View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20944_low_11 (Length: 405)

Name: NF20944_low_11
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20944_low_11
NF20944_low_11
[»] chr1 (7 HSPs)
chr1 (1-389)||(26265530-26265923)
chr1 (249-314)||(31784776-31784841)
chr1 (249-314)||(37918918-37918983)
chr1 (252-312)||(5693581-5693641)
chr1 (247-320)||(3693989-3694062)
chr1 (243-314)||(27527703-27527774)
chr1 (274-306)||(38067162-38067194)
[»] chr4 (8 HSPs)
chr4 (243-319)||(12276856-12276932)
chr4 (250-319)||(54235227-54235296)
chr4 (251-320)||(5496857-5496926)
chr4 (249-313)||(2871540-2871604)
chr4 (249-313)||(4423191-4423255)
chr4 (243-320)||(30848588-30848667)
chr4 (247-320)||(55617011-55617085)
chr4 (247-320)||(55624315-55624389)
[»] chr2 (14 HSPs)
chr2 (239-319)||(16180429-16180509)
chr2 (247-319)||(41374531-41374603)
chr2 (249-311)||(16564420-16564482)
chr2 (250-319)||(944807-944876)
chr2 (243-312)||(4445862-4445931)
chr2 (242-319)||(43042202-43042279)
chr2 (251-319)||(43398844-43398912)
chr2 (251-314)||(24037590-24037653)
chr2 (247-305)||(41099028-41099086)
chr2 (273-319)||(7932779-7932825)
chr2 (249-319)||(10459302-10459372)
chr2 (249-319)||(38935367-38935437)
chr2 (250-319)||(35311190-35311258)
chr2 (249-313)||(25089919-25089983)
[»] chr6 (7 HSPs)
chr6 (249-319)||(31323850-31323920)
chr6 (233-306)||(14222842-14222915)
chr6 (249-314)||(30531219-30531284)
chr6 (251-313)||(1937687-1937749)
chr6 (251-320)||(35003794-35003863)
chr6 (247-320)||(13422167-13422240)
chr6 (249-314)||(30531182-30531247)
[»] chr5 (12 HSPs)
chr5 (274-320)||(19644427-19644473)
chr5 (249-319)||(34252753-34252823)
chr5 (251-319)||(2424444-2424512)
chr5 (249-320)||(20185317-20185388)
chr5 (251-320)||(9530948-9531017)
chr5 (250-319)||(25467111-25467180)
chr5 (242-319)||(39030599-39030676)
chr5 (243-319)||(9956496-9956572)
chr5 (273-313)||(33498403-33498443)
chr5 (243-319)||(33669925-33670001)
chr5 (250-313)||(12619661-12619724)
chr5 (245-314)||(30293417-30293486)
[»] scaffold0009 (1 HSPs)
scaffold0009 (248-320)||(51224-51296)
[»] chr8 (7 HSPs)
chr8 (247-310)||(29797942-29798005)
chr8 (273-313)||(9548077-9548117)
chr8 (247-319)||(35901037-35901109)
chr8 (271-313)||(8777811-8777853)
chr8 (251-319)||(29110965-29111033)
chr8 (251-311)||(37627916-37627976)
chr8 (272-313)||(9294588-9294629)
[»] chr3 (9 HSPs)
chr3 (249-320)||(26914454-26914524)
chr3 (251-319)||(37330963-37331031)
chr3 (249-319)||(32221474-32221544)
chr3 (250-320)||(45610469-45610539)
chr3 (242-319)||(18364204-18364280)
chr3 (251-320)||(29637439-29637508)
chr3 (251-320)||(46733052-46733121)
chr3 (242-319)||(47783114-47783191)
chr3 (251-303)||(32729508-32729560)
[»] chr7 (7 HSPs)
chr7 (249-319)||(18731994-18732064)
chr7 (250-320)||(32652411-32652481)
chr7 (250-319)||(44816503-44816572)
chr7 (250-314)||(3719918-3719982)
chr7 (251-313)||(23971191-23971253)
chr7 (250-320)||(36035281-36035351)
chr7 (247-319)||(3769755-3769827)
[»] scaffold0034 (1 HSPs)
scaffold0034 (251-320)||(94981-95050)
[»] scaffold0097 (1 HSPs)
scaffold0097 (251-319)||(37947-38015)
[»] scaffold0027 (1 HSPs)
scaffold0027 (251-319)||(13210-13278)


Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 26265530 - 26265923
Alignment:
Q  1 aacacttcttcgacctattgtgttcacatgttctaccatatttggcttctatattnnnnnnnntgaggagttataattagtaattagtaaaattaagaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  26265530 aacacttcttcgacctattgtgttcacatgttctaccatatttggcttctatattaaaaaaaatgaggagttataattagtaattagtaaaattaagaat 26265629  T
Q  101 taaataatgaaaattgaagcattgattgaagaaagtaaaaatagcatttacttgttatgt--------gcgtgtaacttaattgatagctatcaagaata 192  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  26265630 taaataatgaaaatttaagcattgattgaagaaagtaaaaatagcatttacttgttatgttgttatgtgcgtgtaacttaattgatagctatcaagaata 26265729  T
Q  193 ttatgtgtagaagttgaaattcgaacatcaaatttttcatacatattttctccattccaaaatgtaagcaaaaatatgttaacataagttgatgtattta 292  Q
    |   ||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26265730 t---gtgtagaggttgaacttcgaacatcaaatttttcatatatattttctccattccaaaatgtaagcaaaaatatgttaacataagttgatgtattta 26265826  T
Q  293 gtataaattttgaaccaaatactttaatccttgagtctgctccagcatcttgtattctagaattttttatcagttcagatctagagttgttaccatt 389  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26265827 gtataaattttgaaccaaatactttaatccttgagtccgctccagcatcttgtattctagaattttttatcagttcagatctagagttgttaccatt 26265923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 31784841 - 31784776
