View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20943_low_9 (Length: 527)
Name: NF20943_low_9
Description: NF20943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20943_low_9 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 20 - 525
Target Start/End: Original strand, 12045639 - 12046144
Alignment:
| Q |
20 |
gccggcaaccttcttggcggcattttcatcagccgcctctctccacaatccatgtttatgttttttggtcttcttgtagctctccaattcttcataacca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12045639 |
gccggcaaccttcttggcggcattttcatcagccgcctctctccacaatccatgtttatgttttttggtcttcttgttgctctccaattcttcataacca |
12045738 |
T |
|
| Q |
120 |
tttcgattcgcgaaagctctcttggacttccaaagaatccatctattgggataaagaaacagctttcagaactatcggctgcactaagaaaacccaaaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| ||||| |
|
|
| T |
12045739 |
tttcgattcgcgaaagctctcttggacttccaaagaatccatctattgggataaagaaacagctttcagaactataggaagcaataagaaaaccaaaaat |
12045838 |
T |
|
| Q |
220 |
cgcgtattcaatctcatggtttgcattatcttatgcagttgttcccttacttaacggaaccatgttcttttaccagacacaatacttgaaaatcgactcg |
319 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12045839 |
cgcatattcaatctcatggtttgcattatcttatgcagttgttcccttacttaacggaaccatgttcttttaccagacacaatacttgaaaatcgactcg |
12045938 |
T |
|
| Q |
320 |
tcagtattaggtatctccaaggcttttggtcaggaaacaatgcttctatggggcattatatataatcgatacctgaaatctatatcacctaggaaactga |
419 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12045939 |
tcagtattaggtatctccaaggtttttggtcaggcaacaatgcttctatggggcgttatatataatcgatacctgaaatctatatcacctaggaaactga |
12046038 |
T |
|
| Q |
420 |
tatcagcgattcaagcaacaattgcattcttaatgatttcagatgtcttatttgtgcacggcttctatagacaaatgggcgtgctggacacactctatgt |
519 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
12046039 |
tatcagcgattcaagaaacaattgcattcttaatgatttcagatgtcttatttgtgcgcggtttctatagacaaatgggcgtgccggatacactctatgt |
12046138 |
T |
|
| Q |
520 |
tgtgat |
525 |
Q |
| |
|
|||||| |
|
|
| T |
12046139 |
tgtgat |
12046144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 20 - 525
Target Start/End: Original strand, 12057195 - 12057700
Alignment:
| Q |
20 |
gccggcaaccttcttggcggcattttcatcagccgcctctctccacaatccatgtttatgttttttggtcttcttgtagctctccaattcttcataacca |
119 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
12057195 |
gccggcaaccttcttggtggcattttcatcagccgcttctctccacaatccatgtttatgttttttggccttcttgttgctctccaattcttcataaccg |
12057294 |
T |
|
| Q |
120 |
tttcgattcgcgaaagctctcttggacttccaaagaatccatctattgggataaagaaacagctttcagaactatcggctgcactaagaaaacccaaaat |
219 |
Q |
| |
|
||||| ||| |||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||| |
|
|
| T |
12057295 |
tttcggttcacgaaagctctctcggactttcaaagaatccatcaattgggataaagaaacagctttcagaactatctgccgcactaagaaaacctgaaat |
12057394 |
T |
|
| Q |
220 |
cgcgtattcaatctcatggtttgcattatcttatgcagttgttcccttacttaacggaaccatgttcttttaccagacacaatacttgaaaatcgactcg |
319 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12057395 |
cacgtattcaatctcatggtttgcattatcttatgcagttgttcccttacttaacggaaccatgttcatttaccagacacaatacttgaaaatcgactcg |
12057494 |
T |
|
| Q |
320 |
tcagtattaggtatctccaaggcttttggtcaggaaacaatgcttctatggggcattatatataatcgatacctgaaatctatatcacctaggaaactga |
419 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12057495 |
tcagtgttaggtatctccaaggtttttggtcaggaaacaatgcttctatggggtattatatataatcgatacctgaaatctatatcacctaggaaactga |
12057594 |
T |
|
| Q |
420 |
tatcagcgattcaagcaacaattgcattcttaatgatttcagatgtcttatttgtgcacggcttctatagacaaatgggcgtgctggacacactctatgt |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12057595 |
tatcagcgattcaagcaacaattgcattcttaatgatttcagatgtcttatttgtgcgcggtttctatagacaaatgggcgtgctggacacactctatgt |
12057694 |
T |
|
| Q |
520 |
tgtgat |
525 |
Q |
| |
|
|||||| |
|
|
| T |
12057695 |
tgtgat |
12057700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 25 - 525
Target Start/End: Original strand, 12049838 - 12050336
Alignment:
| Q |
25 |
caaccttcttggcggcattttcatcagccgcctctctccacaatccatgtttatgttttttggtcttcttgtagctctccaattcttcataaccatttcg |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| | || |||||||||||||||| |||||||||| |
|
|
| T |
12049838 |
caaccttcttggcggcattttcatcagccgcctct--ccacaatccatgtttatgtttttcagccttgtcgttgctctccaattcttcacaaccatttcg |
12049935 |
T |
|
| Q |
125 |
attcgcgaaagctctcttggacttccaaagaatccatctattgggataaagaaacagctttcagaactatcggctgcactaagaaaacccaaaatcgcgt |
224 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| ||||||| | |
|
|
| T |
12049936 |
gttcgcgaaagctctcttggacttccaaggaatccatctattgggataaagaaacagctttcagaactattggtcgcattaagaaaacctgaaatcgctt |
12050035 |
T |
|
| Q |
225 |
