View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20943_low_8 (Length: 573)

Name: NF20943_low_8
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20943_low_8
NF20943_low_8
[»] chr5 (29 HSPs)
chr5 (19-563)||(29224748-29225296)
chr5 (403-454)||(24498579-24498630)
chr5 (389-447)||(18981190-18981248)
chr5 (402-452)||(26675960-26676010)
chr5 (402-452)||(26947568-26947618)
chr5 (372-453)||(5107229-5107310)
chr5 (394-443)||(7713538-7713587)
chr5 (389-454)||(18872662-18872727)
chr5 (391-455)||(35131109-35131173)
chr5 (399-439)||(42659587-42659627)
chr5 (380-423)||(18697776-18697818)
chr5 (380-447)||(25603992-25604059)
chr5 (372-454)||(11637556-11637638)
chr5 (394-452)||(13864341-13864399)
chr5 (400-454)||(29695010-29695064)
chr5 (405-447)||(36170057-36170099)
chr5 (380-454)||(40715941-40716015)
chr5 (410-444)||(42178827-42178861)
chr5 (403-444)||(5614770-5614811)
chr5 (391-452)||(8544992-8545053)
chr5 (391-452)||(23118054-23118115)
chr5 (380-447)||(25861939-25862003)
chr5 (413-454)||(25928909-25928950)
chr5 (211-248)||(29146715-29146752)
chr5 (403-452)||(36623189-36623238)
chr5 (400-452)||(26034620-26034672)
chr5 (394-454)||(33369419-33369479)
chr5 (391-443)||(37073771-37073823)
chr5 (392-444)||(38370755-38370807)
[»] chr1 (25 HSPs)
chr1 (391-454)||(42146310-42146373)
chr1 (391-455)||(51046136-51046200)
chr1 (380-447)||(47719099-47719166)
chr1 (403-448)||(4859084-4859129)
chr1 (395-447)||(31759900-31759952)
chr1 (395-444)||(44287148-44287197)
chr1 (391-447)||(37050931-37050987)
chr1 (372-420)||(38000073-38000121)
chr1 (380-447)||(11410629-11410696)
chr1 (380-447)||(51067886-51067953)
chr1 (405-455)||(41182623-41182673)
chr1 (380-454)||(41973250-41973324)
chr1 (391-425)||(46012399-46012433)
chr1 (385-446)||(5468851-5468912)
chr1 (402-443)||(13953888-13953929)
chr1 (399-452)||(14556569-14556622)
chr1 (394-447)||(23045193-23045246)
chr1 (389-454)||(28213908-28213973)
chr1 (397-454)||(48681942-48681999)
chr1 (405-454)||(49843429-49843478)
chr1 (395-427)||(422569-422601)
chr1 (391-455)||(2613716-2613780)
chr1 (391-447)||(32433098-32433154)
chr1 (403-447)||(47071973-47072017)
chr1 (394-454)||(49222811-49222871)
[»] chr4 (29 HSPs)
chr4 (372-452)||(50380820-50380900)
chr4 (391-452)||(6459927-6459988)
chr4 (391-454)||(51436609-51436672)
chr4 (394-452)||(36569170-36569228)
chr4 (394-448)||(39146643-39146697)
chr4 (394-454)||(14202485-14202545)
chr4 (403-447)||(39595952-39595996)
chr4 (391-443)||(41536928-41536980)
chr4 (400-447)||(47704584-47704631)
chr4 (409-447)||(20515727-20515765)
chr4 (408-454)||(24837493-24837539)
chr4 (392-446)||(37422194-37422248)
chr4 (405-447)||(46779139-46779181)
chr4 (394-444)||(50668345-50668395)
chr4 (403-460)||(2587715-2587772)
chr4 (403-452)||(32923245-32923294)
chr4 (401-454)||(38340333-38340386)
chr4 (394-447)||(42773054-42773107)
chr4 (402-447)||(44857200-44857245)
chr4 (394-447)||(49952575-49952628)
chr4 (402-447)||(54587902-54587947)
chr4 (391-447)||(7371551-7371607)
chr4 (405-453)||(8737725-8737773)
chr4 (366-454)||(25593541-25593628)
chr4 (403-443)||(37381246-37381286)
chr4 (394-454)||(43374278-43374338)
chr4 (399-443)||(52693807-52693851)
chr4 (387-447)||(52699375-52699435)
chr4 (411-455)||(56309323-56309367)
[»] chr2 (27 HSPs)
chr2 (380-454)||(44026603-44026677)
chr2 (394-446)||(19159944-19159996)
chr2 (380-456)||(19967411-19967487)
chr2 (394-454)||(38334639-38334699)
chr2 (391-454)||(8761567-8761630)
chr2 (380-454)||(20455886-20455960)
chr2 (406-455)||(10977077-10977126)
chr2 (389-434)||(17394689-17394734)
chr2 (410-454)||(11846392-11846436)
chr2 (400-455)||(3196554-3196609)
chr2 (403-454)||(18678132-18678183)
chr2 (399-454)||(31837947-31838002)
chr2 (391-454)||(33063981-33064044)
chr2 (380-447)||(41682380-41682446)
chr2 (394-452)||(9519720-9519778)
chr2 (392-454)||(13196695-13196757)
chr2 (380-454)||(22523004-22523078)
chr2 (372-454)||(34977199-34977281)
chr2 (372-438)||(41542967-41543033)
chr2 (394-447)||(5168585-5168638)
chr2 (394-455)||(7537104-7537165)
chr2 (393-442)||(7539037-7539086)
chr2 (394-447)||(7772466-7772519)
chr2 (405-454)||(8775265-8775314)
chr2 (403-447)||(20239345-20239389)
chr2 (411-447)||(38622941-38622977)
chr2 (380-444)||(41853370-41853434)
[»] chr8 (25 HSPs)
chr8 (399-444)||(3456832-3456877)
chr8 (398-454)||(40316851-40316907)
chr8 (380-454)||(7380039-7380113)
chr8 (365-455)||(8717452-8717542)
chr8 (380-454)||(35682684-35682758)
chr8 (372-447)||(574386-574461)
chr8 (400-455)||(18959143-18959198)
chr8 (385-444)||(26695302-26695361)
chr8 (380-447)||(40795379-40795446)
chr8 (380-454)||(6447184-6447258)
chr8 (403-457)||(39975482-39975536)
chr8 (403-445)||(41603065-41603107)
chr8 (401-454)||(10732788-10732841)
chr8 (399-444)||(12133548-12133593)
chr8 (386-443)||(38489200-38489257)
chr8 (394-447)||(45049577-45049630)
chr8 (402-454)||(1230675-1230727)
chr8 (391-423)||(11670777-11670809)
chr8 (403-459)||(17062354-17062410)
chr8 (403-459)||(17585948-17586004)
chr8 (382-446)||(24687782-24687844)
chr8 (394-454)||(27718900-27718960)
chr8 (380-452)||(28580941-28581013)
chr8 (394-454)||(29293172-29293232)
chr8 (403-447)||(41625196-41625240)
[»] chr7 (24 HSPs)
chr7 (391-452)||(429181-429242)
chr7 (372-444)||(27270240-27270312)
chr7 (380-447)||(9893072-9893139)
chr7 (403-454)||(32496881-32496932)
chr7 (380-447)||(34000264-34000331)
chr7 (392-447)||(47960898-47960953)
chr7 (394-444)||(32855525-32855575)
chr7 (380-454)||(39706615-39706689)
chr7 (401-443)||(44639647-44639689)
chr7 (394-447)||(41132446-41132499)
chr7 (380-424)||(16198408-16198452)
chr7 (372-444)||(27263346-27263418)
chr7 (406-446)||(35751389-35751429)
chr7 (403-446)||(21580819-21580862)
chr7 (380-447)||(48527192-48527259)
chr7 (372-454)||(4905271-4905353)
chr7 (374-455)||(2622319-2622400)
chr7 (372-425)||(2962710-2962763)
chr7 (393-434)||(23205367-23205408)
chr7 (410-454)||(12167402-12167446)
chr7 (403-447)||(15015243-15015287)
chr7 (399-439)||(24099246-24099286)
chr7 (394-454)||(29726795-29726855)
chr7 (380-444)||(48837872-48837936)
[»] chr6 (16 HSPs)
chr6 (405-454)||(9311947-9311996)
chr6 (394-454)||(13496111-13496171)
chr6 (391-454)||(9665305-9665368)
chr6 (380-455)||(28951393-28951468)
chr6 (380-454)||(8916466-8916540)
chr6 (394-447)||(12904323-12904376)
chr6 (381-457)||(2213289-2213365)
chr6 (380-447)||(8629688-8629755)
chr6 (391-454)||(10902335-10902398)
chr6 (391-454)||(11148207-11148270)
chr6 (381-454)||(12336319-12336392)
chr6 (394-447)||(23635720-23635773)
chr6 (394-455)||(24438288-24438349)
chr6 (391-439)||(6283946-6283994)
chr6 (403-447)||(9977059-9977103)
chr6 (394-430)||(12459747-12459783)
[»] chr3 (15 HSPs)
chr3 (383-454)||(21331412-21331483)
chr3 (394-448)||(17755122-17755176)
chr3 (394-448)||(19056442-19056496)
chr3 (403-452)||(10843796-10843845)
chr3 (390-454)||(53633619-53633683)
chr3 (391-454)||(7827503-7827566)
chr3 (389-452)||(46337231-46337294)
chr3 (389-447)||(47099036-47099094)
chr3 (372-454)||(48376830-48376912)
chr3 (403-444)||(21160057-21160098)
chr3 (402-443)||(43630432-43630473)
chr3 (386-419)||(45254261-45254294)
chr3 (380-444)||(1743982-1744046)
chr3 (391-447)||(5941297-5941353)
chr3 (403-447)||(42784959-42785003)
[»] scaffold0070 (1 HSPs)
scaffold0070 (389-446)||(42933-42990)
[»] scaffold0445 (1 HSPs)
scaffold0445 (380-447)||(4472-4539)
[»] scaffold0312 (1 HSPs)
scaffold0312 (395-427)||(7971-8003)
[»] scaffold0062 (1 HSPs)
scaffold0062 (380-452)||(7471-7542)
[»] scaffold0008 (1 HSPs)
scaffold0008 (403-447)||(122893-122937)


Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 19 - 563
Target Start/End: Original strand, 29224748 - 29225296
Alignment:
Q  19 aaatgtttgtggtaaaacaaagtacccgcatgcacaattataatgactaattctttaaagtaagtgagatataattttatctaatacttgtgctacacta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29224748 aaatgtttgtggtaaaacaaagtacccgcatgcacaattataatgactaattctttaaagtaagtgagatataattttatctaatacttgtgctacacta 29224847  T
Q  119 ttttgatatacatttccaattttatttagtactacatttgaggttttgttaggactgtcaactagttccctttcctatgtctaggatacttgtaaacatt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29224848 ttttgatatacatttccaattttatttagtactacatttgaggttttgttaggactgtcaactagttccctttcctatgtctaggatacttg-aaacatt 29224946  T
Q  219 tattgttctacttttgtttccttaattgatcttatatgagaaacatgttggctgtaagaaacatagcatagcaaatcaggatgttgacatggattagcat 318  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29224947 tattgttctacttttgtttccttaattgatgttatatgagaaacatgttggctgtaagaaacatagcatagcaaatcaggatgttgacatggattagcat 29225046  T
Q  319 ttcaagataaaataatgctgaaaatactaattattttttacatggaatatttattttttacggtggccgagattcgaactccgaaccttacatatattat 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |  |||||||||  | |||||||||||||||||    
T  29225047 ttcaagataaaataatgctgaaaatactaattattttttacatggaatatttttcttttatggtggtcaggattcgaacctcaaaccttacatatattat 29225146  T
