View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20943_low_31 (Length: 253)
Name: NF20943_low_31
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 60 - 236
Target Start/End: Original strand, 16699267 - 16699444
Alignment:
| Q |
60 |
gattaattcagttagtgtacatgtaagagggcattagttaagttaccggaagtgctatcgacgagtttgatgattttgttgagtgtttgtaagaagacaa |
159 |
Q |
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| T |
16699267 |
gattaattcagttagtgtacatgtaagagggcattagttaagttaccggaagtgctatcgacgagtttgatgattttgttgagtgtttgtaagaagacaa |
16699366 |
T |
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| Q |
160 |
aggagcttcagttccaattttt-cactaattgatttgttgataagaattcaattcatattatgtggatcaatatttaa |
236 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
16699367 |
aggagcttcagttccaatttttccactaattgattagttgataagaattcaattcatattatgtggatcaatatttaa |
16699444 |
T |
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