View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20944_low_10 (Length: 419)
Name: NF20944_low_10
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20944_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 372
Target Start/End: Original strand, 3293635 - 3293991
Alignment:
| Q |
16 |
atccaagtatagtactataagataagattaaaaagtgcatcatattgtatattgtccaataaccatatcatgatcagaatcgaatctggtaataaaaaca |
115 |
Q |
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| T |
3293635 |
atccaagtatagtactataagataagattaaaaagtgcatcatattgtatattgtccaataaccatatcatgatcagaatcgaatctggtaataaaaaca |
3293734 |
T |
|
| Q |
116 |
ctaaacatttgttaggaaaccgcgtcttcttcaatgtttccttaaaacaggcactaacatgtaaacttggagccaagagatatcatagtattgcatatct |
215 |
Q |
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| T |
3293735 |
ctaaacatttgttaggaaaccgcgtcttcttcaatgtttccttaaaacaggcactaacatgtaaacttggagccaagagatatcatagtattgcatatct |
3293834 |
T |
|
| Q |
216 |
tattgtatataaaatcctactatacttacgtaacactaaagctagcttctctttacaannnnnnnaaggtaaattgaattctgaaaactcacttaattta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3293835 |
tattgtatataaaatcctactatacttacgtaacactaaagctagcttctctttacaatttttttaaggtaaattgaattctgaaaactcacttaattta |
3293934 |
T |
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| Q |
316 |
gtgaaagttcaaaatataaaaagttgccgacaaagtttttacatattttttatttgc |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3293935 |
gtgaaagttcaaaatataaaaagttgccgacaaagtttttacatattttttatttgc |
3293991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 372 - 403
Target Start/End: Original strand, 3294017 - 3294048
Alignment:
| Q |
372 |
ccaaataggtattcacatcaagaacacaattc |
403 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3294017 |
ccaaataggtattcacatcaagaacacaattc |
3294048 |
T |
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