attcaatctcatggtttgcattatcttatgcagttgttcccttacttaacggaaccatgttcttttaccagacacaatacttgaaaatcgactcgtcagt |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12050036 |
attcaatctcatggtttgcattatcttatgcggttgttcccttacttaacggaaccatgttcttttaccagacacaatacttgaaaatcgactcgtcagt |
12050135 |
T |
|
| Q |
325 |
attaggtatctccaaggcttttggtcaggaaacaatgcttctatggggcattatatataatcgatacctgaaatctatatcacctaggaaactgatatca |
424 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12050136 |
attaggtatctccaaggtttttggtcaggcaacaatgcttctatggggcgttatatataatcgatacctgaaatctatatcacctaggaaactgatatca |
12050235 |
T |
|
| Q |
425 |
gcgattcaagcaacaattgcattcttaatgatttcagatgtcttatttgtgcacggcttctatagacaaatgggcgtgctggacacactctatgttgtga |
524 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
12050236 |
gcgattcaagtaacaattgcattcttaatgatttcagatgtcttatttgtgcgcggtttctatagacaaatgggcgtgccggatacactctatgttgtga |
12050335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 22 - 429
Target Start/End: Original strand, 12063392 - 12063791
Alignment:
| Q |
22 |
cggcaaccttcttggcggcattttcatcagccgcctctctccacaatccatgtttatgttttttggtcttcttgtagctctccaattcttcataaccatt |
121 |
Q |
| |
|
||||||||||||||| || ||||||||| ||| |||||||||||||||||||||||| |||| | ||||| || |||||||||||||||||||||||| |
|
|
| T |
12063392 |
cggcaaccttcttggtgggattttcatcggccatctctctccacaatccatgtttatggttttcagccttctcgttgctctccaattcttcataaccatt |
12063491 |
T |
|
| Q |
122 |
tcgattcgcgaaagctctcttggacttccaaagaatccatctattgggataaagaaacagctttcagaactatcggctgcactaagaaaacccaaaatcg |
221 |
Q |
| |
|
| | |||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| || | |||||||||||| ||||| |
|
|
| T |
12063492 |
ttggttcgcgaaagctctcttggactcccgaagaatccatcaattgggataaagaaacagctttcagaactatctgccgtactaagaaaacctgaaatca |
12063591 |
T |
|
| Q |
222 |
cgtattcaatctcatggtttgcattatcttatgcagttgttcccttacttaacggaaccatgttcttttaccagacacaatacttgaaaatcgactcgtc |
321 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| || |
|
|
| T |
12063592 |
tgtat--------atggtttgcattaccttatgcagttattcccttacttaacggaaccatgttcttttacgagacacaatacttaaaaatctactactc |
12063683 |
T |
|
| Q |
322 |
agtattaggtatctccaaggcttttggtcaggaaacaatgcttctatggggcattatatataatcgatacctgaaatctatatcacctaggaaactgata |
421 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12063684 |
ggtattacgtatctccaaggtttttggtcaggcaacaatgcttctacggggtgttatatataatcgatacttgaaatctatatcacctaggaaactgata |
12063783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 173 - 434
Target Start/End: Original strand, 12065569 - 12065835
Alignment:
| Q |
173 |
aagaaacagctttcagaactatcggctgcactaagaaaacccaaaatcgcgtattcaatctcatggtttgcattatcttatgcagttgttcccttactta |
272 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12065569 |
aagaaacaactttcagaactatcggttgcactaagaaaacccaaaatcgcttattaaatctcatggtttgcattatcttatgcagttattcccttactta |
12065668 |
T |
|
| Q |
273 |
acggaacc-----atgttcttttaccagacacaatacttgaaaatcgact-cgtcagtattaggtatctccaaggcttttggtcaggaaacaatgcttct |
366 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||| || | || |||||||| | ||||||| |||| |||| | |||||||||||| |
|
|
| T |
12065669 |
acggaaccatgtaatgttctttta-cagacacaatacttgaaaatcgcctccttcggtattaggca--tccaaggttttttgtcaagcaacaatgcttct |
12065765 |
T |
|
| Q |
367 |
atggggcat--tatatataatcgatacctgaaatctatatcacctaggaaactgatatcagcgattcaag |
434 |
Q |
| |
|
|||||| | |||||||||| ||||| ||||| | | | ||| |||||||||||||| |||| ||||| |
|
|
| T |
12065766 |
atggggtgttatatatataattcataccggaaatttgtcttaccgaggaaactgatatcggcgactcaag |
12065835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 172 - 372
Target Start/End: Original strand, 12052803 - 12053003
Alignment:
| Q |
172 |
aaagaaacagctttcagaactatcggctgcactaagaaaacccaaaatcgcgtattcaatctcatggtttgcattatcttatgcagttgttcccttactt |
271 |
Q |
| |
|
||||||||| ||||||||||||| || ||||||||||||| ||| |||| | ||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
12052803 |
aaagaaacaactttcagaactattggtcgcactaagaaaacataaattcgc-tggtcaatctcatggtttgcattatcttatgctgttattcccttactt |
12052901 |
T |
|
| Q |
272 |
aacggaaccatgttcttttaccagacacaatacttgaaaatcgactcgtc-agtattaggtatctccaaggcttttggtcaggaaacaatgcttctatgg |
370 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||| ||||| || |||||||| |||||||||| |||| ||| || |||||||||||||||| |
|
|
| T |
12052902 |
aacagaaccatgttcttttaccagacataatacttgaaaattgactcctcgggtattaggcatctccaaggttttttgtcgggcaacaatgcttctatgg |
12053001 |
T |
|
| Q |
371 |
gg |
372 |
Q |
| |
|
|| |
|
|
| T |
12053002 |
gg |
12053003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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