View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20944_high_25 (Length: 249)

Name: NF20944_high_25
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20944_high_25
NF20944_high_25
[»] chr6 (3 HSPs)
chr6 (1-230)||(34374225-34374454)
chr6 (44-146)||(11191585-11191687)
chr6 (66-127)||(10084610-10084671)
[»] chr4 (1 HSPs)
chr4 (48-237)||(10494392-10494581)
[»] chr8 (2 HSPs)
chr8 (31-237)||(2688632-2688831)
chr8 (1-43)||(40159256-40159298)
[»] chr7 (2 HSPs)
chr7 (41-229)||(11228124-11228312)
chr7 (180-237)||(1217638-1217695)
[»] chr2 (2 HSPs)
chr2 (45-237)||(32162394-32162589)
chr2 (186-237)||(280441-280492)
[»] chr3 (2 HSPs)
chr3 (83-205)||(3064194-3064316)
chr3 (150-235)||(8536813-8536898)
[»] chr1 (2 HSPs)
chr1 (163-237)||(40805442-40805516)
chr1 (164-228)||(31915122-31915186)
[»] scaffold0024 (2 HSPs)
scaffold0024 (160-237)||(145312-145389)
scaffold0024 (160-237)||(144335-144412)
[»] chr5 (2 HSPs)
chr5 (41-125)||(18251855-18251939)
chr5 (150-237)||(18251990-18252077)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 34374454 - 34374225
Alignment:
Q  1 cttcctcagatgccaaactttgctagaacaccgcctcatatgccgaagaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  34374454 cttcctcagatgccaaactttgctagaacaccgcctcatatgccgaagaaaccaccggatcgacgtgttgctacagatatcgaccaaccatctgattata 34374355  T
Q  101 ttactttacaaaaatttacaccactcagggaattgtcatttagtactatgattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctac 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||    
T  34374354 ttactttacaaaaatttacaccactcagtgaattgtcatttagtactatgattaaagtcgaggttaaaatgatggatctataatgtatccagcatgctac 34374255  T
Q  201 tacattttcttaatggtataaaggcaactg 230  Q
    |||||||||| |||||||||||||||||||    
T  34374254 tacattttctcaatggtataaaggcaactg 34374225  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 11191585 - 11191687
Alignment:
Q  44 cgaagaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactcagggaattgtcatttag 143  Q
    ||||||||||||||||||||  ||||| || || ||||||||||  |||||||||||||| ||||||||||||  ||||||||| ||| | ||||| |||    
T  11191585 cgaagaaaccaccggatcgatatgttgttatagttatcgaccaacaatctgattatgttattttacaaaaattgtcaccactcatggattggtcatctag 11191684  T
Q  144 tac 146  Q
    |||    
T  11191685 tac 11191687  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 10084610 - 10084671
Alignment:
Q  66 tgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactca 127  Q
    ||||| ||||| |||||||||| ||| ||||||||||| ||||||||||||  |||||||||    
T  10084610 tgttgttacaggtatcgaccaaccatttgattatgttattttacaaaaattgtcaccactca 10084671  T

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Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 48 - 237
Target Start/End: Original strand, 10494392 - 10494581
Alignment:
Q  48 gaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactcagggaattgtcatttagtact 147  Q
    |||||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||| |||||||||| ||| | ||||| ||||||     
T  10494392 gaaaccactggatcgacgtgttgctataggtatcgaccaaccatctgattatgttactttacaaaaattcacaccactcacggattggtcatctagtacc 10494491  T
Q  148 atgattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatt 237  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||  | ||||| |||| |||||||||||||||    
T  10494492 atgattaaagtcgaggctaaaatgatggatctagaaagtactcagcatgcttctacatttcttcaatgggataagggcaactgctatatt 10494581  T

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Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 237
Target Start/End: Original strand, 2688632 - 2688831
Alignment:
Q  31 ccgcctcatatgccgaagaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactcaggg 130  Q
    ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||       ||||||||  |    
T  2688632 ccgccgcagatgccgaagaaaccactggatcgacgtgttgctacagatatcgaccaaccatacgattatgttactttacaaa-------accactcacag 2688724  T
Q  131 aattgtcatttagtactatgattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactg 230  Q
    | | ||||| ||| || | ||||| |||||||||||||||||||||||||||| ||||||| ||||| |||| || |  | ||||| ||||||||||||     
T  2688725 attggtcatctagaaccacgattatagtcgaggctaaaatgatggatctagaaagtattcaacatgcaactatatctcttcaatgggataaaggcaacta 2688824  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 40159298 - 40159256
Alignment:
Q  1 cttcctcagatgccaaactttgctagaacaccgcctcatatgc 43  Q
    |||||||||||| ||| ||||||||||||||||||||||||||    
T  40159298 cttcctcagatgtcaagctttgctagaacaccgcctcatatgc 40159256  T

