View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20943_low_24 (Length: 299)
Name: NF20943_low_24
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 2189268 - 2188992
Alignment:
| Q |
1 |
attttgatgacttcatgattaggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcatcggaaaccaactgccatatc |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2189268 |
attttgatgacttcatgattgggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcctcggaaaccaactgccatatc |
2189169 |
T |
|
| Q |
101 |
tcataatggccgtttttagaatttgaaagcataacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaaacatacaagtg |
200 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2189168 |
tcataatggccgtttttagtatttgaaagcacaacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaaacatacaagtg |
2189069 |
T |
|
| Q |
201 |
gcagctcaacatctccccattatcgaggccttctcccaagccaacgaatgtttcaaactcaatcaacagctcaagtt |
277 |
Q |
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| T |
2189068 |
gcagctcaacacctccccattatcgaggccttctcccaagccaacgaatgtttcaaactcaatcaacagctcaagtt |
2188992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 36614174 - 36614450
Alignment:
| Q |
1 |
attttgatgacttcatgattaggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcatcggaaaccaactgccatatc |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36614174 |
attttgatgacttcatgattgggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcctcggaaaccaactgccatatc |
36614273 |
T |
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| Q |
101 |
tcataatggccgtttttagaatttgaaagcataacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaaacatacaagtg |
200 |
Q |
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| T |
36614274 |
tcataatggccgtttttagtattggaaagcacaacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaaacatacaagtg |
36614373 |
T |
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| Q |
201 |
gcagctcaacatctccccattatcgaggccttctcccaagccaacgaatgtttcaaactcaatcaacagctcaagtt |
277 |
Q |
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| T |
36614374 |
gcagctcaacacctccccattatcgaggccttctcccaagccaacgaatgtttcaaactcaatcaacagctcaagtt |
36614450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 36647834 - 36648111
Alignment:
| Q |
1 |
attttgatgacttcatgattaggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcatcggaaaccaactgccatatc |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
36647834 |
attttgatgacttcatgattgggtttggtggaagcagcatatccaataatgggaaagcaagcattgagaagaataatcctcggaaaccaactgccatatc |
36647933 |
T |
|
| Q |
101 |
tcataatgg-ccgtttttagaatttgaaagcataacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaaacatacaagt |
199 |
Q |
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| T |
36647934 |
tcataatgatccgtttttagtatttgaaagcacaacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaaacatacaagt |
36648033 |
T |
|
| Q |
200 |
ggcagctcaacatctccccattatcgaggccttctcccaagccaacgaatgtttcaaactcaatcaacagctcaagtt |
277 |
Q |
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| T |
36648034 |
ggcagctcaacacctccccattatcgaggccttctcccaagccaacgaatgtttcaaactcaatcaacagctcaagtt |
36648111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 52 - 262
Target Start/End: Complemental strand, 40224323 - 40224102
Alignment:
| Q |
52 |
ggaaagcaaccattgagaagaataatcatcggaaaccaactgccatatctcataatgg-ccgtttttagaatttgaaa---------gcataacatcttc |
141 |
Q |
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||||||| | ||||||||||||||||| ||||||||||||||||| | | ||| ||| || ||||||| |||||||| ||| | ||||||| |
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| T |
40224323 |
ggaaagctagcattgagaagaataatcctcggaaaccaactgccacaccccatgatgatccatttttagtatttgaaacttcttcaagcacagcatcttc |
40224224 |
T |
|
| Q |
142 |
aaaatcattcctggactcattagagcaaatcactaagaatggttctaaacatacaagtggcagctcaa-catctccccattatcgaggccttctcccaag |
240 |
Q |
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| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||||||| ||||||| |||||||| |
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| T |
40224223 |
agaatcattcctggactcattagagcaaatcactaagaatagttcgaaacatacaagtggcagctcaagcacctccccattattgaggcctcctcccaag |
40224124 |
T |
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| Q |
241 |
ccaacgaatgtttcaaactcaa |
262 |
Q |
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||| ||||| ||||||||||| |
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| T |
40224123 |
ccagtgaatgcttcaaactcaa |
40224102 |
T |
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