View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20944_high_10 (Length: 400)
Name: NF20944_high_10
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20944_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 24214278 - 24213880
Alignment:
| Q |
1 |
tatttcataaaccactttaataatggtgtgctagacccatatnnnnnnntataagaacccacgc---------aatcacatactttgaaggagtttgata |
91 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |||||||| |
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| T |
24214278 |
tatttcataaaccactttaataatggtgtgctagacccatataaaaaaatataagaacccacgcctgccacgcaatcgcatactttgaaggtgtttgata |
24214179 |
T |
|
| Q |
92 |
ttgcaaattccatttttgttgggaaaatcttgtatctccctgctaatctgattacatggttctgaacaagtacaattacataaatatcttgcatcaaaac |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24214178 |
ttgcaaattccatttttgttgggaaaatcttgtatctccctgctaatctgattacatggttctgaacaagtacaattacataaatatcttgcatcaaaac |
24214079 |
T |
|
| Q |
192 |
acaaccttacaaaaccatacatgtccaaccaaattatcagcattaacacagactcaaacagcacagttttaagctgtgcagtacatattccacttctact |
291 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24214078 |
acaaccttacaaaaccacacatgtccaaccaaattatcagcattaacacagactcaaacagcacagttttaagctgtgcagtacatattccacttctact |
24213979 |
T |
|
| Q |
292 |
agtcatcatcaatatagatagtctcttgcttgaacaggccaccaaataccttcctaacctccttcggtttctcttctatctttcttttttcctcctttg |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24213978 |
agtcatcatcaatatagatagtctcttgcttgaacaggccaccaaataccttcctaacctccttcggtttctcttctatctttcttttttcctcctttg |
24213880 |
T |
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