View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20944_high_8 (Length: 436)

Name: NF20944_high_8
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20944_high_8
NF20944_high_8
[»] chr7 (3 HSPs)
chr7 (1-285)||(45048936-45049231)
chr7 (278-417)||(45049277-45049416)
chr7 (320-417)||(39711993-39712090)
[»] chr6 (5 HSPs)
chr6 (278-417)||(25573640-25573779)
chr6 (278-417)||(26008181-26008320)
chr6 (285-417)||(26126574-26126706)
chr6 (302-394)||(34986381-34986473)
chr6 (160-199)||(34985215-34985254)
[»] chr8 (2 HSPs)
chr8 (302-394)||(14937158-14937250)
chr8 (160-208)||(10671442-10671490)
[»] chr4 (1 HSPs)
chr4 (302-394)||(1060544-1060636)
[»] chr5 (3 HSPs)
chr5 (316-394)||(34028091-34028169)
chr5 (160-199)||(34026903-34026942)
chr5 (104-136)||(34025981-34026013)


Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 45048936 - 45049231
Alignment:
Q  1 tcactctcatcaaatcagcaaagaaatattagaaattcactcttcttcccaattttaaaatgatacttcaatcaagtatatggatttaaatgatgtacaa 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45048936 tcactctcatcaaatcagcaaagaaaaattagaaattcactcttcttcccaattttaaaatgatacttcaaccaagtatatggatttaaatgatgtacaa 45049035  T
Q  101 ttttttggttagctcttaattttttaaagaagcatattggacacatctctttcttttggttttgttattagtgattctcctttctttaaattggtctttc 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45049036 ttttttggttagctcttaattttttaaagaagcatattgcacacatctctttcttttggttttgttattagtgattctcctttctttaaattggtctttc 45049135  T
Q  201 aatttgattttgttatttgtaccttatttcaatttggtata-----------tatttgtaccttgattttgtgatggatatgtatacttcactata 285  Q
    |||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||| ||||    
T  45049136 aatttgattttgttatttgtaccttatttcaatttggtatatatttgtaccttatttgtaccttgattttgtgatggatatgtatacttcattata 45049231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 45049277 - 45049416
Alignment:
Q  278 tcactatagcaattcaaagtatcatcttgcttatgtgctatgatcaatgaaatatattagcatgatacgtacaagtaattagatacttttagtagatcat 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45049277 tcactatagcaattcaaagtatcatcttgcttatgtgctatgatcaatgaaatatattggcatgatacgtacaagtaattagatacttttagtagatcat 45049376  T
Q  378 cgtcatttttaaacttaaaatttgattgatgggatagaac 417  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45049377 cgtcatttttaaacttaaaatttgattgatgggatagaac 45049416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 320 - 417
Target Start/End: Original strand, 39711993 - 39712090
Alignment:
Q  320 atcaatgaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcgtcatttttaaacttaaaatttgattgatgggatagaac 417  Q
    |||||||||||||||||||||| ||| || ||||||||||||||| ||||| ||||||||||  |||||| ||||||||  |||||||| || |||||    
T  39711993 atcaatgaaatatattagcatggtacatataagtaattagatactcttagttgatcatcgtccgttttaagcttaaaatgagattgatgagagagaac 39712090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 5e-66; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 25573640 - 25573779
Alignment:
Q  278 tcactatagcaattcaaagtatcatcttgcttatgtgctatgatcaatgaaatatattagcatgatacgtacaagtaattagatacttttagtagatcat 377  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25573640 tcactagagcaattaaaagtatcatcttgcttatgtgctatgatcaatgaaatatattagcatgatacgtacaagtaattagatacttttagtagatcat 25573739  T
Q  378 cgtcatttttaaacttaaaatttgattgatgggatagaac 417  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  25573740 cgtcatttttaaacttaaaattagattgatgggatagaac 25573779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 26008181 - 26008320
Alignment:
Q  278 tcactatagcaattcaaagtatcatcttgcttatgtgctatgatcaatgaaatatattagcatgatacgtacaagtaattagatacttttagtagatcat 377  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26008181 tcactagagcaattaaaagtatcatcttgcttatgtgctatgatcaatgaaatatattagcatgatacgtacaagtaattagatacttttagtagatcat 26008280  T
