View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20943_low_4 (Length: 645)
Name: NF20943_low_4
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 141 - 635
Target Start/End: Original strand, 42218470 - 42218951
Alignment:
| Q |
141 |
ttgattaaaaaggcattttgaaaaaccttaattaagcatttatattacaaaagctgaaaataatggcagaatttcggagagaaggtgggaaaataaattc |
240 |
Q |
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| T |
42218470 |
ttgattaaaaaggcattttgaaaaaccttaattaagcatttatattacaaaagctgaaaataatggcagaatttcggagagaaggtgggaaaataaattc |
42218569 |
T |
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| Q |
241 |
tcttctccatgcatagttgcattgcatgcgctactaatcgtctttatttctcgttttgattactcaagaacattcaatcttctgcttcatacaacaaaca |
340 |
Q |
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| T |
42218570 |
tcttctccatgcatagttgcattgcatgcactactactcgtctttatttctcgttttgattactcaagaaccttcaatcttctgcttcatacaacaaaca |
42218669 |
T |
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| Q |
341 |
ttcaattttgtaaataaaaatttgaatcactgcgagagggaacttttttcataatctgaacccccaaatcagacggtaggaatcaatggatgattatacc |
440 |
Q |
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| T |
42218670 |
ttcaattttgtaaataaaaatttgaatcactgcgagatggaacttttttcataatctgaacccccaaatcagacggtaggaatcaatggatgattatacc |
42218769 |
T |
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| Q |
441 |
ttgtatgcaattttaatatgaattcttattctaataatatcttttgtgctttgatgaccctactccctaaatgcaattttgcaactccattttgcatgtg |
540 |
Q |
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| T |
42218770 |
ttgtatgcaattttaatgtgaattcttattctaatagtatcttttgtgctttgatgaccctactccctaaatg-------------ctattttgcatatg |
42218856 |
T |
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| Q |
541 |
cctttgctggattagcttactgataagggtttctggtaagtatctttatggaatgcatagttattgtgttctagtatagttcaatttcccctttg |
635 |
Q |
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| T |
42218857 |
cctttgctggattagcttactgataagggtttctggtaagtatctttatggaatgcataattattgggttctagtatagttcaatttcccctttg |
42218951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 42217540 - 42217636
Alignment:
| Q |
19 |
tcctatacatgatttgaacccatctttatcgaaaattcatgggaaaattaaatgaatcataagtgtttatattttcagattttaaaattcaaatgaa |
115 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42217540 |
tcctatacatgatttgaactcatctttatcgaaaattcatgggaaaattaaatgaatcataagtgtttatattttcagattttaaaattcaaatgaa |
42217636 |
T |
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