View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20943_low_26 (Length: 264)
Name: NF20943_low_26
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 97 - 247
Target Start/End: Original strand, 29651381 - 29651533
Alignment:
| Q |
97 |
ttggtttcattcttctcaatcctgcaatagaagcaaacgaacaaaaaacctatttagcagaacaaaaaggaaaatggaaacagaacttgaaggcggcgac |
196 |
Q |
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| T |
29651381 |
ttggtttcattcttctcaatcctgcaatagaagcaaacgaacaaaaaacctatttagcagaacaaaaaggaaaatggaaacagaacttgaaggcggcgac |
29651480 |
T |
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| Q |
197 |
atgatgttgaacatgggttctgtttgtg--tgtgagagaggcaccgatagttg |
247 |
Q |
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| T |
29651481 |
atgatgttgaacatgggttctgtttgtgtctgtgagagaggcaccgatagttg |
29651533 |
T |
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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 29650322 - 29650414
Alignment:
| Q |
16 |
atagcaacctttaaa---tacataactaaataacagtctataaacagaactaaacttacttaccatcaacttcatggccactcattggtttca |
105 |
Q |
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| T |
29650322 |
atagcaacctttaaaaaatacataactcaataacagtctataaacagaactaaacttacttaccatcaacttcatggccactcattggtttca |
29650414 |
T |
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