Q  419 gtattattcatatcaattgagttaagctcgcgaggatttttac---------ttgcatgagaagtcaacatagcaacacggaaaataaatgagagtggat 509  Q
      ||| | |||    |||||||||| ||| |||||| ||||||         || |||||||||||||||||||||||| ||||||||||||| ||||||    
T  29225147 acattgtccat----attgagttaaactcacgaggacttttacattgaatatttacatgagaagtcaacatagcaacactgaaaataaatgagtgtggat 29225242  T
Q  510 tcattgattactaggattcattgattacttttctaccttatgtaccaccctatg 563  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29225243 tcattgattactaggattcattgattacttttctaccttatgtaccactctatg 29225296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 24498630 - 24498579
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||| ||||||    
T  24498630 accttacatattttatgcattattcatatcaactgagttaagctcacgagga 24498579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 447
Target Start/End: Original strand, 18981190 - 18981248
Alignment:
Q  389 gattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||||||| ||||||||||||||||||||| ||| ||| || || |||||||||||||    
T  18981190 gattcgaaccccgaaccttacatatattatgcattgttcttaccatttgagttaagctc 18981248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 452
Target Start/End: Original strand, 26675960 - 26676010
Alignment:
Q  402 aaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 452  Q
    |||||||||||||||||||||||||| || ||||||| |||||||| ||||    
T  26675960 aaccttacatatattatgtattattcctaacaattgaattaagctcacgag 26676010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 452
Target Start/End: Original strand, 26947568 - 26947618
Alignment:
Q  402 aaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 452  Q
    |||||||||||||||||||||||||| || ||||||| |||||||| ||||    
T  26947568 aaccttacatatattatgtattattcctaacaattgaattaagctcacgag 26947618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 372 - 453
Target Start/End: Original strand, 5107229 - 5107310
Alignment:
Q  372 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagg 453  Q
    ||||||| ||||| || | |||||||  || ||||| ||||||||||| |||||||||| ||| |||||||||||| |||||    
T  5107229 ttttttatggtggtcggggttcgaacctcggaccttgcatatattatgcattattcataccaactgagttaagctcacgagg 5107310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 7713587 - 7713538
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaa 443  Q
    ||||||| |||||| ||||||||||| |||||||||||||| ||||||||    
T  7713587 gaactccaaaccttgcatatattatgcattattcatatcaactgagttaa 7713538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 454
Target Start/End: Complemental strand, 18872727 - 18872662
Alignment:
Q  389 gattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||||| ||||||||| ||||||||||| ||| | |||| ||| |||||||||||| ||||||    
T  18872727 gattcgaaccccgaaccttgcatatattatgcattttccataacaagtgagttaagctcacgagga 18872662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 455
Target Start/End: Complemental strand, 35131173 - 35131109
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 455  Q
    ||||||||||||||||| ||||| |||||||||||  ||| ||| |||||||||||  |||||||    
T  35131173 ttcgaactccgaaccttgcatattttatgtattatcgataacaactgagttaagcttacgaggat 35131109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 439
Target Start/End: Complemental strand, 42659627 - 42659587
Alignment:
Q  399 ccgaaccttacatatattatgtattattcatatcaattgag 439  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  42659627 ccgaaccttacatatattatgcattatttatatcaattgag 42659587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 18697818 - 18697776
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtatt 423  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||    
T  18697818 ggtggccga-attcgaactccgaacgttacatatattatgtatt 18697776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 447
Target Start/End: Original strand, 25603992 - 25604059
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||||||| ||||||||| ||||||||| ||||||||||| | | | |||||||| |||| |||||||    
T  25603992 ggtggccgggattcgaaccccgaaccttgcatatattatgcactgtccatatcaactgagctaagctc 25604059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 454
Target Start/End: Original strand, 11637556 - 11637638
Alignment:
Q  372 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||| ||||| || | ||||||| ||||||||| ||||| ||||| ||| | |||| ||| |||||||||||| ||||||    
T  11637556 ttttttatggtggtcggggttcgaaccccgaaccttgcatattttatgcattgtccataccaactgagttaagctcacgagga 11637638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 452
Target Start/End: Complemental strand, 13864399 - 13864341
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 452  Q
    |||| ||| ||||| ||||||||||||||| |||||| ||| |||||||||||| ||||    
T  13864399 gaaccccggaccttgcatatattatgtattgttcataccaactgagttaagctcacgag 13864341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 454
Target Start/End: Complemental strand, 29695064 - 29695010
Alignment:
Q  400 cgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||||||||||||||| ||| | |||||||| ||||||||| || ||||||    
T  29695064 cgaaccttacatatattatgcattgtccatatcaactgagttaaggtcacgagga 29695010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 447
Target Start/End: Complemental strand, 36170099 - 36170057
Alignment:
Q  405 cttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||||||||||||| ||||||| || ||||||||||||||||    
T  36170099 cttacatatattatgcattattcctagcaattgagttaagctc 36170057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 454
Target Start/End: Original strand, 40715941 - 40716015
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||| | || |||| ||| ||||| ||||||||||| ||| | ||||||||||||| ||||||| ||||||    
T  40715941 ggtggccggggtttgaaccccggaccttgcatatattatgcattgtccatatcaattgagctaagctcacgagga 40716015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 444
Target Start/End: Original strand, 42178827 - 42178861
Alignment:
Q  410 atatattatgtattattcatatcaattgagttaag 444  Q
    |||||||||||||||||| ||||||||||||||||    
T  42178827 atatattatgtattattcttatcaattgagttaag 42178861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 444
Target Start/End: Complemental strand, 5614811 - 5614770
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaag 444  Q
    ||||||||||||||||| ||||| |||||||| |||||||||    
T  5614811 accttacatatattatgcattatccatatcaactgagttaag 5614770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 452
Target Start/End: Original strand, 8544992 - 8545053
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 452  Q
    ||||||||||| ||||| ||||||||||| ||| | | |||||| |||||||||||| ||||    
T  8544992 ttcgaactccggaccttgcatatattatgcattgtccttatcaactgagttaagctcacgag 8545053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 452
Target Start/End: Original strand, 23118054 - 23118115
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 452  Q
    ||||||| || |||||||||||||||||| ||| | | |||||| |||||||||||| ||||    
T  23118054 ttcgaaccccaaaccttacatatattatgcattgtccttatcaactgagttaagctcacgag 23118115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 447
Target Start/End: Original strand, 25861939 - 25862003
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||||||| | || |||||||| ||||||||||||||||   ||||||||| |||||||| |||||||    
T  25861939 ggtggccggggtttgaactccggaccttacatatattat---ttattcataccaattgagctaagctc 25862003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 454
Target Start/End: Complemental strand, 25928950 - 25928909
Alignment:
Q  413 tattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||||||| | ||||||||||||||||||||| ||||||    
T  25928950 tattatgtattgtccatatcaattgagttaagctcacgagga 25928909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 29146752 - 29146715
Alignment:
Q  211 taaacatttattgttctacttttgtttccttaattgat 248  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  29146752 taaacatttatttttctacttttgtttccttaaatgat 29146715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 452
Target Start/End: Original strand, 36623189 - 36623238
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctcgcgag 452  Q
    ||||| ||||||||||| ||||||| |||||| |||||||||||| ||||    
T  36623189 accttgcatatattatgcattattcttatcaactgagttaagctcacgag 36623238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 452
Target Start/End: Original strand, 26034620 - 26034672
Alignment:
Q  400 cgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 452  Q
    |||||||| ||||||||||| ||| |||||| ||| |||||||||||| ||||    
T  26034620 cgaacctttcatatattatgcattgttcataccaactgagttaagctcacgag 26034672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 454
Target Start/End: Original strand, 33369419 - 33369479
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||| |||||| || |||| |||||||||| |||||| ||| |||||||||||| ||||||    
T  33369419 gaaccccgaacgttgcatacattatgtattgttcataccaactgagttaagctcacgagga 33369479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 37073771 - 37073823
