View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20944_high_20 (Length: 285)
Name: NF20944_high_20
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20944_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 134 - 273
Target Start/End: Original strand, 35344325 - 35344464
Alignment:
| Q |
134 |
gaagagaaacagttgaatctaattaccttaagaacatttggatggtggaggcgagataaaagcgtgacttccgtgaagaattgtttctctaatgtagcag |
233 |
Q |
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| T |
35344325 |
gaagagaaacagttgaatctaattaccttaagaacatttggatggtggaggcgagataaaagcgtgacttccgtgaagaattgtttgtctaatgtagcag |
35344424 |
T |
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| Q |
234 |
atattgttccgtgttcatcgtcatctggtaccttgatatt |
273 |
Q |
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| T |
35344425 |
ctattgttccgtgttcatcgtcatctggtaccttgatatt |
35344464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 134 - 273
Target Start/End: Complemental strand, 35361631 - 35361492
Alignment:
| Q |
134 |
gaagagaaacagttgaatctaattaccttaagaacatttggatggtggaggcgagataaaagcgtgacttccgtgaagaattgtttctctaatgtagcag |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35361631 |
gaagagaaacagttgaatctaattaccttaagaacatttggatggtggaggcgagataaaagcgtgacttccgtgaagaattgtttgtctaatgtagcag |
35361532 |
T |
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| Q |
234 |
atattgttccgtgttcatcgtcatctggtaccttgatatt |
273 |
Q |
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| T |
35361531 |
ctattgttccgtgttcatcgtcatctggtaccttgatatt |
35361492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 155 - 270
Target Start/End: Complemental strand, 35354763 - 35354648
Alignment:
| Q |
155 |
attaccttaagaacatttggatggtggaggcgagataaaagcgtgacttccgtgaagaattgtttctctaatgtagcagatattgttccgtgttcatcgt |
254 |
Q |
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| T |
35354763 |
attaccttaagaacattttgatggtggaggcgagataaaagtgtgacttctgtgatgaattgtttctctaatgtagcagccattgttccgttttcgtcat |
35354664 |
T |
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| Q |
255 |
catctggtaccttgat |
270 |
Q |
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|||| |||||| |||| |
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| T |
35354663 |
catccggtaccctgat |
35354648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 35344229 - 35344301
Alignment:
| Q |
35 |
taggatgtagaaaatagtatccctaattttctgtatggtttacctaactttccttatatatttatattccatt |
107 |
Q |
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| T |
35344229 |
taggatgtagaaaatagtatccctaattttctgtatggtttacctaacttttcttatatatttatattccatt |
35344301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 35361727 - 35361655
Alignment:
| Q |
35 |
taggatgtagaaaatagtatccctaattttctgtatggtttacctaactttccttatatatttatattccatt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35361727 |
taggatgtagaaaatagtatccctaattttctgtatggtttacctaactttacttatatatttatattccatt |
35361655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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