Q  378 cgtcatttttaaacttaaaatttgattgatgggatagaac 417  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  26008281 cgtcatttttaaacttaaaattagattgatgggatagaac 26008320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 285 - 417
Target Start/End: Original strand, 26126574 - 26126706
Alignment:
Q  285 agcaattcaaagtatcatcttgcttatgtgctatgatcaatgaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcgtcatt 384  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26126574 agcaattaaaagtatcatcttgcttatttgctatgatcaatgaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcgtcatt 26126673  T
Q  385 tttaaacttaaaatttgattgatgggatagaac 417  Q
    ||||||||||||||| |||||||||||||||||    
T  26126674 tttaaacttaaaattagattgatgggatagaac 26126706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 394
Target Start/End: Original strand, 34986381 - 34986473
Alignment:
Q  302 tcttgcttatgtgctatgatcaatgaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcgtcatttttaaactta 394  Q
    |||||||||||   ||||||||||||||||  |||| ||||||| |  ||||||||| ||||||||||||||| ||||| |||||||||||||    
T  34986381 tcttgcttatgctttatgatcaatgaaatactttaggatgatacatttaagtaattaaatacttttagtagattatcgttatttttaaactta 34986473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 34985215 - 34985254
Alignment:
Q  160 ttttgttattagtgattctcctttctttaaattggtcttt 199  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  34985215 ttttgttattagtgattttcctttctttcaattggtcttt 34985254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 394
Target Start/End: Original strand, 14937158 - 14937250
Alignment:
Q  302 tcttgcttatgtgctatgatcaatgaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcgtcatttttaaactta 394  Q
    |||||||||||   ||||||||||||||||  |||| ||||||| |  ||||||||| ||||||||||||||| ||||| |||||||||||||    
T  14937158 tcttgcttatgctttatgatcaatgaaatactttaggatgatacatttaagtaattaaatacttttagtagattatcgttatttttaaactta 14937250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 10671490 - 10671442
Alignment:
Q  160 ttttgttattagtgattctcctttctttaaattggtctttcaatttgat 208  Q
    |||||||||| ||||||||||||||||| |||||||||||  |||||||    
T  10671490 ttttgttatttgtgattctcctttctttcaattggtctttgtatttgat 10671442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 394
Target Start/End: Complemental strand, 1060636 - 1060544
Alignment:
Q  302 tcttgcttatgtgctatgatcaatgaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcgtcatttttaaactta 394  Q
    |||||||||||   ||||||||||||||||  |||| ||||||| |  ||||||||| ||||||||||||||| ||||| |||||||||||||    
T  1060636 tcttgcttatgctttatgatcaatgaaatactttaggatgatacatttaagtaattaaatacttttagtagattatcgttatttttaaactta 1060544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 394
Target Start/End: Original strand, 34028091 - 34028169
Alignment:
Q  316 tatgatcaatgaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcgtcatttttaaactta 394  Q
    ||||||||||||||||  |||| ||||||| |  ||||||||| ||||||||||||||| ||||| |||||||||||||    
T  34028091 tatgatcaatgaaatactttaggatgatacatttaagtaattaaatacttttagtagattatcgttatttttaaactta 34028169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 34026903 - 34026942
Alignment:
Q  160 ttttgttattagtgattctcctttctttaaattggtcttt 199  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  34026903 ttttgttattagtgattttcctttctttcaattggtcttt 34026942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 34025981 - 34026013
Alignment:
Q  104 tttggttagctcttaattttttaaagaagcata 136  Q
    ||||||||||||||||||||| |||||||||||    
T  34025981 tttggttagctcttaatttttgaaagaagcata 34026013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University