View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20943_low_5 (Length: 628)

Name: NF20943_low_5
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20943_low_5
NF20943_low_5
[»] chr1 (1 HSPs)
chr1 (11-613)||(10032666-10033260)
[»] chr4 (1 HSPs)
chr4 (9-306)||(41067936-41068233)
[»] chr3 (2 HSPs)
chr3 (9-290)||(8479570-8479851)
chr3 (90-264)||(10996811-10996984)
[»] chr5 (3 HSPs)
chr5 (9-290)||(19936349-19936630)
chr5 (373-609)||(29924688-29924930)
chr5 (321-374)||(29924242-29924295)
[»] chr6 (2 HSPs)
chr6 (474-607)||(15952551-15952684)
chr6 (334-437)||(15952720-15952823)
[»] scaffold0911 (1 HSPs)
scaffold0911 (106-305)||(2738-2934)
[»] chr2 (2 HSPs)
chr2 (459-613)||(1636777-1636931)
chr2 (373-437)||(1636685-1636749)
[»] scaffold0196 (1 HSPs)
scaffold0196 (178-306)||(224-352)
[»] chr8 (1 HSPs)
chr8 (100-301)||(26657175-26657379)


Alignment Details
Target: chr1 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 11 - 613
Target Start/End: Complemental strand, 10033260 - 10032666
Alignment:
Q  11 cagagacataagcgaattcaagaacagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcagtccagggaaatccaggttttgaaaaa 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10033260 cagaaacataagcgaattcaagaacagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcagtccagggaaatccaggttttgaaaaa 10033161  T
Q  111 tgtgcaaaatgacttggatttatgggctcgcattcgggagtatgatcaacgtatggcaagcgaaggattcacgtaagttttatctaaaaaacagcagcaa 210  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10033160 tgtgcaaaatgacttggatttatgggctcacattcgggagtatgatcaacgtatggcaagcgaaggattcacgcaagttttatctaaaaaacagcagcaa 10033061  T
Q  211 acattgaaaaagcatgttttagggaaagcttcgtaaaacacccgtgcgaagggttcaactcccccttctcaatgaatttcctttattggaacatccgc-g 309  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10033060 acattgaaaaagcatgttttagggaaagcttcgtacaacacccgtgcgaagggttcaactcccccttctcaatgaatttcctttattggaacatccgcgg 10032961  T
Q  310 tatagcaatgtcagtactatcatctgttaacggcttgaaggttggggtagatgcaattcaacaagatgaagtggtgatgatttctattgcttgcgttgtc 409  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10032960 tatagcaatgtcagtactatcatttgttaacggcttgaaggttggggtagatgcaattcaacaagatgaagtggtgatgatttctattgcttgccttgtc 10032861  T
Q  410 gttttgttcagtttacaaaagtatggaagtgatggaactagtaaagttgctgcattgtttacatggttctgttctcttgcgggcaatggtgtatacaatc 509  Q
    ||||||||||||||||||||||         ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10032860 gttttgttcagtttacaaaagt---------atggaacaagtaaagttgctgcattgtttacatggttctgttctcttgcgggcaatggtgtatacaatc 10032770  T
Q  510 ttgtcaaatatgacagtagcgtttttagggcttttaatcctattcacatctattatttctttgcaaggaattcaactaaagcatggtattctcttggggg 609  Q
    |||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10032769 ttgtcaaatatgacaacaacgtttttagggcttttaatcctattcacatctattatttctttgcaaggaattcaactaaagcatggtattctcttggggg 10032670  T

