View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20944_high_6 (Length: 482)
Name: NF20944_high_6
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20944_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 40208822 - 40208357
Alignment:
| Q |
1 |
taaataacattttttgaactactcctccaagaaataactggggagtgcnnnnnnnnnnnnnnnnnnnnnnnngtgtaatattgtgcatggctagtttctt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40208822 |
taaataacattttttgaactactcctccaagaaataactggggagtgcaaaaagaaaaaaataaaaataaaagtgtaatattgtgcatggctagtttctt |
40208723 |
T |
|
| Q |
101 |
caaacttcagcacttnnnnnnnnnnnnnnntacgatcatcaccaatcaccaccaagttaccgttcctcttgttgatcacgttgatcacgagacgataacc |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208722 |
caaacttcagcacttcacacacacacacactacgatcatcaccaatcaccaccaagttaccgttcctcttgttgatcacgttgatcacgagacgataacc |
40208623 |
T |
|
| Q |
201 |
gaaaaacccacttagtgagtaaatttctctttgtgctttttgttgtaacaccattaacattgccggtggactcaacaacgaaagctttcaaccttttcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40208622 |
gaaaaacccacttagtgagtaaatttctctttgtgctttttgttgtaacaccattaacattgccagtggactcaacaacgaaagctttcaaccttttcat |
40208523 |
T |
|
| Q |
301 |
tgctagtttcaaagtctcttctgacatgtttgcgaaacacacacgaaaccaacctggttctgtacaatgacaagatgaaccaggtgaaatgtttaaacca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208522 |
tgctagtttcaaagtctcttctgacatgtttgcgaaacacacacgaaaccaacctggttctgtacaatgacaagatgaaccaggtgaaatgtttaaacca |
40208423 |
T |
|
| Q |
401 |
acttggtacactattttcttccatagttccatttcagcttcaaatgtgttggattggagaagatgc |
466 |
Q |
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| T |
40208422 |
acttggtacactattttcttccatagttccatttcagcttcaaatgtgttggaatggagaagatgc |
40208357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 290 - 447
Target Start/End: Original strand, 5134013 - 5134170
Alignment:
| Q |
290 |
aaccttttcattgctagtttcaaagtctcttctgacatgtttgcgaaacacacacgaaaccaacctggttctgtacaatgacaagatgaaccaggtgaaa |
389 |
Q |
| |
|
||||||||||| |||| || || || |||||||||||||| || ||||| ||||||||||| || ||||| || |||||||| || | ||||||||||| |
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| T |
5134013 |
aaccttttcatagctaagtttaatgtatcttctgacatgttagcaaaacaaacacgaaaccacccaggttcggtgcaatgacatgaagcaccaggtgaaa |
5134112 |
T |
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| Q |
390 |
tgtttaaaccaacttggtacactattttcttccatagttccatttcagcttcaaatgt |
447 |
Q |
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|||| || | ||| | | | | ||| ||||||||||| |||||||||||||||||||| |
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| T |
5134113 |
tgttcaaccgaacatcgaataatatcttcttccatagctccatttcagcttcaaatgt |
5134170 |
T |
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