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaa 443  Q
    ||||||| ||||||||||||||||||||| ||  | |||| ||||||||||||    
T  37073771 ttcgaaccccgaaccttacatatattatgcatagtccataccaattgagttaa 37073823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 38370807 - 38370755
Alignment:
Q  392 tcgaactccgaaccttacatatattatgtattattcatatcaattgagttaag 444  Q
    |||||||||| ||||||||||| ||||| ||| || |||| ||||||||||||    
T  38370807 tcgaactccggaccttacatattttatgcattgtttatattaattgagttaag 38370755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 391 - 454
Target Start/End: Complemental strand, 42146373 - 42146310
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||    
T  42146373 ttcgaactccgaaccttgcatatattatatattattcgtatcaattgagttaagctcacgagga 42146310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 391 - 455
Target Start/End: Complemental strand, 51046200 - 51046136
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 455  Q
    ||||||||||||||||||||||| ||||||||| |||||| ||| |||||||| ||| |||||||    
T  51046200 ttcgaactccgaaccttacatattttatgtattgttcataccaactgagttaaactcacgaggat 51046136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 447
Target Start/End: Original strand, 47719099 - 47719166
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||||||| ||||||||||||||||||| ||||||||||| ||||| | || ||| ||||||||||||    
T  47719099 ggtggccgggattcgaactccgaaccttgcatatattatgcattatccttaccaactgagttaagctc 47719166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 448
Target Start/End: Complemental strand, 4859129 - 4859084
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctcg 448  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||    
T  4859129 accttacatatattatgtattattcttatcaactgagttaagctcg 4859084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Original strand, 31759900 - 31759952
Alignment:
Q  395 aactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||    
T  31759900 aactccggaccttgcatatattatgcattatccatatcaattgagttaagctc 31759952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 44287148 - 44287197
Alignment:
Q  395 aactccgaaccttacatatattatgtattattcatatcaattgagttaag 444  Q
    |||||||||||||| |||||||| |||||||||||| |||||||| ||||    
T  44287148 aactccgaaccttatatatattacgtattattcataccaattgagctaag 44287197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 447
Target Start/End: Complemental strand, 37050987 - 37050931
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||||| ||| ||||| ||||| ||||| |||||||||| ||||||||||||||||    
T  37050987 ttcgaaccccggaccttgcatattttatgcattattcataccaattgagttaagctc 37050931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 38000121 - 38000073
Alignment:
Q  372 ttttttacggtggccgagattcgaactccgaaccttacatatattatgt 420  Q
    ||||||| ||||||||  |||||||| ||||||||||||||||||||||    
T  38000121 ttttttatggtggccggaattcgaaccccgaaccttacatatattatgt 38000073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 447
Target Start/End: Complemental strand, 11410696 - 11410629
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||| || ||||||||| ||  ||||||||||| ||||||||| |||||| ||| ||||||||||||    
T  11410696 ggtggtcgggattcgaaccccagaccttacatattttatgtattgttcataccaactgagttaagctc 11410629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 447
Target Start/End: Original strand, 51067886 - 51067953
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||| || |||| |||| |||| |||| ||||||||||||||||||| || ||| ||||||||||||    
T  51067886 ggtggtcgggatttgaaccccgagccttgcatatattatgtattattcttaccaactgagttaagctc 51067953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 455
Target Start/End: Original strand, 41182623 - 41182673
Alignment:
Q  405 cttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 455  Q
    |||||| |||||||| |||||||||| ||| |||||||||||| |||||||    
T  41182623 cttacacatattatgcattattcataccaactgagttaagctcacgaggat 41182673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 454
Target Start/End: Complemental strand, 41973324 - 41973250
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||| | ||||||| ||| ||||| ||||||||||| ||| | | || ||||| |||||||||||||||||    
T  41973324 ggtggccggggttcgaaccccggaccttgcatatattatgcattgtccctaccaattaagttaagctcgcgagga 41973250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 425
Target Start/End: Original strand, 46012399 - 46012433
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattat 425  Q
    ||||||||||||||||| |||||||||||||||||    
T  46012399 ttcgaactccgaaccttgcatatattatgtattat 46012433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 446
Target Start/End: Complemental strand, 5468912 - 5468851
Alignment:
Q  385 ccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagct 446  Q
    |||| |||| |||||| ||| |||||||||||||  ||||||| |||||| |||||||||||    
T  5468912 ccgaaattcaaactccaaactttacatatattatacattattcctatcaactgagttaagct 5468851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Original strand, 13953888 - 13953929
Alignment:
Q  402 aaccttacatatattatgtattattcatatcaattgagttaa 443  Q
    |||||| ||||||||||| ||| |||||||||||||||||||    
T  13953888 aaccttgcatatattatgcattgttcatatcaattgagttaa 13953929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 452
Target Start/End: Original strand, 14556569 - 14556622
Alignment:
Q  399 ccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 452  Q
    |||||| ||| |||||||||  ||| |||||||| |||||||||||||||||||    
T  14556569 ccgaactttatatatattatacattgttcatatcgattgagttaagctcgcgag 14556622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 23045246 - 23045193
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||||||| ||||||||||||||||| ||| ||||||| ||  |||||||||||    
T  23045246 gaactccggaccttacatatattatgcattgttcatattaacggagttaagctc 23045193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 454
Target Start/End: Complemental strand, 28213973 - 28213908
Alignment:
Q  389 gattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||||||| || || ||||||||||| ||||||  ||||||| ||| |||||||| ||||||    
T  28213973 gattcgaactccaaatctcacatatattatatattatgtatatcaactgaattaagctcacgagga 28213908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 454
Target Start/End: Original strand, 48681942 - 48681999
Alignment:
Q  397 ctccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||||||| ||||||||||| ||| |||||| ||| |||| ||||||| ||||||    
T  48681942 ctccgaaccttgcatatattatgcattgttcataccaactgagctaagctcacgagga 48681999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 49843478 - 49843429
Alignment:
Q  405 cttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||||||||||| ||| |||| | |||||||||||||||| ||||||    
T  49843478 cttacatatattatgcattgttcaaaccaattgagttaagctcacgagga 49843429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 427
Target Start/End: Complemental strand, 422601 - 422569
Alignment:
Q  395 aactccgaaccttacatatattatgtattattc 427  Q
    ||||||||||||||||||||||||| |||||||    
T  422601 aactccgaaccttacatatattatgcattattc 422569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 455
Target Start/End: Complemental strand, 2613780 - 2613716
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 455  Q
    ||||||| ||||||||||||||| ||||| ||| | |||| ||| |||| ||||||| |||||||    
T  2613780 ttcgaaccccgaaccttacatattttatgcattgtccataccaactgagctaagctcacgaggat 2613716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 447
Target Start/End: Original strand, 32433098 - 32433154
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||||| |||||||||| |||| ||||| ||| |||||||| | ||||||||||||    
T  32433098 ttcgaaccccgaaccttatatattttatgcatttttcatatcgactgagttaagctc 32433154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 47071973 - 47072017
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||| ||||||||||||||| ||| || ||||||||||||||||    
T  47071973 accttgcatatattatgtattgttcttaccaattgagttaagctc 47072017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 49222871 - 49222811
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||| ||| ||||| |||||||| || ||| ||| ||||||||||||||||||| ||||||    
T  49222871 gaaccccggaccttgcatatattgtgcattgttcctatcaattgagttaagctcacgagga 49222811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 372 - 452
Target Start/End: Original strand, 50380820 - 50380900
Alignment:
Q  372 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 452  Q
    ||||||| ||||| ||||||| |||||||| ||||||||||||||||| ||| |||||| ||| ||| |||||||| ||||    
T  50380820 ttttttatggtggtcgagatttgaactccggaccttacatatattatgcattgttcataccaactgaattaagctcacgag 50380900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 452
Target Start/End: Original strand, 6459927 - 6459988
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 452  Q
    ||||||||||| ||||||||||||||||| ||| | |||||||| |||||||||||| ||||    
