View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20943_low_38 (Length: 221)
Name: NF20943_low_38
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_low_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 15026264 - 15026455
Alignment:
| Q |
17 |
atgtttgtgtgtatatattctgattaaataactaaaatgcaggcacaatacttgaaaaacgatccagattacatgagctgcaaaaagaaagaatgcaaga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15026264 |
atgtttgtgtgtatatattctgattaaataactaaaatgtaggcacaatacttgaaaaacgatccagattacatgagctgcaaaaagaaagaatgcaaga |
15026363 |
T |
|
| Q |
117 |
aagaacagaatgggaaatgcagtgtgacaacttgtagtggttcaataaagtttcatgttatcaacattagaagtgatatagagtttgtgttc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15026364 |
aagaacagaatgggaaatgcagtgtgacaacttgtagtggttcaataaagtttcatgttatcaacattagaagtgatatagaatttgtgttc |
15026455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 52 - 208
Target Start/End: Original strand, 21365698 - 21365854
Alignment:
| Q |
52 |
aatgcaggcacaatacttgaaaaacgatccagattacatgagctgcaaaaagaaagaatgcaagaaagaacagaatgggaaatgcagtgtgacaacttgt |
151 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||| | || |||||||||||||||||||||||||| | ||||| ||||||| |||||||||||| |
|
|
| T |
21365698 |
aatgtaggcacagtacttgaaaaacgatccagattacctaagttgcaaaaagaaagaatgcaagaaagagcttaatggaaaatgcattgtgacaacttgc |
21365797 |
T |
|
| Q |
152 |
agtggttcaataaagtttcatgttatcaacattagaagtgatatagagtttgtgttc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
21365798 |
agtggttcaataaagtttcatgttatcaacataagaagtgacatagagtttgtgttc |
21365854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 26695899 - 26695999
Alignment:
| Q |
108 |
aatgcaagaaagaacagaatgggaaatgcagtgtgacaacttgtagtggttcaataaagtttcatgttatcaacattagaagtgatatagagtttgtgtt |
207 |
Q |
| |
|
||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||| |
|
|
| T |
26695899 |
aatgcaagaaagagcttaatgggaaatgcattgtgacaacttgtagtggttcaataaagtttcatgttacaaacataagaagtgacatagaatttgtgtt |
26695998 |
T |
|
| Q |
208 |
c |
208 |
Q |
| |
|
| |
|
|
| T |
26695999 |
c |
26695999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University