View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20944_high_18 (Length: 297)

Name: NF20944_high_18
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20944_high_18
NF20944_high_18
[»] chr5 (2 HSPs)
chr5 (6-278)||(26353517-26353789)
chr5 (27-278)||(9816314-9816565)
[»] chr3 (11 HSPs)
chr3 (61-278)||(26648411-26648628)
chr3 (54-274)||(20014792-20015012)
chr3 (30-277)||(17115330-17115570)
chr3 (125-272)||(20006865-20007012)
chr3 (99-278)||(26654449-26654628)
chr3 (142-275)||(20032898-20033029)
chr3 (132-273)||(20033036-20033177)
chr3 (106-247)||(19952486-19952627)
chr3 (133-191)||(19990590-19990648)
chr3 (174-276)||(19990652-19990753)
chr3 (30-91)||(20007037-20007098)
[»] chr1 (1 HSPs)
chr1 (50-275)||(1718433-1718658)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 6 - 278
Target Start/End: Complemental strand, 26353789 - 26353517
Alignment:
Q  6 gtccaagaatataactgttacggagcaagatcttcagttttgcccggatatttctgctcaagcagaagctaaagaaacggctgaaggacaaggaagaaag 105  Q
    |||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  26353789 gtccaacaatgtaactgttacggagcaagatcttcagtttttcccggatatttctgctcaagcagaagctaaagaaacggttgaaggacaaggaagaaaa 26353690  T
Q  106 gaaagtgatcatgaatttgtggtttggttaaaagagcaatacttgaaggatcaagaggaactcaggcgtctggcaagacaacaggaagagatgttacggt 205  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26353689 gaaagtgatcatgaacttgtggtttggttaaaagagcaatacttgaaggatcaagaggaactcaggcgtctggcaagacaacaggaagagatgttacgat 26353590  T
Q  206 taatagattcgaaggagaagagggatgaagagttgaggcaactcctcactagtgttctgaagaatcaacaacc 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26353589 taatagattcgaaggagaagagggatgaagagttgaggcaactcctcactagtgttctgaagaatcaacaacc 26353517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 27 - 278
Target Start/End: Original strand, 9816314 - 9816565
Alignment:
Q  27 ggagcaagatcttcagttttgcccggatatttctgctcaagcagaagctaaagaaacggctgaaggacaaggaagaaaggaaagtgatcatgaatttgtg 126  Q
    ||||||||||||||||||| || | |||||||||||||| ||||||||| |||||  || ||||| | |||||||||| ||||||||||||||  || ||    
T  9816314 ggagcaagatcttcagtttcgctctgatatttctgctcacgcagaagctgaagaagtggttgaagaaaaaggaagaaaagaaagtgatcatgatgttctg 9816413  T
Q  127 gtttggttaaaagagcaatacttgaaggatcaagaggaactcaggcgtctggcaagacaacaggaagagatgttacggttaatagattcgaaggagaaga 226  Q
    |||||||||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||||    
T  9816414 gtttggttaaaagagcaacacttgaaggatcaaaaggaacttaggcgtttggcaagacaacaagaagagatgtttcagttaatagatttgaaggagaaga 9816513  T
Q  227 gggatgaagagttgaggcaactcctcactagtgttctgaagaatcaacaacc 278  Q
    ||||||||||||||||||| || ||||||||| |||| ||||||||||||||    
T  9816514 gggatgaagagttgaggcatcttctcactagttttctcaagaatcaacaacc 9816565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 61 - 278
Target Start/End: Original strand, 26648411 - 26648628
Alignment:
Q  61 gctcaagcagaagctaaagaaacggctgaaggacaaggaagaaaggaaagtgatcatgaatttgtggtttggttaaaagagcaatacttgaaggatcaag 160  Q
    ||||||||| ||||||||||| ||| ||||| | ||||||| || ||||||||||||||| ||||||||| ||||||||||| |||||||||| | ||||    
T  26648411 gctcaagcacaagctaaagaagcggttgaagaaaaaggaaggaaagaaagtgatcatgaagttgtggttttgttaaaagagctatacttgaagaaccaag 26648510  T
Q  161 aggaactcaggcgtctggcaagacaacaggaagagatgttacggttaatagattcgaaggagaagagggatgaagagttgaggcaactcctcactagtgt 260  Q
    ||||||||||||| |||||||||||||| ||| ||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26648511 aggaactcaggcgcctggcaagacaacaagaaaagatgtttcagttaatagatttgaaggagaagagggatgaagagttgaggcaactcctcactagtgt 26648610  T
Q  261 tctgaagaatcaacaacc 278  Q
    ||| ||||||||||||||    
T  26648611 tctaaagaatcaacaacc 26648628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 54 - 274
Target Start/End: Complemental strand, 20015012 - 20014792