T  6459927 ttcgaactccggaccttacatatattatgcattgtccatatcaactgagttaagctcacgag 6459988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 454
Target Start/End: Original strand, 51436609 - 51436672
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||||||||||||| ||||||||||| ||| ||| |||||| ||||||||| || ||||||    
T  51436609 ttcgaactccgaaccttgcatatattatgcattgttcgtatcaactgagttaagttcacgagga 51436672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 452
Target Start/End: Complemental strand, 36569228 - 36569170
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 452  Q
    |||||||||||||||||||||||||| ||| ||||||  ||||||| ||||||| ||||    
T  36569228 gaactccgaaccttacatatattatgcatttttcatactaattgagctaagctcacgag 36569170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 448
Target Start/End: Complemental strand, 39146697 - 39146643
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcg 448  Q
    |||||||||||||||| ||||||||| ||| | |||||||| |||||||||||||    
T  39146697 gaactccgaaccttacttatattatgcattgtccatatcaactgagttaagctcg 39146643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 454
Target Start/End: Original strand, 14202485 - 14202545
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||| ||| ||||||||||||||||| ||||| || ||||| |||||||||||| ||||||    
T  14202485 gaaccccggaccttacatatattatgcattatccaaatcaactgagttaagctcacgagga 14202545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 39595952 - 39595996
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||| |||||||||||||||||| |||||||||||| |||||||    
T  39595952 accttgcatatattatgtattatttatatcaattgagctaagctc 39595996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 41536980 - 41536928
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaa 443  Q
    |||||||| |||||||| ||||||||||||||| | | |||||||||||||||    
T  41536980 ttcgaacttcgaaccttgcatatattatgtattgtccttatcaattgagttaa 41536928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 47704631 - 47704584
Alignment:
Q  400 cgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||||||||||||||||||  |||||||||| ||| ||||||||||||    
T  47704631 cgaaccttacatatattatacattattcataccaactgagttaagctc 47704584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 20515727 - 20515765
Alignment:
Q  409 catatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  20515727 catatattatgtaatattcctatcaattgagttaagctc 20515765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 454
Target Start/End: Original strand, 24837493 - 24837539
Alignment:
Q  408 acatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||||||||||| |||||||||| | |||||||||| ||||||    
T  24837493 acatatattatgtattgttcatatcaactaagttaagctcacgagga 24837539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 446
Target Start/End: Complemental strand, 37422248 - 37422194
Alignment:
Q  392 tcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagct 446  Q
    ||||||||||||||||||| |||||||| ||| || ||| ||| |||||||||||    
T  37422248 tcgaactccgaaccttacacatattatgcattgttaataccaactgagttaagct 37422194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 447
Target Start/End: Complemental strand, 46779181 - 46779139
Alignment:
Q  405 cttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||||||||||| | ||||||| |||||||||||||||||||    
T  46779181 cttacatatattacgcattattcctatcaattgagttaagctc 46779139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 444
Target Start/End: Complemental strand, 50668395 - 50668345
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaag 444  Q
    |||| ||||||||||||||||||||||||| |||||| ||| ||| |||||    
T  50668395 gaaccccgaaccttacatatattatgtattgttcataccaactgaattaag 50668345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 460
Target Start/End: Original strand, 2587715 - 2587772
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctcgcgaggattttta 460  Q
    ||||||||||||||||| ||||| |||| |||||||| ||||||| ||| ||| ||||    
T  2587715 accttacatatattatgcattatccataccaattgagctaagctcacgatgatattta 2587772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 452
Target Start/End: Original strand, 32923245 - 32923294
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctcgcgag 452  Q
    ||||||||||||||||| ||| |||||| ||| |||||||||||| ||||    
T  32923245 accttacatatattatgcattgttcataccaactgagttaagctcacgag 32923294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 454
Target Start/End: Original strand, 38340333 - 38340386
Alignment:
Q  401 gaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||||||||| ||||||||| | |||| ||| |||||||||||| ||||||    
T  38340333 gaaccttacatattttatgtattgtccataccaactgagttaagctcacgagga 38340386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 42773107 - 42773054
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||| ||||||||||||||| ||||||||| | |||||||| ||||||| ||||    
T  42773107 gaacaccgaaccttacatattttatgtattgtccatatcaactgagttatgctc 42773054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Original strand, 44857200 - 44857245
Alignment:
Q  402 aaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||||| |||||||||||||||||  ||| ||||||||||||||||    
T  44857200 aaccttgcatatattatgtattatctataccaattgagttaagctc 44857245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 49952575 - 49952628
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||| ||| ||||||||||||||||| ||| | || ||||||||||||||||||    
T  49952575 gaaccccggaccttacatatattatgcattgtccaaatcaattgagttaagctc 49952628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 54587947 - 54587902
Alignment:
Q  402 aaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||||||||||||||||| ||||| |||||||| ||||||| ||||    
T  54587947 aaccttacatatattatgcattatccatatcaactgagttatgctc 54587902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 447
Target Start/End: Original strand, 7371551 - 7371607
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||||| ||| ||||| ||||||||||||||| | | |||||| ||||||||||||    
T  7371551 ttcgaaccccggaccttgcatatattatgtattgtccttatcaactgagttaagctc 7371607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 453
Target Start/End: Complemental strand, 8737773 - 8737725
Alignment:
Q  405 cttacatatattatgtattattcatatcaattgagttaagctcgcgagg 453  Q
    ||||||||||||||||||| || ||||||||||||  |||||| |||||    
T  8737773 cttacatatattatgtattgtttatatcaattgagcgaagctcacgagg 8737725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 454
Target Start/End: Original strand, 25593541 - 25593628
Alignment:
Q  366 tatttattttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||| ||||||| |||| ||| |||| |||||||||||||| ||||| ||||| ||  | ||||||||||| | ||||||| ||||||    
T  25593541 tattttttttttatggtgaccgggatttgaactccgaaccttgcatattttatgcatcgtccatatcaattg-gctaagctcacgagga 25593628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 443
Target Start/End: Original strand, 37381246 - 37381286
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaa 443  Q
    ||||||||||||||||| |||||  ||||||||||||||||    
T  37381246 accttacatatattatgcattatctatatcaattgagttaa 37381286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 454
Target Start/End: Original strand, 43374278 - 43374338
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||||||||| ||||| ||||| ||| | |||||||| |||| ||||||| ||||||    
T  43374278 gaactccgaaccttgcatattttatgcattgtccatatcaactgagctaagctcacgagga 43374338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 443
Target Start/End: Complemental strand, 52693851 - 52693807
Alignment:
Q  399 ccgaaccttacatatattatgtattattcatatcaattgagttaa 443  Q
    ||||||||||||||||||||||||| ||| ||| || ||||||||    
T  52693851 ccgaaccttacatatattatgtattcttcctattaactgagttaa 52693807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 447
Target Start/End: Complemental strand, 52699435 - 52699375
Alignment:
Q  387 gagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||||| |||||  |||||||||||||||||| ||||||| ||  ||||||| |||||||    
T  52699435 gagattcaaactcaaaaccttacatatattatgcattattcttactaattgagataagctc 52699375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 455
Target Start/End: Original strand, 56309323 - 56309367
Alignment:
Q  411 tatattatgtattattcatatcaattgagttaagctcgcgaggat 455  Q
    ||||||||| ||| | ||||||||||||||||||||| |||||||    
T  56309323 tatattatgcattgtccatatcaattgagttaagctcacgaggat 56309367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 380 - 454
Target Start/End: Complemental strand, 44026677 - 44026603
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||| |||||||| |||| |||||||||||||||||||||  || | |||| |||||||||||||||| ||||||    
T  44026677 ggtgaccgagatttgaaccccgaaccttacatatattatgcgttgtccataccaattgagttaagctcacgagga 44026603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 19159996 - 19159944
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagct 446  Q