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Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 9 - 306
Target Start/End: Original strand, 41067936 - 41068233
Alignment:
Q  9 agcagagacataagcgaattcaagaacagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcagtccagggaaatccaggttttgaaa 108  Q
    |||||||||| |||| ||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  41067936 agcagagacagaagctaattcaagtgcagcagctaatgagtttactgctgatcaggtgcgtgaagtttcaattcagtccaaggaaatccaggtttcgaaa 41068035  T
Q  109 aatgtgcaaaatgacttggatttatgggctcgcattcgggagtatgatcaacgtatggcaagcgaaggattcacgtaagttttatctaaaaaacagcagc 208  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||| ||||||| ||||||||||||||||    
T  41068036 aatgttcaaaatgacttggatttatgggctcgcattcgggagtaagatcaacgtatggcagccgaaggattcacgcaagttttgtctaaaaaacagcagc 41068135  T
Q  209 aaacattgaaaaagcatgttttagggaaagcttcgtaaaacacccgtgcgaagggttcaactcccccttctcaatgaatttcctttattggaacatcc 306  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41068136 aaacattgaaaaagcaagttttagggaaagcttcgtacaacacccgtgcgaagggttcaactcccccttctcaatgaatttcctttattggaacatcc 41068233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 290
Target Start/End: Original strand, 8479570 - 8479851
Alignment:
Q  9 agcagagacataagcgaattcaagaacagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcagtccagggaaatccaggttttgaaa 108  Q
    |||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  8479570 agcagagacagaagcgaattcaagtgcagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcagtccaaggaaatccaggtttcgaaa 8479669  T
Q  109 aatgtgcaaaatgacttggatttatgggctcgcattcgggagtatgatcaacgtatggcaagcgaaggattcacgtaagttttatctaaaaaacagcagc 208  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| ||||||||||||||||    
T  8479670 aatgttcaaaatgacttggatttataggctcgcattcgggagtatgatcaacgtatggcagccgaaggattcacgcaagttttgtctaaaaaacagcagc 8479769  T
Q  209 aaacattgaaaaagcatgttttagggaaagcttcgtaaaacacccgtgcgaagggttcaactcccccttctcaatgaatttc 290  Q
    |||||||||||||||| |||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  8479770 aaacattgaaaaagcaagttttagggaaaacttcgtacaacacccgtgtgaagggttcaactcccccttctcaatgaatttc 8479851  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 264
Target Start/End: Original strand, 10996811 - 10996984
Alignment:
Q  90 ggaaatccaggttttgaaaaatgtgcaaaatgacttggatttatgggctcgcattcgggagtatgatcaacgtatggcaagcgaaggattcacgtaagtt 189  Q
    |||||| ||||||| ||||||| | ||||  |||||||||| |||||  || ||||| || ||||||||| | |||||   |||||  || ||| |||||    
T  10996811 ggaaattcaggtttcgaaaaatttccaaagggacttggatt-atgggtccgaattcgtgaatatgatcaatggatggcggacgaagattttacgcaagtt 10996909  T
Q  190 ttatctaaaaaacagcagcaaacattgaaaaagcatgttttagggaaagcttcgtaaaacacccgtgcgaagggt 264  Q
     |||| || |||||||||||  || |||||||| | || ||||| ||||| ||||| ||||||||||| ||||||    
T  10996910 ctatccaagaaacagcagcaggcagtgaaaaagaaagtgttaggaaaagcctcgtataacacccgtgcaaagggt 10996984  T

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Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 290
Target Start/End: Complemental strand, 19936630 - 19936349
Alignment:
Q  9 agcagagacataagcgaattcaagaacagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcagtccagggaaatccaggttttgaaa 108  Q
    ||||||| || |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||    
T  19936630 agcagaggcaaaagcgaattcaagtgcagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcaatccaaggaaatccaggtttcgaaa 19936531  T
Q  109 aatgtgcaaaatgacttggatttatgggctcgcattcgggagtatgatcaacgtatggcaagcgaaggattcacgtaagttttatctaaaaaacagcagc 208  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||   ||||||||||||| | ||||| ||||||||||||||||    
T  19936530 aatgttcaaaatgacttggatttatgggctcgcattcgggagtatgatcaatgtatggccgccgaaggattcacgcaggttttgtctaaaaaacagcagc 19936431  T
Q  209 aaacattgaaaaagcatgttttagggaaagcttcgtaaaacacccgtgcgaagggttcaactcccccttctcaatgaatttc 290  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19936430 aaacattgaaaaagcaagttttagggaaagcttcgtacaacacccgtgcgaagggttcaactcccccttctcaatgaatttc 19936349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 373 - 609
Target Start/End: Original strand, 29924688 - 29924930
Alignment:
Q  373 agatgaagtggtgatgatttctattgcttgcgttgtcgttttgttcagtttacaaaagtatggaa---gtga---tggaactagtaaagttgctgcattg 466  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||   || |   |||   |  |  ||   ||||||||    
T  29924688 agatgaagtggtgatgatttctgttgcttgccttgtcgttttgttcagtttacagaagtatggaacaagtaaagttgggcttgctgtaggacctgcattg 29924787  T
Q  467 tttacatggttctgttctcttgcgggcaatggtgtatacaatcttgtcaaatatgacagtagcgtttttagggcttttaatcctattcacatctattatt 566  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29924788 tttatatggttctgttctcttgcgggcaatggtgtatacaatcttgtcaaatatgacagcagcgtttttagggcttttaatcctattcacatctattatt 29924887  T
Q  567 tctttgcaaggaattcaactaaagcatggtattctcttggggg 609  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29924888 tctttgcaaggaattcaactaaagcatggtattctcttggggg 29924930  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 321 - 374
Target Start/End: Original strand, 29924242 - 29924295
Alignment:
Q  321 cagtactatcatctgttaacggcttgaaggttggggtagatgcaattcaacaag 374  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29924242 cagtactatcatctgttaatggcttgaaggttggggtagatgcaattcaacaag 29924295  T

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Target: chr6 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 474 - 607
Target Start/End: Complemental strand, 15952684 - 15952551
Alignment:
Q  474 ggttctgttctcttgcgggcaatggtgtatacaatcttgtcaaatatgacagtagcgtttttagggcttttaatcctattcacatctattatttctttgc 573  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15952684 ggttctgttctcttgcgggtaatggtgtatactatcttgtcaaatatgacagcagcgtttttagggcttttaatcctattcacatctattatttctttgc 15952585  T
Q  574 aaggaattcaactaaagcatggtattctcttggg 607  Q
    ||||||||||||||||||||||||||||||||||    
T  15952584 aaggaattcaactaaagcatggtattctcttggg 15952551  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 334 - 437
Target Start/End: Complemental strand, 15952823 - 15952720
Alignment:
Q  334 tgttaacggcttgaaggttggggtagatgcaattcaacaagatgaagtggtgatgatttctattgcttgcgttgtcgttttgttcagtttacaaaagtat 433  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||    
T  15952823 tgttaacggcttgaaggttggggtagatgcaattcgacaagatgaagtggtgatgatttctgttgcttgccttgtcgttttgttcagtttacagaagtat 15952724  T
Q  434 ggaa 437  Q
    ||||    
T  15952723 ggaa 15952720  T

