View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20943_low_33 (Length: 247)
Name: NF20943_low_33
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 50235423 - 50235661
Alignment:
| Q |
1 |
tctagagagaaaatgaaacaatattgattggaagggataaattaattaatttgttacaatatataatgtaacaccttgatttgtgcttatgggattcgtt |
100 |
Q |
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| T |
50235423 |
tctagagagaaaatgaaacaatattgattggaagggataaattaattaatttgttacaatatataatgtaacaccttgatttgtgcttatgggattcgtt |
50235522 |
T |
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| Q |
101 |
tgttcagattgaatatatctctcacnnnnnnnnaatgattgatgtggattctttacatacgttttatggtgcataactttatgtgttttgagtaaagaat |
200 |
Q |
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| T |
50235523 |
tgttcagattgaatatatctctcacttttttttaatgattgatgtggattctttacatacgttttatggtgcataactttatgtgttttgagtaaagaat |
50235622 |
T |
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| Q |
201 |
tcactattcaaaacggtgctagcctgcaatgtaggttct |
239 |
Q |
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| T |
50235623 |
tcactattcaaaacggtgctagcctgcaatgtaggttct |
50235661 |
T |
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