    |||||||||||||| ||||||||||| ||| |||||||||| |||||||||||    
T  19159996 gaactccgaaccttgcatatattatgcattgttcatatcaactgagttaagct 19159944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 456
Target Start/End: Complemental strand, 19967487 - 19967411
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggatt 456  Q
    ||||| |||| || |||||||||||||| || |||||||| ||| |||||||||| |||| ||||||| ||||||||    
T  19967487 ggtggtcgaggtttgaactccgaaccttgcacatattatgcattgttcatatcaactgagctaagctcacgaggatt 19967411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 38334699 - 38334639
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||| |||||||||||||||||| ||||||||||| ||||||| |||| ||| ||||||    
T  38334699 gaactctgaaccttacatatattatatattattcataccaattgaattaatctcacgagga 38334639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 454
Target Start/End: Original strand, 8761567 - 8761630
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||||| | |||||||||||||||||||| | |||| ||| |||||||||||| ||||||    
T  8761567 ttcgaactccaacccttacatatattatgtattgtccataccaactgagttaagctcacgagga 8761630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 454
Target Start/End: Complemental strand, 20455960 - 20455886
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||| ||||||||| ||| ||||| ||||||||||| ||| | |||| |||||||| ||||||| ||||||    
T  20455960 ggtggccgggattcgaaccccggaccttgcatatattatgcattgtccataccaattgagctaagctcacgagga 20455886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 455
Target Start/End: Original strand, 10977077 - 10977126
Alignment:
Q  406 ttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 455  Q
    |||||||||||||||||| ||||||||||  ||||||||||| |||||||    
T  10977077 ttacatatattatgtatttttcatatcaaccgagttaagctcacgaggat 10977126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 17394734 - 17394689
Alignment:
Q  389 gattcgaactccgaaccttacatatattatgtattattcatatcaa 434  Q
    ||||| ||| ||||||||||||||||||||||||||||| ||||||    
T  17394734 gattcaaaccccgaaccttacatatattatgtattattcctatcaa 17394689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 454
Target Start/End: Complemental strand, 11846436 - 11846392
Alignment:
Q  410 atatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||||||||||||| || ||| |||||||||||||||||||    
T  11846436 atatattatgtattattcctaccaactgagttaagctcgcgagga 11846392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 455
Target Start/End: Complemental strand, 3196609 - 3196554
Alignment:
Q  400 cgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 455  Q
    |||||||||||||||||||| ||| |||||||||| ||||  |||||| |||||||    
T  3196609 cgaaccttacatatattatgcattgttcatatcaactgagcaaagctcacgaggat 3196554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 18678183 - 18678132
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||||||||||||||||||  |||  ||||||||||||||| ||||||    
T  18678183 accttacatatattatgtattatcaatactaattgagttaagctcacgagga 18678132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 454
Target Start/End: Original strand, 31837947 - 31838002
Alignment:
Q  399 ccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||||||||||||||||  ||||| |||| ||||||||||||| || ||||||    
T  31837947 ccgaaccttacatatattatacattatccataccaattgagttaagttcacgagga 31838002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 454
Target Start/End: Complemental strand, 33064044 - 33063981
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||||||| ||||| ||||||||||| ||| | |||||||| |||| ||||||| ||||||    
T  33064044 ttcgaactccggaccttgcatatattatgcattgtccatatcaactgagctaagctcacgagga 33063981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 447
Target Start/End: Original strand, 41682380 - 41682446
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||||| |||||| |||| || |||||||||||||||||| |||||| ||| ||| ||||||||||||    
T  41682380 ggtggctgagatttgaac-cctaaccttacatatattatgcattatttataccaactgagttaagctc 41682446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 452
Target Start/End: Original strand, 9519720 - 9519778
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 452  Q
    ||||| |||||||| ||||||||||| ||| | ||||||||||||| ||||||| ||||    
T  9519720 gaacttcgaaccttgcatatattatgcattgtccatatcaattgagctaagctcacgag 9519778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 454
Target Start/End: Complemental strand, 13196757 - 13196695
Alignment:
Q  392 tcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||| ||||||||| ||||||||||| ||| |||||| ||| ||||||||| || ||||||    
T  13196757 tcgaaccccgaaccttgcatatattatgcattgttcataccaactgagttaagttcacgagga 13196695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 454
Target Start/End: Original strand, 22523004 - 22523078
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||| |||| ||||  |||||||| ||||||||||||||| | |||| ||| |||| ||||||| ||||||    
T  22523004 ggtggccgggatttgaacctcgaaccttgcatatattatgtattgtccataccaactgagctaagctcacgagga 22523078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 454
Target Start/End: Complemental strand, 34977281 - 34977199
Alignment:
Q  372 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||| |||||||| | ||  ||||||| ||||| ||||||||||| ||| | |||| ||| |||||||||||| ||||||    
T  34977281 ttttttatggtggccggggtttaaactccggaccttgcatatattatgcattgtccataccaactgagttaagctcacgagga 34977199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 438
Target Start/End: Original strand, 41542967 - 41543033
Alignment:
Q  372 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattga 438  Q
    ||||||| |||||||||| ||  ||| ||||||||||||||||||||| ||| | |||| |||||||    
T  41542967 ttttttatggtggccgaggtttaaaccccgaaccttacatatattatgcattgtccataccaattga 41543033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 5168585 - 5168638
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||| ||||||||| ||||||||||| ||||| | |||||| ||||||||||||    
T  5168585 gaaccccgaaccttgcatatattatgcattatccctatcaactgagttaagctc 5168638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 455
Target Start/End: Complemental strand, 7537165 - 7537104
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 455  Q
    |||||||| ||||| ||||||||||| ||| ||| |||||| |||||||| ||| |||||||    
T  7537165 gaactccggaccttgcatatattatgcattgttcctatcaactgagttaatctcacgaggat 7537104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 442
Target Start/End: Complemental strand, 7539086 - 7539037
Alignment:
Q  393 cgaactccgaaccttacatatattatgtattattcatatcaattgagtta 442  Q
    |||| |||||||||| ||||||||||  ||||| ||||||||||||||||    
T  7539086 cgaattccgaaccttgcatatattatacattatccatatcaattgagtta 7539037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 7772466 - 7772519
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||||||| ||||| ||||||||||| ||||| | || ||||||||||||||||    
T  7772466 gaactccggaccttgcatatattatgcattatccttaccaattgagttaagctc 7772519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 8775314 - 8775265
Alignment:
Q  405 cttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||||||||||||||||||| |||||| |||  ||||||| ||||||    
T  8775314 cttacatatattatgtattattcctatcaactgacctaagctcacgagga 8775265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 20239389 - 20239345
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||| ||||||||||| ||||| | |||||||||||||||||||    
T  20239389 accttgcatatattatgcattatccctatcaattgagttaagctc 20239345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 38622977 - 38622941
Alignment:
Q  411 tatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  38622977 tatattatgcattattcatattaattgagttaagctc 38622941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 41853434 - 41853370
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaag 444  Q
    |||||||| | ||||||| ||| ||||||||||||||||| ||| || ||||||  |||||||||    
T  41853434 ggtggccggggttcgaacgccggaccttacatatattatgcattgtttatatcagctgagttaag 41853370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 444
Target Start/End: Original strand, 3456832 - 3456877
Alignment:
Q  399 ccgaaccttacatatattatgtattattcatatcaattgagttaag 444  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  3456832 ccgaaccttacatatattatgcattgttcatatcaattgagttaag 3456877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 454
Target Start/End: Complemental strand, 40316907 - 40316851
Alignment:
Q  398 tccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||| |||||||||||||| |||||||||||||| |||| ||||||| ||||||    
T  40316907 tccgaactttacatatattatgcattattcatatcaactgagataagctcacgagga 40316851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 454
Target Start/End: Complemental strand, 7380113 - 7380039
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||| ||||||||| || ||||||  |||||||||||||| | |||| |||||||| ||||||| ||||||    
T  7380113 ggtggccgggattcgaacccccaaccttgtatatattatgtattgtccataacaattgagctaagctcacgagga 7380039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 455