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Target: scaffold0911 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 106 - 305
Target Start/End: Complemental strand, 2934 - 2738
Alignment:
Q  106 aaaaatgtgcaaaatgacttggatttatgggctcgcattcgggagtatgatcaacgtatggcaagcgaaggattcacgtaagttttatctaaaaaacagc 205  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||  ||||| |||||| |||| ||||| || || ||||    
T  2934 aaaaatgtacaaaatgacttggatttatgggctcgcattcgcgagtatgatcaacggatggcaacagaaggcttcacgcaagtgttatccaagaagcagc 2835  T
Q  206 agcaaacattgaaaaagcatgttttagggaaagcttcgtaaaacacccgtgcgaagggttcaactcccccttctcaatgaatttcctttattggaacatc 305  Q
    | ||||||||||||||||| ||| | || ||||||||||| || |||||||| ||||||   ||||| ||| |||||||| | |||||||||||||||||    
T  2834 aacaaacattgaaaaagcaagttctgggtaaagcttcgtataaaacccgtgcaaagggt---actcctcctcctcaatgagtgtcctttattggaacatc 2738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 459 - 613
Target Start/End: Original strand, 1636777 - 1636931
Alignment:
Q  459 ctgcattgtttacatggttctgttctcttgcgggcaatggtgtatacaatcttgtcaaatatgacagtagcgtttttagggcttttaatcctattcacat 558  Q
    |||| ||||| | |||||| ||||||||||| || |  ||  ||||||||||| ||||||||||||| || || || ||||| || ||||| ||||| ||    
T  1636777 ctgctttgttcatatggttttgttctcttgccggtatcgggatatacaatcttctcaaatatgacagaagtgtcttgagggcattcaatcccattcatat 1636876  T
Q  559 ctattatttctttgcaaggaattcaactaaagcatggtattctcttgggggttgt 613  Q
    ||| ||||||||    ||||| ||||||||||||||||||||||| |||||||||    
T  1636877 ctactatttcttcaagaggaactcaactaaagcatggtattctctcgggggttgt 1636931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 437
Target Start/End: Original strand, 1636685 - 1636749
Alignment:
Q  373 agatgaagtggtgatgatttctattgcttgcgttgtcgttttgttcagtttacaaaagtatggaa 437  Q
    |||||||||||||||||||||  |||| ||| |  | |||||||||||| |||||||||||||||    
T  1636685 agatgaagtggtgatgatttcagttgcctgcctgattgttttgttcagtgtacaaaagtatggaa 1636749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 178 - 306
Target Start/End: Original strand, 224 - 352
Alignment:
Q  178 ttcacgtaagttttatctaaaaaacagcagcaaacattgaaaaagcatgttttagggaaagcttcgtaaaacacccgtgcgaagggttcaactccccctt 277  Q
    |||||| |||| ||||| || || ||||| ||||||||||||||||| ||| | || ||||||||||| ||||||||||| ||||||    |||  | ||    
T  224 ttcacgcaagtgttatccaagaagcagcaacaaacattgaaaaagcaagttatgggtaaagcttcgtataacacccgtgcaaagggtaatcctcatcatt 323  T
Q  278 ctcaatgaatttcctttattggaacatcc 306  Q
    |||||||||| ||||||||||||||||||    
T  324 ctcaatgaatgtcctttattggaacatcc 352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 100 - 301
Target Start/End: Original strand, 26657175 - 26657379
Alignment:
Q  100 gttttgaaaaatgtgcaaaatgacttggatttatgggctcgcattcgggagtatgatcaacgtatggcaagcgaaggattcacgtaagttttatctaaaa 199  Q
    |||| ||| ||||| || ||||| |||||||||| ||| || ||||| || ||||||||||| |||||    ||||| |||||  |||||||||| ||||    
T  26657175 gtttcgaagaatgtccagaatgatttggatttataggcacgtattcgtgaatatgatcaacggatggcggatgaaggcttcacacaagttttatccaaaa 26657274  T
Q  200 aacagcagcaaacattgaaaaagcatgttttagggaaagcttcgtaaaacacccgtgcgaagggttcaactcccccttc-tca--atgaatttcctttat 296  Q
    | ||||| ||| || | |||| ||| || ||||| || ||| |||| |||||||| || |||||| |  ||||  |||| |||  |||||||||||||||    
T  26657275 agcagcaacaagcagttaaaaggcaagtgttaggaaaggctccgtacaacacccgggcaaagggtactcctccatcttcttcatcatgaatttcctttat 26657374  T
Q  297 tggaa 301  Q
    |||||    
T  26657375 tggaa 26657379  T

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