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Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 41 - 229
Target Start/End: Original strand, 11228124 - 11228312
Alignment:
Q  41 tgccgaagaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactcagggaattgtcatt 140  Q
    |||||||||||||||  ||| || |||||||||||  |||||||| | | ||||||||  |||||||||||||||| |||||||||| |||  ||||||     
T  11228124 tgccgaagaaaccactagattgatgtgttgctacaagtatcgacccaccctctgattacattactttacaaaaattcacaccactcaaggatgtgtcatc 11228223  T
Q  141 tagtactatgattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaact 229  Q
    |||||    |||||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||  | ||||| ||||||||||||    
T  11228224 tagtatccggattaaagtcaaggctaaaatgatggatctagaaagtatttagcatggtactacatttattcaatggcataaaggcaact 11228312  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 1217695 - 1217638
Alignment:
Q  180 agaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatt 237  Q
    |||| |||||| ||||| |||||||||| || ||||| ||||||||||||||||||||    
T  1217695 agaaagtattcggcatgatactacatttcctcaatgggataaaggcaactgctatatt 1217638  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 237
Target Start/End: Complemental strand, 32162589 - 32162394
Alignment:
Q  45 gaagaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactcagggaattgtcatttagt 144  Q
    ||||||||||  |||||||||||||| || || |||| ||||| ||||||||||||||| |||||| |||||  ||| ||||| ||| | ||||| ||||    
T  32162589 gaagaaaccattggatcgacgtgttgttataggtatcaaccaaccatctgattatgttaatttacagaaattcccactactcatggattggtcatctagt 32162490  T
Q  145 actatgattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttctt----aatggtataaaggcaactgctatatt 237  Q
    |||| |||||||||| ||| ||||||||| | |||| ||  |||||||||||||||||||||| |||    ||||| |||||||||||| |||||||    
T  32162489 actacgattaaagtctaggttaaaatgattggtctataagttattcagcatgctactacattt-cttcaaaaatggcataaaggcaactactatatt 32162394  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 280492 - 280441
Alignment:
Q  186 tattcagcatgctactacattttcttaatggtataaaggcaactgctatatt 237  Q
    ||||||||||||||||||||||  | ||||| ||||| ||||||||||||||    
T  280492 tattcagcatgctactacatttcttcaatggcataaaagcaactgctatatt 280441  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 3064316 - 3064194
Alignment:
Q  83 accaatcatctgattatgttactttacaaaaatttacaccactcagggaattgtcatttagtactatgattaaagtcgaggctaaaatgatggatctaga 182  Q
    ||||| ||| ||||||||||||||||||||||||| ||| ||||| ||| | ||||  |||||| | ||||||| |||| ||||||||||||||||||||    
T  3064316 accaaccatttgattatgttactttacaaaaatttccacaactcaaggattggtcacctagtaccacgattaaattcgaagctaaaatgatggatctaga 3064217  T
Q  183 atgtattcagcatgctactacat 205  Q
    | |||||  | ||||||||||||    
T  3064216 aagtatttggtatgctactacat 3064194  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 8536898 - 8536813
Alignment:
Q  150 gattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctata 235  Q
    ||||||| | |||||||||||||||||| ||||  |||||||||||| ||||| ||||  | ||||| ||||||||||||||||||    
T  8536898 gattaaatttgaggctaaaatgatggatttagagagtattcagcatgttactatatttcttcaatggcataaaggcaactgctata 8536813  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 40805442 - 40805516
Alignment:
Q  163 gctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatt 237  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  | ||||| |||||| |||||||||||||    
T  40805442 gctaaaatgatggatttagaatgtattcagcatgctactacatttcttcaatgggataaagacaactgctatatt 40805516  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 31915122 - 31915186
Alignment:
Q  164 ctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaac 228  Q
    ||||||||||||||||||||  |||||||||||||||| |||||  | ||||| |||||||||||    
T  31915122 ctaaaatgatggatctagaaaatattcagcatgctactgcatttcttcaatgggataaaggcaac 31915186  T

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Target: scaffold0024 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 145312 - 145389
Alignment:
Q  160 gaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatt 237  Q
    |||||||||||||||||| ||||  |||||| |||||||| |||||||  ||||||| ||||||||||||||||||||    
T  145312 gaggctaaaatgatggatttagagcgtattcggcatgctattacatttctttaatgggataaaggcaactgctatatt 145389  T

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Target: scaffold0024; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 144412 - 144335
Alignment:
Q  160 gaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatt 237  Q
    |||||||||||||||||| ||||  |||||| ||||||||||||||||  | ||||| |||||||||||| |||||||    
T  144412 gaggctaaaatgatggatttagagcgtattcggcatgctactacatttcttcaatgggataaaggcaactactatatt 144335  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 18251855 - 18251939
Alignment:
Q  41 tgccgaagaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccact 125  Q
    |||| |||||||||| ||||||| ||| |||||||| |||| ||||| ||||||||||| ||||||||||||||||  |||||||    
T  18251855 tgccaaagaaaccactggatcgatgtgatgctacaggtatcaaccaaccatctgattatattactttacaaaaattcccaccact 18251939  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 237
Target Start/End: Original strand, 18251990 - 18252077
Alignment:
Q  150 gattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatt 237  Q
    |||||||||||||||||||||||||||||| ||  ||||||   ||||||||||||||  | ||| | ||||||  ||||||||||||    
T  18251990 gattaaagtcgaggctaaaatgatggatctggatagtattcgaaatgctactacatttattcaataggataaagaaaactgctatatt 18252077  T

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