Target Start/End: Original strand, 8717452 - 8717542
Alignment:
Q  365 atatttattttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 455  Q
    |||||| ||||||| |||||||||| || |||| ||||||||| ||||||||||| ||| | |||| ||| |||| ||| ||| |||||||    
T  8717452 atatttcttttttatggtggccgaggtttgaaccccgaaccttgcatatattatgcattgtccataccaactgagctaaactcacgaggat 8717542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 454
Target Start/End: Original strand, 35682684 - 35682758
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||||||||||||  ||||||||||||||||||||| ||| | | || ||| |||| ||||||| ||||||    
T  35682684 ggtggccgagattcgaaacccgaaccttacatatattatggattgtccgtaccaactgagctaagctcacgagga 35682758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 447
Target Start/End: Complemental strand, 574461 - 574386
Alignment:
Q  372 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||||| ||||| |||  ||||||||||| ||||||||||||||||| ||| |  ||||||| |||| |||||||    
T  574461 ttttttatggtggtcgaagttcgaactccggaccttacatatattatgcattgtctatatcaactgagctaagctc 574386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 455
Target Start/End: Complemental strand, 18959198 - 18959143
Alignment:
Q  400 cgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 455  Q
    |||||||| ||||||||||| ||||| | || ||||||||||||||||| ||||||    
T  18959198 cgaaccttgcatatattatgcattatccctaacaattgagttaagctcgagaggat 18959143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 444
Target Start/End: Original strand, 26695302 - 26695361
Alignment:
Q  385 ccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaag 444  Q
    |||||||| ||||| |||||||| ||||||||||||||||| | || |||||||| ||||    
T  26695302 ccgagattagaacttcgaaccttgcatatattatgtattatccttaacaattgagctaag 26695361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 447
Target Start/End: Complemental strand, 40795446 - 40795379
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||||||  ||| |||| ||| ||||| ||||||||||||||| |||||| ||| ||||||||||||    
T  40795446 ggtggccggaattagaaccccggaccttgcatatattatgtattgttcataccaactgagttaagctc 40795379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 454
Target Start/End: Complemental strand, 6447258 - 6447184
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||| |||||| |||||||| ||||| ||||||||||| ||| | |||| ||| |||||||| ||| ||||||    
T  6447258 ggtggctgagatttgaactccggaccttgcatatattatgcattgtccataccaactgagttaaactcacgagga 6447184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 457
Target Start/End: Complemental strand, 39975536 - 39975482
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctcgcgaggattt 457  Q
    ||||||||||||||||||||| ||| || |||||||| ||||||  |||||||||    
T  39975536 accttacatatattatgtattgttcttaccaattgagctaagcttacgaggattt 39975482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 445
Target Start/End: Complemental strand, 41603107 - 41603065
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagc 445  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||    
T  41603107 accttacatatattatgcattgttcataccaattgagttaagc 41603065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 454
Target Start/End: Original strand, 10732788 - 10732841
Alignment:
Q  401 gaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||  |||||||||| ||| |||||| |||||||||||||||| ||||||    
T  10732788 gaaccttgtatatattatgcattgttcataccaattgagttaagctcacgagga 10732841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 444
Target Start/End: Original strand, 12133548 - 12133593
Alignment:
Q  399 ccgaaccttacatatattatgtattattcatatcaattgagttaag 444  Q
    ||||||||||||||||| ||| ||| |||||||||||| |||||||    
T  12133548 ccgaaccttacatatataatgcattgttcatatcaattcagttaag 12133593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 443
Target Start/End: Original strand, 38489200 - 38489257
Alignment:
Q  386 cgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaa 443  Q
    |||||||||||| ||||||||| ||||||| ||| ||| ||| |||||| ||||||||    
T  38489200 cgagattcgaaccccgaaccttgcatatatcatgcattgttcttatcaactgagttaa 38489257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 45049630 - 45049577
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||| ||||||||||||||| ||||| ||||| |||| ||||||||| ||||||    
T  45049630 gaaccccgaaccttacatattttatgcattatccataccaattgagtcaagctc 45049577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 454
Target Start/End: Original strand, 1230675 - 1230727
Alignment:
Q  402 aaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||||||||||||| ||| ||| || ||| |||||||| ||||||||||    
T  1230675 aaccttacatatattatgcattgttcctaccaactgagttaaactcgcgagga 1230727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 423
Target Start/End: Complemental strand, 11670809 - 11670777
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtatt 423  Q
    ||||||||||| |||||||||||||||||||||    
T  11670809 ttcgaactccggaccttacatatattatgtatt 11670777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 459
Target Start/End: Original strand, 17062354 - 17062410
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctcgcgaggattttt 459  Q
    ||||| ||||||||||||||| |  ||||||| |||||||||||| |||||| ||||    
T  17062354 accttgcatatattatgtattgtctatatcaactgagttaagctcacgaggactttt 17062410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 459
Target Start/End: Complemental strand, 17586004 - 17585948
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctcgcgaggattttt 459  Q
    ||||| ||||||||||||||| |  ||||||| |||||||||||| |||||| ||||    
T  17586004 accttgcatatattatgtattgtctatatcaactgagttaagctcacgaggactttt 17585948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 446
Target Start/End: Complemental strand, 24687844 - 24687782
Alignment:
Q  382 tggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagct 446  Q
    ||||||| ||||||| ||||| |||||||||||||||| ||| || |||||||||||| ||||||    
T  24687844 tggccgaaattcgaa-tccga-ccttacatatattatgcattgtttatatcaattgagctaagct 24687782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 454
Target Start/End: Original strand, 27718900 - 27718960
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||| ||||| ||||||||||| ||| | |||||||| |||| ||||||| ||||||    
T  27718900 gaactccggaccttgcatatattatgcattgtccatatcaactgagctaagctcacgagga 27718960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 452
Target Start/End: Complemental strand, 28581013 - 28580941
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 452  Q
    ||||| || |||| |||| ||||||||||||||| ||||| |||||||||| ||| ||||  |||||| ||||    
T  28581013 ggtggtcgggatttgaaccccgaaccttacatattttatgcattattcataccaactgagccaagctcacgag 28580941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 29293232 - 29293172
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||| |||||||||||||||| |||| |  |||| || |||||||||||| ||||||    
T  29293232 gaactccggaccttacatatattatatattgtctatattaactgagttaagctcacgagga 29293172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 41625240 - 41625196
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||||||||||||||| |||||||||| ||| |||| |||||||    
T  41625240 accttacatatattatgcattattcataccaactgagctaagctc 41625196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 452
Target Start/End: Original strand, 429181 - 429242
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 452  Q
    |||| ||||| |||||| ||||||||||||||||| |||||||| |||||||||||| ||||    
T  429181 ttcggactccaaaccttgcatatattatgtattatccatatcaactgagttaagctcacgag 429242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 444
Target Start/End: Complemental strand, 27270312 - 27270240
Alignment:
Q  372 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaag 444  Q
    ||||||| |||||| ||| ||||||||||||||||| ||||||||||| ||| | |||| ||| |||||||||    
T  27270312 ttttttatggtggctgaggttcgaactccgaaccttgcatatattatgcattgtccataccaactgagttaag 27270240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 447
Target Start/End: Original strand, 9893072 - 9893139
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||||||| |||| ||||| |||||||| ||||| ||||||||| | ||||||||||||| |||||||    
T  9893072 ggtggccgggatttgaacttcgaaccttgcatattttatgtattgtccatatcaattgagataagctc 9893139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 32496932 - 32496881
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||||||||||||||||| |||||   ||||||||||||||||||||||    
T  32496932 accttacatatattatgtattgttcatgctaattgagttaagctcgcgagga 32496881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 447
Target Start/End: Complemental strand, 34000331 - 34000264
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||||||  ||| |||| ||||||||||||||||||||| ||||| | |||||| ||||||||||||    
