View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20943_low_6 (Length: 611)
Name: NF20943_low_6
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 19 - 597
Target Start/End: Complemental strand, 27680236 - 27679658
Alignment:
| Q |
19 |
tggtgtacaattctttgctttatttaacattgtttttggaaaatgcaggtatgtggcagggtttattgcaagcagtgtgtggaaattggtatgggagaac |
118 |
Q |
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| T |
27680236 |
tggtgtacaattctttgctttatttaacattgtttttggaaaatgcaggtatgtggcagggtttattgcaagcagtgtgtggaaattggtatgggagaac |
27680137 |
T |
|
| Q |
119 |
tgagagaaggaagaaagtgtattgagtgccttggaataagattcagccaaaggtaacaattttttaatcaaacgttttactccnnnnnnngtagtctctt |
218 |
Q |
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| T |
27680136 |
tgagagaaggaagaaagtgtattgagtgccttggactaagattcagccaaaggtaacaattttttaatcaaacgttttactccaaaaaaagtagtctctt |
27680037 |
T |
|
| Q |
219 |
aaatttgatttcctaaattagatccaaattccattgttcgatgagttgtgttatgtaacgtataaccaaaattgtttgacatataacatgagctagttca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27680036 |
aaatttgatttcctaaattagatccaaattccattgttagatgagttgtgttatgtaacgtataaccaaaattgtttgacatataacatgagctagttca |
27679937 |
T |
|
| Q |
319 |
tgaaatttcatctgtaaatgacaaaatcggtgtaaaagaattcagacatgccatttcataatcttgaaaagaaaaatactcaaccagatcacaaataatt |
418 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27679936 |
tgaaatttcatctgtaaatgacataatcggtgtaaaagaattcagacatgccatttcataatcttgaaaagaaaaatactcaaccagatcacaaataatt |
27679837 |
T |
|
| Q |
419 |
agggaaattcctaagccttcattaccatgatagattaatttctatttcggggggaagctttatgttcgtctaccttggatcagtacttgaaaatcatcta |
518 |
Q |
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| T |
27679836 |
agggaaattcctaagccttcattaccatgatagattaatttctatttcggggggaagttttacgttcatctaccttggatcagtgcttgaaaatcatcta |
27679737 |
T |
|
| Q |
519 |
aaacttcaacgatgattgataccggctttcagaaatagaagttcaatgtcttctttgttgtaatgactgagacactgat |
597 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27679736 |
aaacttcaacgatgattgataccagctttcagaaatagaagttcaatgtcttctttgttgtaatgactgagacactgat |
27679658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 32054220 - 32054109
Alignment:
| Q |
62 |
tgcaggtatgtggcagggtttattgcaagcag-tgtgtggaaattggtatgggagaactgagagaaggaagaaagtgtattgagtgccttggaataagat |
160 |
Q |
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|||||||||| ||||| |||||||| | |||| |||||| |||| || ||||||||| || |||||||||||||||||| || ||||||||| | | || |
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| T |
32054220 |
tgcaggtatgcggcagagtttattgta-gcagatgtgtgaaaataggaatgggagaaatggtagaaggaagaaagtgtatagaatgccttggattgaaat |
32054122 |
T |
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| Q |
161 |
tcagccaaaggta |
173 |
Q |
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| T |
32054121 |
tcagccaaaggta |
32054109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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