View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20943_low_3 (Length: 679)
Name: NF20943_low_3
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 574; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 1 - 665
Target Start/End: Original strand, 54794057 - 54794723
Alignment:
| Q |
1 |
tatatcgtggaacatatgaagcaacttaagcgcaagagaggataggcaaaaggtatttttcagaatttcagctcagctcttgttcagcattgcattgatt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
54794057 |
tatatcgtggaacatatgaagcaacttaagcgcaagagaggataggcgaaaggtatgtttcagaatttcagctgagctcttgttcagcattgcattgatt |
54794156 |
T |
|
| Q |
101 |
tttcattgat---ttcacagactaaaatagtaatttggaaagaatgacatggtaacccagttgcattcataggcacatgtaacaacttttagactcttgt |
197 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54794157 |
tttcattgatagcttcacatactaaaatagtaatttggaaagaatgacatggtaacccagttgcattcataggcacatgtaacaacttttagactcttgt |
54794256 |
T |
|
| Q |
198 |
cgggggcagcattaaataatatgctaatttaggtttatattgaaagtcgtctaatatctaattagttaatagcttaatagtgcattttaattcaatacaa |
297 |
Q |
| |
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| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794257 |
caggggcagcattaaataatatactaatttaggtttatattgaaagtcgtctaatatctaattagttaatagcttaatagtgcattttaattcaatacaa |
54794356 |
T |
|
| Q |
298 |
caatctactctacgggnnnnnnnnnnnnatgaacaatgaaatgattggttcccataaatgagtcaagggtgtgacttggttcagtttattcacactctat |
397 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794357 |
caatctactctacgg-ttttttttttttatgaacaatgaaatgattggttcccataaatgagtcaagggtgtgacttggttcagtttattcacactctat |
54794455 |
T |
|
| Q |
398 |
tctgtagtatctatttggcaatagtttaagtagtttataagttaaactagtagctaatagactacagttgaaagtttataaatgaaaagctagttgattg |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
54794456 |
tctgtagtatctatttggcaatagtttaagtagtttataagttaaactagtagctaatagactatagttgaaagtttataaatgaaaagctagttgattg |
54794555 |
T |
|
| Q |
498 |
atattcaagtggttgttaaaattaggaagcgagctaactgatcaacataaaatgacataaaagatatttgttgtaagctttaccaagagtaaccacaaac |
597 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794556 |
atattcaagtggttgttaaaattagtaagcgagctaactgatcaacataaaatgacataaaagatatttgttgtaagctttaccaagagtaaccacaaac |
54794655 |
T |
|
| Q |
598 |
tagtttacaagtttgtcaaataagataagtctatgtcaaacaaactcaagcttcacacctgacctatg |
665 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794656 |
taatttacaagtttgtcaaataagataagtctatgtcaaacaaactcaagcttcacacctgacctatg |
54794723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Original strand, 52286738 - 52287320
Alignment:
| Q |
1 |
tatatcgtggaacatatgaagcaacttaagcgcaagagaggataggcaaaaggtatttttcagaatttcagctcagctcttgttcagcattgcattgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| ||| |||||||||||||||||| |
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| T |
52286738 |
tatatcgtggaacatatgaagcaacttaagcgcaagagaggataggaaaaaggtatgtttcagaatttcagctgagcactttttcagcattgcattgatt |
52286837 |
T |
|
| Q |
101 |
tttcattgat---ttcacagactaaaatagtaatttggaaagaatgacatggtaacccagttgcattcataggcacatgtaacaacttttagactcttgt |
197 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52286838 |
tttcattgatagcttcacggactaaaatagtaatttggaaagaatgacatggtaacccagttgcaatcataggcacatgtaacaacttttagactcttgt |
52286937 |
T |
|
| Q |
198 |
cgggggcagcattaaataat--------atgctaatttaggtttatattgaaagtcgtctaatatcta--------------attagttaatagcttaat |
275 |
Q |
| |
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|||| ||||||||||||||| || |||||||| ||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
52286938 |
cgggtgcagcattaaataattaaataatatactaatttaagtttatattaaaagtcgtctaatatctagaatgagttatttaattagttaatagcttaat |
52287037 |
T |
|
| Q |
276 |
agtgcattttaattcaatacaacaatctactctacgggnnnnnnnnnnnnatgaacaatgaaatgattggttcccataaatgagtcaagggtgtgacttg |
375 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| | |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
52287038 |
