View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20943_low_7 (Length: 595)
Name: NF20943_low_7
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 13 - 580
Target Start/End: Complemental strand, 9769267 - 9768699
Alignment:
| Q |
13 |
ataatacttatgtcactcttcattaatctaatcagggtggttccatattaaaacaacagtctcctggccctgttgctaagaataatatccaagttcatct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9769267 |
ataatacttatgtcactcttcattaatctaatcagggtggttccatattaaaacaacagtctcctggccctgttgctaagaataatatccaatttcatct |
9769168 |
T |
|
| Q |
113 |
tttgttcatgtatttacgtctgatttcaaacatattctatttctatatgggtaaacaattataggtgtgcatgaattgctttgtgtttgcccaaccagtg |
212 |
Q |
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||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9769167 |
tttgttcatgtatttacgtttgatttcaaaaatattctatttctatatgggtaaacaattataggtgtgcatgaattgctttgtgtttgctcaaccagtg |
9769068 |
T |
|
| Q |
213 |
atgatttttacaattatttttgcgcaccactaatatctttttctaattttatgagtgttgttt-cagtcatacgttgctctcaaaatccagaaaagtgca |
311 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9769067 |
atgattttttcaattatttttgcgcaccactaatatctttttctaattttatgattgttgttttcagtcatacgttgctctcaaaatccagaaaagtgca |
9768968 |
T |
|
| Q |
312 |
gccgagtttgttcaggccgcccttcatgagatcaacgttctttcatccattgctgatggggacccatcaaattcaaagtttgttgtccaattgattgata |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9768967 |
gccgagtttgttcaggccgcccttcatgagatcaacgttctttcatccattgctgatggggacccatcaaattcaaagtttgttgtccaattgattgata |
9768868 |
T |
|
| Q |
412 |
actttaagcacacaggtccaaatgggcagcaccattgcatggtccttgagtttcttggcgatagcttgcttcgtttgatcaaatatagccattacaaagg |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9768867 |
actttaagcacacaggtccaaatgggcagcaccattgcatggtccttgagtttcttggcgatagcttgcttcgtttgatcaaatatagccattacaaagg |
9768768 |
T |
|
| Q |
512 |
tcttccattgaataaagttagagagatttgtaaatacattttgattggtttggattacttgcatagtga |
580 |
Q |
| |
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| T |
9768767 |
tcttccattgaataaagttagagagatttgtaaatacattttgattggtttggattacttgcatagtga |
9768699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 5e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 275 - 577
Target Start/End: Original strand, 31021155 - 31021457
Alignment:
| Q |
275 |
tcagtcatacgttgctctcaaaatccagaaaagtgcagccgagtttgttcaggccgcccttcatgagatcaacgttctttcatccattgctgatggggac |
374 |
Q |
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|||| |||| ||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||||| | ||||||||||||||||||||||| | | |
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| T |
31021155 |
tcagacatatgttgctctcaaaatccagaaaagtgcagcacagtttgttcaggctgctcttcacgagatagatgttctttcatccattgctgatggcgcc |
31021254 |
T |
|
| Q |
375 |
ccatcaaattcaaagtttgttgtccaattgattgataactttaagcacacaggtccaaatgggcagcaccattgcatggtccttgagtttcttggcgata |
474 |
Q |
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|| ||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||| |||||||| |||||||| || ||||||||||| |||| |
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| T |
31021255 |
ccttcaaattcaaaatttgttgtccaattgatcgaccactttaagcacacaggtcctaatggccagcaccaatgcatggtactcgagtttcttggagata |
31021354 |
T |
|
| Q |
475 |
gcttgcttcgtttgatcaaatatagccattacaaaggtcttccattgaataaagttagagagatttgtaaatacattttgattggtttggattacttgca |
574 |
Q |
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||||||| ||| | ||| ||| | || ||||||||||||||| |||||||||| || ||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
31021355 |
gcttgctacgtctagtcagatacaaccgttacaaaggtcttccgatgaataaagtcagggagatttgtcaatgcattttgattggtttggattacttgca |
31021454 |
T |
|
| Q |
575 |
tag |
577 |
Q |
| |
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||| |
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|
| T |
31021455 |
tag |
31021457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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