View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20943_low_28 (Length: 256)
Name: NF20943_low_28
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_low_28 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 52066375 - 52066630
Alignment:
| Q |
1 |
gaagacatgacttgcagtgaaccaaagaaaagtttgcaatgaaagtctcacagaatggctgagaatttatgttcaatataatgagaagaaagaatacacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52066375 |
gaagacatgacttgcagtgaaccaaagaaaagtttgcaatgaaagtctcacagaatggctgagaatttatgttcaatataatgagaagaaagaatacacg |
52066474 |
T |
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| Q |
101 |
gccttttaatttatatggtactgagtgcaggttttgagcacaatgtttggataaaacagtttgtgttcatgttgtgataacttaatagtaatactctgta |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52066475 |
gccttttaatttatatggcactgagtgcaggttttgagcacaatgtttggataaaacagtttgtgttcatgttgtgataacttaatagtaatactctgta |
52066574 |
T |
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| Q |
201 |
atgtgccagcagatattggatagtatacttgaggacttatatatatgttggtttta |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52066575 |
atgtgccagcagatattggatagtatacttgaggacttatatatatgttggtttta |
52066630 |
T |
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