T  34000331 ggtggccggtatttgaaccccgaaccttacatatattatgcattatccttatcaactgagttaagctc 34000264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 447
Target Start/End: Complemental strand, 47960953 - 47960898
Alignment:
Q  392 tcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||||||||||||||  ||||||||||||||| | | |||||||||||||||||||    
T  47960953 tcgaactccgaacctcgcatatattatgtattgtccttatcaattgagttaagctc 47960898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 444
Target Start/End: Complemental strand, 32855575 - 32855525
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaag 444  Q
    ||||||||||| || ||||||||||| |||||||||||||| |||||||||    
T  32855575 gaactccgaactttgcatatattatgcattattcatatcaactgagttaag 32855525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 454
Target Start/End: Complemental strand, 39706689 - 39706615
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||||||| || ||| || |||||| ||||||||||||||| || ||| |||||||||||| ||| ||||||    
T  39706689 ggtggccgagactcaaaccccaaaccttgcatatattatgtattgtttataccaattgagttaatctcacgagga 39706615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 443
Target Start/End: Complemental strand, 44639689 - 44639647
Alignment:
Q  401 gaaccttacatatattatgtattattcatatcaattgagttaa 443  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  44639689 gaaccttacatatattatgtattgttcataccaattgagttaa 44639647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 41132499 - 41132446
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||||||||||||| ||||| ||||||||| |||| |||||||||| |||||||    
T  41132499 gaactccgaaccttgcatattttatgtattgttcaaatcaattgagctaagctc 41132446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 16198452 - 16198408
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtatta 424  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||    
T  16198452 ggtggccgagattcgaactccggaccttgcatatattatgcatta 16198408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 444
Target Start/End: Complemental strand, 27263418 - 27263346
Alignment:
Q  372 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaag 444  Q
    ||||||| |||||| | | ||||||||||||||||| ||||||||||| ||| | |||| ||| |||||||||    
T  27263418 ttttttatggtggctggggttcgaactccgaaccttgcatatattatgcattgtccataccaactgagttaag 27263346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 446
Target Start/End: Original strand, 35751389 - 35751429
Alignment:
Q  406 ttacatatattatgtattattcatatcaattgagttaagct 446  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  35751389 ttacatatattatgcattattcatatcaattgagctaagct 35751429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 21580862 - 21580819
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagct 446  Q
    ||||||||||||||||| ||| | ||||||||||||||||||||    
T  21580862 accttacatatattatgcattgtccatatcaattgagttaagct 21580819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 447
Target Start/End: Complemental strand, 48527259 - 48527192
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||||||| ||||||||||||| ||||| ||||||||||| ||| | | |||||| |||| |||||||    
T  48527259 ggtggccgggattcgaactccggaccttgcatatattatgcattgtccttatcaactgagataagctc 48527192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 454
Target Start/End: Complemental strand, 4905353 - 4905271
Alignment:
Q  372 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||| |||||||| | || |||||||||||||| ||||| ||||| ||| | || | ||| |||||||||||| ||||||    
T  4905353 ttttttatggtggccggggtttgaactccgaaccttgcatattttatgcattgtccacaacaactgagttaagctcacgagga 4905271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 455
Target Start/End: Complemental strand, 2622400 - 2622319
Alignment:
Q  374 ttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 455  Q
    ||||| |||||||| | || ||||||  || ||||||||||||||||||| ||| |||||| | || ||||||| |||||||    
T  2622400 ttttatggtggccggggtttgaactctaaatcttacatatattatgtattgttcctatcaactaagctaagctcacgaggat 2622319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 425
Target Start/End: Original strand, 2962710 - 2962763
Alignment:
Q  372 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattat 425  Q
    ||||||| |||||||| ||||| ||| ||||||||| ||||||||||| |||||    
T  2962710 ttttttatggtggccgggattcaaaccccgaaccttgcatatattatgcattat 2962763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 434
Target Start/End: Original strand, 23205367 - 23205408
Alignment:
Q  393 cgaactccgaaccttacatatattatgtattattcatatcaa 434  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||    
T  23205367 cgaaccccgaaccttgcatttattatgtattattcatatcaa 23205408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 454
Target Start/End: Complemental strand, 12167446 - 12167402
Alignment:
Q  410 atatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||||| ||| |||||||||||||| ||||| |||||||||    
T  12167446 atatattatgcattgttcatatcaattgaattaagttcgcgagga 12167402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 15015287 - 15015243
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||||||||||||||| ||| ||| |||||| ||||||||||||    
T  15015287 accttacatatattatgcattgttcttatcaactgagttaagctc 15015243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 24099246 - 24099286
Alignment:
Q  399 ccgaaccttacatatattatgtattattcatatcaattgag 439  Q
    ||||||||||||||||||||| ||| || ||||||||||||    
T  24099246 ccgaaccttacatatattatgcattgtttatatcaattgag 24099286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 29726855 - 29726795
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||| ||||||||| ||||||||||  ||| ||||| |||| |||||||||||| ||||||    
T  29726855 gaaccccgaaccttgcatatattatacattgttcatgtcaactgagttaagctcacgagga 29726795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 48837936 - 48837872
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaag 444  Q
    |||||||| | ||||||| || ||| || ||||||||||| ||||| |||| |||||||||||||    
T  48837936 ggtggccggggttcgaaccccaaactttgcatatattatgcattatccataccaattgagttaag 48837872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 9311947 - 9311996
Alignment:
Q  405 cttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||||||||||||||||||||| ||| |||||||||||| ||||||    
T  9311947 cttacatatattatgtattattcataccaactgagttaagctcacgagga 9311996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 13496171 - 13496111
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||| ||||| ||||||||||| ||| |||||||||| |||||||||||| ||||||    
T  13496171 gaactccggaccttgcatatattatgcattgttcatatcaactgagttaagctcacgagga 13496111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 454
Target Start/End: Complemental strand, 9665368 - 9665305
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||| ||| |||||||||||||||| |||| |||||| |||||||||||| ||| ||||||    
T  9665368 ttcgaaccccggaccttacatatattatatattgttcataccaattgagttaaactcacgagga 9665305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 455
Target Start/End: Complemental strand, 28951468 - 28951393
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 455  Q
    |||||||||| ||  ||||| ||||||| ||||||||||| ||| |||||| ||| |||||||||||| |||||||    
T  28951468 ggtggccgaggtttaaactctgaaccttgcatatattatgcattgttcataccaactgagttaagctcacgaggat 28951393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 454
Target Start/End: Original strand, 8916466 - 8916540
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||| | | || ||| |||||| ||||| ||||||    
T  8916466 ggtggccgagatttgaactccggaccttgcatatattatgtattgtccctaccaactgagtttagctcacgagga 8916540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 12904323 - 12904376
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||||||||||||| ||||||||||| ||| |||||||||| |||| |||||||    
T  12904323 gaactccgaaccttgcatatattatgcattgttcatatcaactgaggtaagctc 12904376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 457
Target Start/End: Complemental strand, 2213365 - 2213289
Alignment:
Q  381 gtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggattt 457  Q
    ||||||| ||||| |||| || ||||| ||||||||||| ||| ||| || ||||||||||||| || |||||||||    
T  2213365 gtggccgggattctaacttcggaccttgcatatattatgcattgttcttaccaattgagttaagttcacgaggattt 2213289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 447
Target Start/End: Original strand, 8629688 - 8629755
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||| |||| || |||| ||||||||| ||||||||||| ||| | |||| ||||||||||||||||    
T  8629688 ggtggtcgaggtttgaaccccgaaccttgcatatattatgcattgtccataccaattgagttaagctc 8629755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 454
Target Start/End: Complemental strand, 10902398 - 10902335
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||||| ||| |||||||||||||| ||| | |||||||  |||| ||||||||||||||    
T  10902398 ttcgaactccaaactttacatatattatgcattgtccatatcatctgagctaagctcgcgagga 10902335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 454
