View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20944_high_34 (Length: 216)
Name: NF20944_high_34
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20944_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 40081868 - 40081671
Alignment:
| Q |
1 |
agtcctttgttttaacagaaatgttacttgcagacacaaaattgataaaaacacaatgtcccattgttcgtgtataagtgtaaattgtataagatgaaaa |
100 |
Q |
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| T |
40081868 |
agtcctttgttttaacagaaatgttacttgcagacacaaaattgataaaaacacaatgtcccattgttcgtgtataagtgtaaattgtataagatgaaaa |
40081769 |
T |
|
| Q |
101 |
ggcaagtgagaaatagagatcgagttatatggtgtcacgtgcaatgtcaaaattttgtgttcaagtaacataacttttgttcaaaattgtggctgtgt |
198 |
Q |
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| T |
40081768 |
ggcaagtgagaaatagagatcgagttatatggcgtcacgtgcaatgtctaaattttgtgttcaagtaacataacttttgttcaaaattgtggttgtgt |
40081671 |
T |
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