View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20944_high_33 (Length: 217)
Name: NF20944_high_33
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20944_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 32593127 - 32592998
Alignment:
| Q |
20 |
ttctaataaactaaactatcccattaaaattgacattgtagagaatcaaacttaaaactttgagaacaaattatacactttcaaggactgaaatcatcat |
119 |
Q |
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| T |
32593127 |
ttctaataaactaaactatcccattgaaattgacattgtagagaatcgaacttaaaactttgagaacaa---atacactttcaaggactgaa---atcat |
32593034 |
T |
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| Q |
120 |
catcatcaaaccaacccaaatggcttgctaataagt |
155 |
Q |
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| T |
32593033 |
catcatcaaacaaacccaaatggcttgggaataagt |
32592998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 32592967 - 32592929
Alignment:
| Q |
163 |
tgtcactctttacatgacataaaaagtatatatacgtta |
201 |
Q |
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| T |
32592967 |
tgtcactctttacatgacataaaaagtatatatacgtta |
32592929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 32603085 - 32603046
Alignment:
| Q |
163 |
tgtcactctttacatgacataaaaagtatatatacgttac |
202 |
Q |
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||||||||||||||| |||||||||||||||||| ||||| |
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| T |
32603085 |
tgtcactctttacatcacataaaaagtatatatatgttac |
32603046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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