Target Start/End: Complemental strand, 11148270 - 11148207
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||| |||||||||| |||||||||||||||| ||  | || |||||||||||| ||||||    
T  11148270 ttcgaaccccgaaccttaaatatattatgtattatccaagttaactgagttaagctcacgagga 11148207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 454
Target Start/End: Original strand, 12336319 - 12336392
Alignment:
Q  381 gtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||| |||||||||||| ||| |||||| |||||||||| ||| | ||||| || |||||||| ||| ||||||    
T  12336319 gtggtcgagattcgaaccccgtaccttatatatattatgcattgtccatattaactgagttaaactcacgagga 12336392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 23635720 - 23635773
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||||||||||||||||||||||||| ||| |  ||||||| |||| |||||||    
T  23635720 gaactccgaaccttacatatattatgcattgtatatatcaactgagataagctc 23635773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 455
Target Start/End: Original strand, 24438288 - 24438349
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgaggat 455  Q
    |||| |||||| |||||||||||||| ||||||| || ||| ||||||||| || |||||||    
T  24438288 gaaccccgaactttacatatattatgcattattcttaccaactgagttaagttcacgaggat 24438349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 439
Target Start/End: Complemental strand, 6283994 - 6283946
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgag 439  Q
    |||||||||||| | |||||||||||||| ||| ||| |||||||||||    
T  6283994 ttcgaactccgagctttacatatattatgcattgttcttatcaattgag 6283946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 9977103 - 9977059
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||| ||||||||||| ||||| |||| ||||||||||||||||    
T  9977103 accttgcatatattatgcattatccataccaattgagttaagctc 9977059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 12459747 - 12459783
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcata 430  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  12459747 gaaccccgaaccttacatatattatgcattattcata 12459783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 454
Target Start/End: Original strand, 21331412 - 21331483
Alignment:
Q  383 ggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||||||||||| ||||||||| ||||||||||| ||| | |||| ||| |||| ||||||| ||||||    
T  21331412 ggccgagattcgaaccccgaaccttgcatatattatgcattgtccataacaactgagctaagctcacgagga 21331483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 448
Target Start/End: Complemental strand, 17755176 - 17755122
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcg 448  Q
    |||| ||||||||||||||||||||||||| ||| |||||| |||| ||||||||    
T  17755176 gaaccccgaaccttacatatattatgtattgttcctatcaactgagctaagctcg 17755122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 448
Target Start/End: Complemental strand, 19056496 - 19056442
Alignment:
Q  394 gaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcg 448  Q
    |||| ||||||||||||||||||||||||| ||| |||||| |||| ||||||||    
T  19056496 gaaccccgaaccttacatatattatgtattgttcctatcaactgagctaagctcg 19056442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 403 - 452
Target Start/End: Original strand, 10843796 - 10843845
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctcgcgag 452  Q
    ||||| |||||||||||||||||||||| ||| |||||||||||| ||||    
T  10843796 accttgcatatattatgtattattcataccaactgagttaagctcacgag 10843845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 454
Target Start/End: Original strand, 53633619 - 53633683
Alignment:
Q  390 attcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    |||||||| ||| ||||||||||||||||| ||||| | || ||| |||||||||||| ||||||    
T  53633619 attcgaaccccggaccttacatatattatgcattatccttaccaactgagttaagctcacgagga 53633683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 454
Target Start/End: Complemental strand, 7827566 - 7827503
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||||||  ||||||||||||||||| ||| | |||||||| |||||||| ||| ||||||    
T  7827566 ttcgaactccagaccttacatatattatgcattgtccatatcaactgagttaaactcacgagga 7827503  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 452
Target Start/End: Original strand, 46337231 - 46337294
Alignment:
Q  389 gattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 452  Q
    ||||| |||| || ||||||||||| ||||||||| |||||| | |||||||||||||| ||||    
T  46337231 gattcaaactgcggaccttacatattttatgtattgttcataccgattgagttaagctcacgag 46337294  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 447
Target Start/End: Original strand, 47099036 - 47099094
Alignment:
Q  389 gattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||| |||| ||||||||| ||||||||||| ||||||| |||||| |||| |||||||    
T  47099036 gatttgaaccccgaaccttgcatatattatgcattattcttatcaactgagctaagctc 47099094  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 454
Target Start/End: Complemental strand, 48376912 - 48376830
Alignment:
Q  372 ttttttacggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgagga 454  Q
    ||||||| || ||||| ||||||||| || |||||||||||||||||| |||||   || ||| |||| ||||||| ||||||    
T  48376912 ttttttatggcggccgggattcgaaccccaaaccttacatatattatgcattatctttaccaactgagctaagctcacgagga 48376830  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 444
Target Start/End: Complemental strand, 21160098 - 21160057
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaag 444  Q
    ||||||||||||||||| ||||| |||||||| |||||||||    
T  21160098 accttacatatattatgcattatccatatcaactgagttaag 21160057  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Original strand, 43630432 - 43630473
Alignment:
Q  402 aaccttacatatattatgtattattcatatcaattgagttaa 443  Q
    |||||||||||||||||| ||| |||||| ||||||||||||    
T  43630432 aaccttacatatattatgcattgttcataccaattgagttaa 43630473  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 45254294 - 45254261
Alignment:
Q  386 cgagattcgaactccgaaccttacatatattatg 419  Q
    ||||||||||||||| ||||||||||||||||||    
T  45254294 cgagattcgaactccaaaccttacatatattatg 45254261  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 444
Target Start/End: Original strand, 1743982 - 1744046
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaag 444  Q
    |||||||||  ||||||| ||||||||| ||||||||||||||| | |||| ||| ||| |||||    
T  1743982 ggtggccgaagttcgaaccccgaaccttgcatatattatgtattgtccataccaactgaattaag 1744046  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 447
Target Start/End: Original strand, 5941297 - 5941353
Alignment:
Q  391 ttcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||||| |||||||| | ||||||||||| ||| |||||| ||| ||||||||||||    
T  5941297 ttcgaattccgaaccatgcatatattatgcattgttcataccaactgagttaagctc 5941353  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 42785003 - 42784959
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||||||| |||||||||||| | |||||||| ||||||||||||    
T  42785003 accttacacatattatgtattgtccatatcaactgagttaagctc 42784959  T

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Target: scaffold0070 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 446
Target Start/End: Original strand, 42933 - 42990
Alignment:
Q  389 gattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagct 446  Q
    ||||||||  ||||||||| ||||||||||| ||||||| |||||| |||||||||||    
T  42933 gattcgaatcccgaaccttgcatatattatgcattattcttatcaactgagttaagct 42990  T

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Target: scaffold0445 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 447
Target Start/End: Complemental strand, 4539 - 4472
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    |||| ||| |||||||||||   ||||||||||||||||| ||||||| |||||| | ||||||||||    
T  4539 ggtgtccgggattcgaactctagaccttacatatattatgcattattcctatcaacttagttaagctc 4472  T

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Target: scaffold0312 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 427
Target Start/End: Original strand, 7971 - 8003
Alignment:
Q  395 aactccgaaccttacatatattatgtattattc 427  Q
    ||||||||||||||||||||||||| |||||||    
T  7971 aactccgaaccttacatatattatgcattattc 8003  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 452
Target Start/End: Complemental strand, 7542 - 7471
Alignment:
Q  380 ggtggccgagattcgaactccgaaccttacatatattatgtattattcatatcaattgagttaagctcgcgag 452  Q
    |||||||| ||||||||| | || | |||||||| ||||| ||| |||||| |||||||||||||||| ||||    
T  7542 ggtggccgggattcgaacccagatc-ttacatattttatgcattgttcataccaattgagttaagctcacgag 7471  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 122937 - 122893
Alignment:
Q  403 accttacatatattatgtattattcatatcaattgagttaagctc 447  Q
    ||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  122937 accttgcatatattatgcattgttcataccaattgagttaagctc 122893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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