View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20943_low_36 (Length: 226)

Name: NF20943_low_36
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20943_low_36
NF20943_low_36
[»] chr1 (6 HSPs)
chr1 (1-226)||(6374650-6374875)
chr1 (146-202)||(6423461-6423517)
chr1 (112-189)||(6401037-6401116)
chr1 (4-79)||(6369768-6369843)
chr1 (100-189)||(6339669-6339757)
chr1 (100-181)||(6405608-6405689)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 6374650 - 6374875
Alignment:
Q  1 gtagtaagagtcgtaaaagactttatggatgtctgtaaattcatgctgtctctttgtacatgttttacacgacaccatttgtgccgtctcttcgtaaact 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6374650 gtagtaagagtcgtaaaagactttatagatgtctgtaaattcatgctgtctcttcgtacatgttttacacgacaccatttgtgccgtctcttcgtaaact 6374749  T
Q  101 catctctaatcaagatcatataatgtattaactatctatcactccactgctttttagttcatatcattgtgaatttgtgattgtctatataacattcagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6374750 catctctaatcaagatcatataatgtattaactatctatcactctactgctttttagttcatatcattgtgaatttgtgattgtctatataacattcagt 6374849  T
Q  201 agccttgaagagaagccacgcatgaa 226  Q
    ||||||||||||||||||||||||||    
T  6374850 agccttgaagagaagccacgcatgaa 6374875  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 6423461 - 6423517
Alignment:
Q  146 actgctttttagttcatatcattgtgaatttgtgattgtctatataacattcagtag 202  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6423461 actgatttttagttcatatcattgtgaatttgtgattgtctatataacattcagtag 6423517  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 6401037 - 6401116
Alignment:
Q  112 aagatcatataatgtattaactatctatcactccactgc--tttttagttcatatcattgtgaatttgtgattgtctata 189  Q
    ||||||||| |||||||||| ||||||| || ||||||   |||||| ||||||||||||||||||||||||| ||||||    
T  6401037 aagatcatagaatgtattaattatctattacgccactgtattttttatttcatatcattgtgaatttgtgattatctata 6401116  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 6369768 - 6369843
Alignment:
Q  4 gtaagagtcgtaaaagactttatggatgtctgtaaattcatgctgtctctttgtacatgttttacacgacaccatt 79  Q
    |||||||||| ||||||| |||||  |||| |||||||||||||||||||| ||| ||||||| |||||| |||||    
T  6369768 gtaagagtcgcaaaagacattatgcctgtcagtaaattcatgctgtctcttcgtatatgttttgcacgacgccatt 6369843  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 6339669 - 6339757
Alignment:
Q  100 tcatctctaatcaagatcatataatgtattaactatctatcactccactgctttttagttcatatcattgtgaatttgtgattgtctata 189  Q
    ||||| |||||||||||  || |||||||||| ||||||  |  ||||||||||| || || ||||||||| ||||||||||||||||||    
T  6339669 tcatcactaatcaagatggtagaatgtattaattatctactaagccactgctttt-agatcttatcattgtaaatttgtgattgtctata 6339757  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 6405608 - 6405689
Alignment:
Q  100 tcatctctaatcaagatcatataatgtattaactatctatcactccactgctttttagttcatatcattgtgaatttgtgat 181  Q
    ||||| ||||||||||| ||| |||| ||||| ||| ||| |  |||||| |||||| ||||||| ||| ||||||||||||    
T  6405608 tcatcactaatcaagattatagaatgcattaattatatattaggccactgttttttatttcatattattatgaatttgtgat 6405689  T

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