agtgcattttaattcaatacatcaatctattctatg------atttttttatgaacaatgaaatgattggtttccataaatgagtcaagggtgtgacttg |
52287131 |
T |
|
| Q |
376 |
gttcagtttattcacactctattctgtagtatctatttggcaatagtttaagtagtttataagttaaactagtagctaatagactacagttgaaagttta |
475 |
Q |
| |
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| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52287132 |
ggtcagtttattcacactccattctgtagtatctatttggcaatagtttaagtagtttataagttaaactagtagctaatggactacagttgaaagttta |
52287231 |
T |
|
| Q |
476 |
taaatgaaaagctagttgattgatattcaagtggttgttaaaattaggaagcgagctaactgatcaacataaaatgacataaaagatat |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||| |
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|
| T |
52287232 |
taaatgaaaagctagttgattgatattcaagtggttgttaaaattagttagcaaactaactgatcaacataaaatgacataaaagatat |
52287320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 801901 - 802120
Alignment:
| Q |
1 |
tatatcgtggaacatatgaagcaacttaagcgcaagagagga---taggcaaaaggtatttttcagaatttcagctcagctcttgttcagcattgcattg |
97 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| |||||| |||||||||||||| ||||||| |||||| |||| |||||| |||||||| | |
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| T |
801901 |
tatattgtggatcatatgaagcaacttaagcgcaaaagaggaggataggcaaaaggtatgtttcagactttcagtggagcttctgttcaacattgcatgg |
802000 |
T |
|
| Q |
98 |
atttttcattgat---ttcacagactaaaatagtaatttggaaagaatgacatggtaacccagttgcattcataggcacatgtaacaacttttagactct |
194 |
Q |
| |
|
|| || ||||||| ||||| ||||||||| ||||||||| |||| || || ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
802001 |
atatt-cattgatagcttcactgactaaaatggtaatttgggaaga--gaaataataacccagttgcattcatatgcacatgtaacaacttttagactct |
802097 |
T |
|
| Q |
195 |
tgtcgggggcagcattaaataat |
217 |
Q |
| |
|
||||||| |||| |||||||||| |
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|
| T |
802098 |
tgtcgggtgcagtattaaataat |
802120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 572 - 665
Target Start/End: Original strand, 52287391 - 52287484
Alignment:
| Q |
572 |
aagctttaccaagagtaaccacaaactagtttacaagtttgtcaaataagataagtctatgtcaaacaaactcaagcttcacacctgacctatg |
665 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
52287391 |
aagctttaccacgagtaaccacaaattagtttacaagtttgtcaaataagataggtctatgtcaaacaaactcaagcttcacacctgacatatg |
52287484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 407 - 564
Target Start/End: Original strand, 802311 - 802468
Alignment:
| Q |
407 |
tctatttggcaatagtttaagtagtttataagttaaactagtagcta--atagactacagttgaaagtttataaatgaaaagctagttgattgatattca |
504 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||| |||| | ||||| || ||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
802311 |
tctatttggcaatagtgtaagtagtttataagttaa-ctaatagcaactatagattatagttgaaagtttataaatgaaaagctagttgattgcaattca |
802409 |
T |
|
| Q |
505 |
agtggttgttaaaattaggaagcgagctaactgatcaacataaaatgacataaaagatat |
564 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
802410 |
agtggttgttagaattaattggcgaactaactgataaacat-aaatgacatgaaagatat |
802468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 391
Target Start/End: Original strand, 802251 - 802309
Alignment:
| Q |
333 |
atgaaatgattggttcccataaatgagtcaagggtgtgacttggttcagtttattcaca |
391 |
Q |
| |
|
||||||||||||||| |||||| ||||| |||||| |||||||| ||| ||||||||| |
|
|
| T |
802251 |
atgaaatgattggtttccataattgagttaagggtatgacttgggtcaagttattcaca |
802309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 522
Target Start/End: Complemental strand, 34618543 - 34618484
Alignment:
| Q |
463 |
agttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattag |
522 |
Q |
| |
|
||||||||| ||||| |||||| |||||||||||||||| ||||| ||| ||||||||| |
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|
| T |
34618543 |
agttgaaagcttatagctgaaaaactagttgattgatattaaagtgtttggtaaaattag |
34618484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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