    ||| |||| |   || |||||||||||||||    
T  8254797 ttgatccccttgaattagtcgattcttgaat 8254767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 46607827 - 46607932
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    ||||| |||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  46607827 ggttgacttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 46607925  T
Q  142 ggcttta 148  Q
    | |||||    
T  46607926 gacttta 46607932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 24216995 - 24217068
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtgg 115  Q
    ||||| |||| ||| ||||||| ||||| |||| | |||| ||||||||||| ||||||||  |||||||||||    
T  24216995 ggttgacttgggatcttggagtgtgctcctctcaaggtctcaggttcgattacctttggtgccaatttcggtgg 24217068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 36155954 - 36155906
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    ||||||| |||||||||| |||||||||| ||| || ||||||||||||    
T  36155954 ccccgcaggtgggcggtgggattggtcccttcaaattagtcgattcttg 36155906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 48699890 - 48699938
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||||||||||||| ||||| |||| || ||| ||||||||||||    
T  48699890 ccccgcaagtgggcggtgggattgttcccttcggattagtcgattcttg 48699938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 2618207 - 2618369
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | ||||| |||||||||  || |||||  |||||| |||| |||||||||||| ||||| ||||||    
T  2618207 ggttggcttgggatcttggagtttgctcctccagaggtcttgggttcgattccctctggtgccaatttcagtgggctaagtccatacagagct-tgctct 2618305  T
Q  142 ggcttt-agctcag-ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||| | |  || |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  2618306 ggctttaaacggagcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 2618369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 4718666 - 4718828
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| |    | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  4718666 ggttggcttgggatcttggagtttgctccttcagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 4718764  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  4718765 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 4718828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 34237835 - 34237673
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  34237835 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 34237737  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  ||||||||||| |||||| |||||||||| || ||| ||||||||||||    
T  34237736 ggctttaaacggggcccccgcaagtgagcggtgggattggtcccctcggattagtcgattcttg 34237673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 39349277 - 39349439
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  39349277 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 39349375  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| ||||| |||| || ||| ||||||||||||    
T  39349376 ggctttaaacggggcccccgcaagtgggcggtgggattgatcccctcggattagtcgattcttg 39349439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 3734803 - 3734641
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  3734803 ggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 3734705  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||| ||||| ||| |||||||||| || ||| ||||||||||||    
T  3734704 ggctttaaacggggcccccgcaaatgggcagtgggattggtcccctcggattagtcgattcttg 3734641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 21603251 - 21603413
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| || |||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| ||||| |||||| ||||| ||||||    
T  21603251 ggttggcttgggatcttagagtttgctcctccagaggtctcaggttcgattccctatggtgccaatttcggtgggctaagcccatacagagct-tgctct 21603349  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  21603350 ggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 21603413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 2166793 - 2166875
Alignment:
Q  117 ctaagtccatacggagctatgctctggctttagctcag-ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgatt 199  Q
    |||||||||||| ||||| |||||||||||||  | || |||||||||||||||||| |||||||||| |||||| ||||||||    
T  2166793 ctaagtccatacagagct-tgctctggctttaaataagaccccgcaagtgggcggtgggattggtcccctcagattagtcgatt 2166875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 28193495 - 28193657
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  |||||||||||  ||||||||||| ||||| ||||||    
T  28193495 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggttaagtccatacagagct-tgctct 28193593  T
Q  142 ggcttt-agctcagcccc-gcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||| | |   |||||  ||||||||||||| |||||||||| || ||| ||||||||||||    
T  28193594 ggctttaaacggggcccctacaagtgggcggtgggattggtcccctcggattagtcgattcttg 28193657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 27746515 - 27746410
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||| ||| ||| ||||||||||||| ||   | |||| ||||||||||  ||||||||  ||||||||||| |||||||||||| ||||| ||||||    
T  27746515 ggttggtttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctttggtgccaatttcggtgggctaagtccatacagagct-tgctct 27746417  T
Q  142 ggcttta 148  Q
    |||||||    
T  27746416 ggcttta 27746410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 8765704 - 8765544
Alignment:
Q  44 ttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctgg 143  Q
    |||||||||||| |||||||||||||  |   |  ||| ||||||||||  || |||||  ||||||| ||| |||||||||||| ||||| ||||||||    
T  8765704 ttggcttgagatcttggagtttgctcccccagagatctcaggttcgattccctctggtgccaatttcgatgggctaagtccatacagagct-tgctctgg 8765606  T
Q  144 ctttag-ctcagc-cccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||  |   || ||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  8765605 ctttaaacggggctcccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 8765544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 21667612 - 21667731
Alignment:
