View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20944_high_29 (Length: 237)
Name: NF20944_high_29
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20944_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 45 - 222
Target Start/End: Complemental strand, 35344114 - 35343937
Alignment:
| Q |
45 |
tgatctgattgtgcagttggtagcagcatgcagaaacccacctgtttattgtgttatcacagagtatctatcggaaggttcattgaggaattatttgcac |
144 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
35344114 |
tgatctgattgtgcagttggtagcagcatgcagaaacccacctgtttattgtgttatcacagagtatctatcggaaggttcgttgaggagttatttgcac |
35344015 |
T |
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| Q |
145 |
aagttggagggaaaaacaatttctctgcagaaactaattgctttttctttggatattgctcgtggaatggaatatata |
222 |
Q |
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| T |
35344014 |
aagttggagggaaaaacgatttctctacagaaactaattgctttttctttggatattgctcgtggaatggaatatata |
35343937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 35361842 - 35362019
Alignment:
| Q |
45 |
tgatctgattgtgcagttggtagcagcatgcagaaacccacctgtttattgtgttatcacagagtatctatcggaaggttcattgaggaattatttgcac |
144 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
35361842 |
tgatctgattgtgcagttggtagcagcatgcagaaacccacctgtttattgtgttatcacagagtatctatcggaaggttcgttgaggagttatttgcac |
35361941 |
T |
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| Q |
145 |
aagttggagggaaaaacaatttctctgcagaaactaattgctttttctttggatattgctcgtggaatggaatatata |
222 |
Q |
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| T |
35361942 |
aagttggagggaaaaacgatttctctacagaaactaattgctttttctttggatattgctcgtggaatggaatatata |
35362019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 35355194 - 35355371
Alignment:
| Q |
45 |
tgatctgattgtgcagttggtagcagcatgcagaaacccacctgtttattgtgttatcacagagtatctatcggaaggttcattgaggaattatttgcac |
144 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||||||||| |||||||| |
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| T |
35355194 |
tgatctgattgtgcagttcgtagcagcatgcagaaagccacctgtttactgtgttatcacagaatatctattagaaggttcattgagggcatatttgcat |
35355293 |
T |
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| Q |
145 |
aagttggagggaaaaacaatttctctgcagaaactaattgctttttctttggatattgctcgtggaatggaatatata |
222 |
Q |
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||||||||||| |||| |||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35355294 |
aagttggaggggaaaatcatttctttacagaagctaattgctttttctctggatattgctcgtggaatggaatatata |
35355371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 35358103 - 35358184
Alignment:
| Q |
51 |
gattgtgcagttggtagcagcatgcagaaacccacctgtttattgtgttatcacagagtatctatcggaaggttcattgagg |
132 |
Q |
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||||| |||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35358103 |
gattgcgcagtttgtagcagcatgcagaaaagcatatgtttattgtgttatcacagagtatctatcggaaggttcgttgagg |
35358184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 3819981 - 3820138
Alignment:
| Q |
65 |
tagcagcatgcagaaacccacctgtttattgtgttatcacagagtatctatcggaaggttcattgaggaattatttgcacaagttggagggaaaaacaat |
164 |
Q |
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|||| ||| ||||||| ||||| ||||||||| |||||||||| |||||||| |||||||| ||||| |||||||| ||||||||| ||| | || |
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| T |
3819981 |
tagctgcaagcagaaatccaccggtttattgtattatcacagaatatctatctgaaggttccttgagagcatatttgcataagttggagcacaaagctat |
3820080 |
T |
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| Q |
165 |
ttctctgcagaaactaattgctttttctttggatattgctcgtggaatggaatatata |
222 |
Q |
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| |||| ||||| |||| |||||| || | |||||| |||||||||||| ||||||| |
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| T |
3820081 |
tcctctacagaagttaatagcttttgctcttgatatttctcgtggaatggcatatata |
3820138 |
T |
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