Alignment:
Q  54 tatttctgctcaagcagaagctaaagaaacggctgaaggacaaggaagaaaggaaagtgatcatgaatttgtggtttggttaaaagagcaatacttgaag 153  Q
    ||||||| |||||||| || ||||||||   | ||||| | || ||||||| |||||||||||||||  | ||||||  |||||||||||||||||||||    
T  20015012 tatttctactcaagcacaatctaaagaagaagttgaagtaaaaagaagaaaagaaagtgatcatgaagctttggttttcttaaaagagcaatacttgaag 20014913  T
Q  154 gatcaagaggaactcaggcgtctggcaagacaacaggaagagatgttacggttaatagattcgaaggagaagagggatgaagagttgaggcaactcctca 253  Q
     |||||||||||||||||| ||||||||||||||| || |||||||||||| |||| |||| ||||  ||||||||||||||||||||| ||||| ||||    
T  20014912 aatcaagaggaactcaggcttctggcaagacaacaagatgagatgttacggctaatggatttgaagatgaagagggatgaagagttgagacaacttctca 20014813  T
Q  254 ctagtgttctgaagaatcaac 274  Q
    ||||| |||| ||||||||||    
T  20014812 ctagttttctaaagaatcaac 20014792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 277
Target Start/End: Original strand, 17115330 - 17115570
Alignment:
Q  30 gcaagatcttcagttttgcccggatatttctgctcaagcagaagctaaagaaacggctgaaggacaaggaagaaaggaaagtgatcatgaatttgtggtt 129  Q
    ||||||||||||||||  | | |||||  ||||| ||||||||||||  ||||| | ||||||  ||||||||   |||||||||||||||  |||||||    
T  17115330 gcaagatcttcagtttcactccgatatggctgctaaagcagaagctatggaaacagttgaagggaaaggaaga---gaaagtgatcatgaaaatgtggtt 17115426  T
Q  130 tggttaaaagagcaatacttgaaggatcaagaggaactcaggcgtctggcaagacaacaggaagagatgttacggttaatagattcgaaggagaagaggg 229  Q
      | |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| |||||| | |||||| | || ||| ||||||||||    
T  17115427 ctgctaaaagagcaatacttgaagaatcaagacgaactcaggcgtctggcaagacaacatgaagtgatgtttcagttaatggctttgaaagagaagaggg 17115526  T
Q  230 atgaagagttgaggcaactcctcactagtgttctgaagaatcaacaac 277  Q
     ||||||    | ||||||||||||||||||||| | |||||| ||||    
T  17115527 gtgaaga----atgcaactcctcactagtgttctaaggaatcagcaac 17115570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 125 - 272
Target Start/End: Complemental strand, 20007012 - 20006865
Alignment:
Q  125 tggtttggttaaaagagcaatacttgaaggatcaagaggaactcaggcgtctggcaagacaacaggaagagatgttacggttaatagattcgaaggagaa 224  Q
    |||||| |||||||||||||||||||||| ||||||||||||||| || ||||||||||||||| || |||||||||  | |||| | || |  ||||||    
T  20007012 tggttttgttaaaagagcaatacttgaagaatcaagaggaactcacgcatctggcaagacaacaagaggagatgttagaggtaatggctttgtgggagaa 20006913  T
Q  225 gagggatgaagagttgaggcaactcctcactagtgttctgaagaatca 272  Q
    |||||||||||||||||| || ||||| ||||||||||| | ||||||    
T  20006912 gagggatgaagagttgagacacctccttactagtgttctaaggaatca 20006865  T

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Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 278
Target Start/End: Original strand, 26654449 - 26654628
Alignment:
Q  99 aagaaaggaaagtgatcatgaatttgtggtttggttaaaagagcaatacttgaaggatcaagaggaactcaggcgtctggcaagacaacaggaagagatg 198  Q
    |||||| ||||| ||| ||||| ||||| |||  || ||||||||   ||||||| ||||||||||| |    ||||| ||||||||||| |||||||||    
T  26654449 aagaaaagaaagagatgatgaagttgtgattttattgaaagagcatagcttgaagaatcaagaggaaatggcacgtctagcaagacaacaagaagagatg 26654548  T
Q  199 ttacggttaatagattcgaaggagaagagggatgaagagttgaggcaactcctcactagtgttctgaagaatcaacaacc 278  Q
    ||||| ||||| |||| || |||||| || |||||||||||||||||||| |||||||||||||| | ||||||||||||    
T  26654549 ttacgtttaatggatttgagggagaaaagagatgaagagttgaggcaacttctcactagtgttctaaggaatcaacaacc 26654628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 275
Target Start/End: Complemental strand, 20033029 - 20032898
Alignment:
Q  142 caatacttgaaggatcaagaggaactcaggcgtctggcaagacaacaggaagagatgttacggttaatagattcgaaggagaagagggatgaagagttga 241  Q
    |||||||||||| ||||||||||||||| || | | |||||||||||||||||||| || || ||| |   || || |||||||||||||||||||||||    