Q  83 aggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttt-agctcagc-cccgcaagtgggcggtgtgattggt 180  Q
    ||||||||||  |||||||| |||||||||||| |||||||||||| ||||| ||||||| |||| | |  |||  ||||||||||||||||  ||||||    
T  21667612 aggttcgatttcctttggtgctaatttcggtgggctaagtccatacagagct-tgctctgcctttaaacggagcatccgcaagtgggcggtggaattggt 21667710  T
Q  181 cccatcagatcagtcgattctt 202  Q
    ||| |||||| |||||||||||    
T  21667711 ccc-tcagattagtcgattctt 21667731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 15259550 - 15259424
Alignment:
Q  78 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctttagctcag--ccccgcaagtgggcggtgtga 175  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||     |  ||||||||||||||||||| |    
T  15259550 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgggcggtgtaa 15259452  T
Q  176 ttggtcccatcagatcagtcgattcttg 203  Q
    |||||||| ||  || ||||||||||||    
T  15259451 ttggtcccctcgaattagtcgattcttg 15259424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 14632975 - 14633137
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| ||||||| |||| ||||| ||||||    
T  14632975 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtctatacagagct-tgctct 14633073  T
Q  142 ggcttt-agctcagc-cccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||| | |  |||  || ||||||||||||| |||||||||| |  ||| ||||||||||||    
T  14633074 ggctttgaacggagcgtccacaagtgggcggtgggattggtccccttggattagtcgattcttg 14633137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 6953151 - 6953026
Alignment:
Q  78 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctttagctcag---ccccgcaagtgggcggtgtg 174  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||   |||   |||||||||| ||||||| |    
T  6953151 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta-aacagggcccccgcaagttggcggtggg 6953054  T
Q  175 attggtcccatcagatcagtcgattcttg 203  Q
    ||||||||| || ||| ||||||||||||    
T  6953053 attggtccc-tcggattagtcgattcttg 6953026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 2639477 - 2639429
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  2639477 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 2639429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 28964117 - 28964159
Alignment:
Q  105 aatttcggtggactaagtccatacggagctatgctctggcttta 148  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||    
T  28964117 aatttcggtgggctaagtccatacggagctatg-tctggcttta 28964159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 36848929 - 36848775
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    ||||| |||| | ||||||||||||||| |||| | || |||| ||| |||  || |||||  ||||||||||| |||||||||||||||| | |||||     
T  36848929 ggttgacttgggtttttggagtttgctcctctcaaggttttagattccatttcctctggtgccaatttcggtgggctaagtccatacggag-tttgctcg 36848831  T
Q  142 ggctttagctca-gccccgcaagtgggcggtgtgattggtcccatcagatcagtcg 196  Q
    |||||||  | | || || ||||||||||||| |||| ||||| ||| || |||||    
T  36848830 ggctttaaatgaggcaccacaagtgggcggtgggattagtcccctcaaattagtcg 36848775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 18128648 - 18128696
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||||||||||||| |||||||||  |||||| ||||| ||||||    
T  18128648 ccccgcaagtgggcggtgggattggtcctctcagattagtcggttcttg 18128696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 32879414 - 32879462
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||| ||||||||||||| |||||||||| || ||| ||||||||||||    
T  32879414 ccccacaagtgggcggtgggattggtcccctcggattagtcgattcttg 32879462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 34610867 - 34610705
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||  |||||||||||||| || ||   | |||| ||||||||||  || || ||  ||||||||||| ||||||| |||| ||||| ||||||    
T  34610867 ggttggcttaggattttggagtttgttcatccagatgtctgaggttcgattccctctgatgccaatttcggtggtctaagtctatacagagct-tgctct 34610769  T
Q  142 ggctttagctcagccc--cgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||    |||||  ||||||||||||||   ||||||||| ||  || ||||||||||||    
T  34610768 ggctttaaacgagcccctcgcaagtgggcggtagaattggtcccctcgaattagtcgattcttg 34610705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 161828 - 161988
Alignment:
Q  44 ttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctgg 143  Q
    |||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||||    
T  161828 ttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctgg 161926  T
Q  144 ctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    ||||   |  |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  161927 cttttaatggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 161988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 5262 - 5100
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  5262 ggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 5164  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||     |  |||||||| ||||||||| |||||||||| || ||| ||||||||||||    
T  5163 ggctttaaacggggcccccgcaaatgggcggtgggattggtcccctcggattagtcgattcttg 5100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 1236 - 1073
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || ||| |  ||||||||||| |||||||||||| ||||| ||||||    
T  1236 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggagccaatttcggtgggctaagtccatacagagct-tgctct 1138  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttga 204  Q
    |||||||  |  |  |||||||||||| ||||| |||||||||| ||  || |||||||||||||    
T  1137 ggctttaaatggggcccccgcaagtggacggtgggattggtcccctcgaattagtcgattcttga 1073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 9479 - 9316
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || ||| |  ||||||||||| |||||||||||| ||||| ||||||    
T  9479 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggagccaatttcggtgggctaagtccatacagagct-tgctct 9381  T
Q  142 ggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttga 204  Q
    |||||||  |  |  |||||||||||| ||||| |||||||||| ||  || |||||||||||||    
T  9380 ggctttaaatggggcccccgcaagtggacggtgggattggtcccctcgaattagtcgattcttga 9316  T

