View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20944_high_11 (Length: 393)
Name: NF20944_high_11
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20944_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 32604998 - 32605195
Alignment:
| Q |
1 |
ccaatgagtggatgcacaattatgaaaggttttgatgaaactgaagaatctaaagcaccaagaacttcaacacaatggaagataagtcttaaccaa---g |
97 |
Q |
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| T |
32604998 |
ccaatgagtggatgcacaattatgaaaggttttgatgaaactgaagaatctaaagcaccaagaacttcaacacaatggaagataagtctcaactaagttg |
32605097 |
T |
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| Q |
98 |
tttatcctaaacaattacacacacttggtaaaaatggagtagaacattagaaaggcgccaatttctgctgagaacatttttacactcatacaaggttt |
195 |
Q |
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| T |
32605098 |
tttatcctaaacaattacacacacttggtaaaaatggagtagaaaattagaatggcgtcaatttctgccgagaacacttttacactcatacaaggttt |
32605195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 34402491 - 34402429
Alignment:
| Q |
297 |
tgaagcaatgcaatttaagaggaaggaaaatccatctcatccttgaacccagtcaaactcgaa |
359 |
Q |
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| T |
34402491 |
tgaagcaatgcaatttaagaggaagtaaaatccatctaatccttgaaaccagtcaaattcgaa |
34402429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 437720 - 437658
Alignment:
| Q |
300 |
agcaatgcaatttaagaggaaggaaaatccatctcatccttgaacccagtcaaactcgaagac |
362 |
Q |
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| T |
437720 |
agcaatgcaatttaggaggaaggaaaatagatctcatccttgaaccgagtgaaactcggagac |
437658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 13534482 - 13534426
Alignment:
| Q |
299 |
aagcaatgcaatttaagaggaaggaaaatccatctcatccttgaacccagtcaaact |
355 |
Q |
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| T |
13534482 |
aagcaatgcaatttaggaggaagggaaatccatcttatccttgaaccgagccaaact |
13534426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 13555749 - 13555686
Alignment:
| Q |
299 |
aagcaatgcaatttaagaggaaggaaaatccatctcatccttgaacccagtcaaactcgaagac |
362 |
Q |
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| T |
13555749 |
aagcaatacaatttaggaggaaggaaaatccatcttatcctagaaccgagccaaactcggagac |
13555686 |
T |
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