T  20033029 caatacttgaagaatcaagaggaactcaagcatgtagcaagacaacaggaagagatcttgcgattattgtctttgagggagaagagggatgaagagttga 20032930  T
Q  242 ggcaactcctcactagtgttctgaagaatcaaca 275  Q
    ||||| ||||  |||||||||| | |||||||||    
T  20032929 ggcaaatcct--ctagtgttctaaggaatcaaca 20032898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 273
Target Start/End: Complemental strand, 20033177 - 20033036
Alignment:
Q  132 gttaaaagagcaatacttgaaggatcaagaggaactcaggcgtctggcaagacaacaggaagagatgttacggttaatagattcgaaggagaagagggat 231  Q
    ||||||||||||| | |||||| |||||| |||||||   ||| | | | | |||||||||||||| || |||||| | | || || ||||||||| |||    
T  20033177 gttaaaagagcaacatttgaagaatcaaggggaactcgcacgtgtagtacgccaacaggaagagatcttgcggttattggctttgagggagaagagagat 20033078  T
Q  232 gaagagttgaggcaactcctcactagtgttctgaagaatcaa 273  Q
    |||||||||||||||||||| |||||||| || | |||||||    
T  20033077 gaagagttgaggcaactccttactagtgtcctaaggaatcaa 20033036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 247
Target Start/End: Original strand, 19952486 - 19952627
Alignment:
Q  106 gaaagtgatcatgaatttgtggtttggttaaaagagcaatacttgaaggatcaagaggaactcaggcgtctggcaagacaacaggaagagatgttacggt 205  Q
    ||||| ||||||||| | ||||||| || |||||| ||||||||||||  |||||| |||||   |||  ||| |||||| ||||| ||||| |||||||    
T  19952486 gaaagggatcatgaagtcgtggttttgtcaaaagaccaatacttgaagattcaagaagaactagcgcgcttgggaagacagcaggaggagatcttacggt 19952585  T
Q  206 taatagattcgaaggagaagagggatgaagagttgaggcaac 247  Q
    |||| | || || ||| ||||  |||||||||||||||||||    
T  19952586 taatggctttgagggaaaagaaagatgaagagttgaggcaac 19952627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 19990590 - 19990648
Alignment:
Q  133 ttaaaagagcaatacttgaaggatcaagaggaactcaggcgtctggcaagacaacagga 191  Q
    ||||||||| ||||||||||| |||||||||||||||  |||||||||||| |||||||    
T  19990590 ttaaaagagaaatacttgaagaatcaagaggaactcacacgtctggcaagagaacagga 19990648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 19990652 - 19990753
Alignment:
Q  174 tctggcaagacaacaggaagagatgttacggttaatagattcgaaggagaagagggatgaagagttgaggcaactcctcactagtgttctgaagaatcaa 273  Q
    ||||| |||||||||||||||| | |||| ||||||| |||| | |||||||||||| |||| | | | ||| ||||||||||||||||| | |||||||    
T  19990652 tctggaaagacaacaggaagaggtcttacagttaataaattcaagggagaagagggaagaagtg-tcaagcagctcctcactagtgttctaaggaatcaa 19990750  T
Q  274 caa 276  Q
    |||    
T  19990751 caa 19990753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 20007098 - 20007037
Alignment:
Q  30 gcaagatcttcagttttgcccggatatttctgctcaagcagaagctaaagaaacggctgaag 91  Q
    |||||| |||||||||  | | |||||  ||||||||||||||||||||||||||| |||||    
T  20007098 gcaagaccttcagtttcactctgatatggctgctcaagcagaagctaaagaaacggttgaag 20007037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 50 - 275
Target Start/End: Original strand, 1718433 - 1718658
Alignment:
Q  50 cggatatttctgctcaagcagaagctaaagaaacggctgaaggacaaggaagaaaggaaagtgatcatgaatttgtggtttggttaaaagagcaatactt 149  Q
    |||||||  ||||||||||||| ||||||||||| ||||||| | ||| |||  | | ||| ||| ||||| || |||||| |||||||||| ||| | |    
T  1718433 cggatatggctgctcaagcagacgctaaagaaacagctgaagaaaaagaaagggaagcaagagatgatgaagttatggttttgttaaaagaggaatgcat 1718532  T
Q  150 gaaggatcaagaggaactcaggcgtctggcaagacaacaggaagagatgttacggttaatagattcgaaggagaagagggatgaagagttgaggcaactc 249  Q
    |||| |||||||||| |||   |||||||||||||||||||||||||||||||||||||| | || |  |||||||| |||||||||||||||||||||     
T  1718533 gaagaatcaagaggagctcgcacgtctggcaagacaacaggaagagatgttacggttaatgggtttgtgggagaagaaggatgaagagttgaggcaacta 1718632  T
Q  250 ctcactagtgttctgaagaatcaaca 275  Q
    |||||||||||| ||| |||||||||    
T  1718633 ctcactagtgttttgaggaatcaaca 1718658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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