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Target: scaffold0366; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 12180 - 12018
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || ||| |  ||||||||||| |||||||||||| ||||| ||||||    
T  12180 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatttcctctggagccaatttcggtgggctaagtccatacagagct-tgctct 12082  T
Q  142 ggctttagct-cagccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttga 204  Q
    |||||||  |   ||||| ||||||| ||||| |||||||||| ||  || |||| ||||||||    
T  12081 ggctttaaatggggccccacaagtggacggtgggattggtcccctcgaattagtcaattcttga 12018  T

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Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 32368 - 32468
Alignment:
Q  105 aatttcggtggactaagtccatacggagctatgctctggctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattctt 202  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||  |  |  ||||||||||||| |||| |||||||||| || ||| |||||||||||    
T  32368 aatttcggtgggctaagtccatacagagct-tgctctggctttaaatgtggcccccgcaagtgggtggtgggattggtcccctcggattagtcgattctt 32466  T
Q  203 ga 204  Q
    ||    
T  32467 ga 32468  T

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Target: scaffold0070 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 40378 - 40503
Alignment:
Q  78 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctttagctcag--ccccgcaagtgggcggtgtga 175  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||     |  |||||||||||||||||| ||    
T  40378 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgggcggtggga 40476  T
Q  176 ttggtcccatcagatcagtcgattcttg 203  Q
    |||||||| || ||| ||||||||||||    
T  40477 ttggtccc-tcggattagtcgattcttg 40503  T

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Target: scaffold0459 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 10873 - 10711
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||||||||||||| ||   | |||| ||||||||||  || ||| |  ||||||||||| |||||||||||| ||||| ||||||    
T  10873 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatttcctctggagccaatttcggtgggctaagtccatacagagct-tgctct 10775  T
Q  142 ggctttagct-cagccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttga 204  Q
    |||||||  |   ||||| ||||||| ||||| |||||||||| ||  || |||| ||||||||    
T  10774 ggctttaaatggggccccacaagtggacggtgggattggtcccctcgaattagtcaattcttga 10711  T

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Target: scaffold0217 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 203
Target Start/End: Complemental strand, 7488 - 7327
Alignment:
Q  43 gttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctg 142  Q
    ||||||||| ||| ||||||||||||| ||   |  ||| ||||||||||  ||  ||||  ||||||||||| |||||||||||| ||||| | |||||    
T  7488 gttggcttgggatcttggagtttgctcctccagagatctcaggttcgattccctccggtgccaatttcggtgggctaagtccatacagagcttt-ctctg 7390  T
Q  143 gctttagctcag--ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    ||||||     |  |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  7389 gctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 7327  T

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Target: scaffold0028 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 27793 - 27890
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgct 139  Q
    |||||| ||| ||||||||||||||||| |||| | ||||  |||||||||  || |||||  |||||  |||| ||||||||||||| |||||||||    
T  27793 ggttggtttgggattttggagtttgctcctctcaaggtctcgggttcgattccctgtggtgccaatttgagtgggctaagtccatacgaagctatgct 27890  T

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Target: scaffold0102 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 39223 - 39271
Alignment:
Q  155 ccccgcaagtgggcggtgtgattggtcccatcagatcagtcgattcttg 203  Q
    |||||||||||||||||| |||||||||| || ||| ||||||||||||    
T  39223 ccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttg 39271  T

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Target: scaffold0026 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 182
Target Start/End: Complemental strand, 97546 - 97405
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctct 141  Q
    |||||||||| ||| ||| ||||||||| ||   | |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||    
T  97546 ggttggcttgggatcttgtagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctct 97448  T
Q  142 ggcttt--agctcagccccgcaagtgggcggtgtgattggtcc 182  Q
    | ||||  |    | |||||||||||||||||| |||||||||    
T  97447 gactttaaacgggacccccgcaagtgggcggtgggattggtcc 97405  T

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Target: scaffold0199 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 8587 - 8514
Alignment:
Q  42 ggttggcttgagattttggagtttgctcttctccaagtcttaggttcgattatctttggtggtaatttcggtgg 115  Q
    |||||||||| ||| ||||||||||||| ||   | |||| |||||||||||||| |||||  |||||||||||    
T  8587 ggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattatctctggtgccaatttcggtgg 8514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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