View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20944_high_32 (Length: 219)
Name: NF20944_high_32
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20944_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 33558086 - 33557891
Alignment:
| Q |
20 |
taaatataaaggtgtggtcggatggtacatatataaaaatgggtcattgttaatttaaaagattgaaaaatg-aagnnnnnnnnntattactagtatgtt |
118 |
Q |
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| T |
33558086 |
taaatataaaggtgtggtcggatggtacatatataaaaatgggtcattgttaatttaaaagattgaaaaatgaaaaaaaaataaaaattactagtatgtt |
33557987 |
T |
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| Q |
119 |
agatcggaaattgaatttgtgagtc----------atagagagtaatactaacacctcgcacgg-taaatattggtcttaccaaatatgtatgttg |
203 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33557986 |
agatcggaaattgaatttgtgagtcgattatgaatagagagagtaatactaacacctcgcacggttaaatattggtcttaccaaatatgtatgttg |
33557891 |
T |
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