Alignment:
Q  249 ccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatac 314  Q
    ||||||||||||||||||| ||| ||||||||||||||||| || || ||||||||||| ||||||    
T  31784841 ccaaaatgtaagcaaaaatttgtcaacataagttgatgtatctaatacaaattttgaacaaaatac 31784776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 37918918 - 37918983
Alignment:
Q  249 ccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatac 314  Q
    |||||||||||||||||||   | |||||||||||||||||||  |||||||||| ||||||||||    
T  37918918 ccaaaatgtaagcaaaaatgaatcaacataagttgatgtatttgatataaattttaaaccaaatac 37918983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 5693581 - 5693641
Alignment:
Q  252 aaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaat 312  Q
    |||||||||||||||||| | ||||||| ||||||| ||||||| ||||||| ||||||||    
T  5693581 aaatgtaagcaaaaatatatcaacataaattgatgtttttagtacaaattttaaaccaaat 5693641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 320
Target Start/End: Original strand, 3693989 - 3694062
Alignment:
Q  247 ttccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaat 320  Q
    |||||||||||||| | ||||  || ||||||| |||||||||||| || |||||||||| ||||||| |||||    
T  3693989 ttccaaaatgtaagtagaaatgagtcaacataaattgatgtatttaatacaaattttgaatcaaatacattaat 3694062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 27527703 - 27527774
Alignment:
Q  243 tccattccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatac 314  Q
    ||||| ||||||| |||  ||||||  || || |||||||||||||| | ||||||||||||||||||||||    
T  27527703 tccatcccaaaatataaataaaaatgggtaaatataagttgatgtatctggtataaattttgaaccaaatac 27527774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 306
Target Start/End: Original strand, 38067162 - 38067194
Alignment:
Q  274 acataagttgatgtatttagtataaattttgaa 306  Q
    |||||| ||||||||||||||||||||||||||    
T  38067162 acataaattgatgtatttagtataaattttgaa 38067194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 319
Target Start/End: Complemental strand, 12276932 - 12276856
Alignment:
Q  243 tccattccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    ||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||| ||||||| ||||    
T  12276932 tccattccaaaatataagcaaaaataggtcaacataagttgatgtatttagtataaattttgaatcaaatacattaa 12276856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 54235227 - 54235296
Alignment:
Q  250 caaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    ||||||||||||||||||  || || |||| ||||||||||||||| |||||||||||||||||| ||||    
T  54235227 caaaatgtaagcaaaaatgagtcaatataaattgatgtatttagtacaaattttgaaccaaatacattaa 54235296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 320
Target Start/End: Original strand, 5496857 - 5496926
Alignment:
Q  251 aaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaat 320  Q
    ||||||||| |||||||  || || |||||||||| ||||| ||| |||||||||||||||||| |||||    
T  5496857 aaaatgtaaacaaaaatgagtcaatataagttgatttatttggtacaaattttgaaccaaatacattaat 5496926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 2871604 - 2871540
Alignment:
Q  249 ccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaata 313  Q
    ||||||| |||||||||||  || |||| |||||||||||||| |||||||||||  ||||||||    
T  2871604 ccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaata 2871540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 4423255 - 4423191
Alignment:
Q  249 ccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaata 313  Q
    |||||||||||||||||||   | || |||||||||||||||| ||| |||||||||| ||||||    
T  4423255 ccaaaatgtaagcaaaaatggatcaatataagttgatgtatttggtacaaattttgaatcaaata 4423191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 320
Target Start/End: Original strand, 30848588 - 30848667
Alignment:
Q  243 tccattccaaaatgtaagcaaaaatatgttaacataagttgatgtattta--gtataaattttgaaccaaatactttaat 320  Q
    ||||| |||||||||||||||||||   | ||||||||||||||||| ||  ||| ||||||||||| |||||| |||||    
T  30848588 tccatcccaaaatgtaagcaaaaatggatcaacataagttgatgtatctaatgtacaaattttgaacaaaatacattaat 30848667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 320
Target Start/End: Original strand, 55617011 - 55617085
Alignment:
Q  247 ttccaaaatgtaagcaaaaatatgttaacat-aagttgatgtatttagtataaattttgaaccaaatactttaat 320  Q
    ||||||||| |||||||||||| |||||||| || || |||||||||||| |||||||  || |||||| |||||    
T  55617011 ttccaaaatataagcaaaaataggttaacataaaattaatgtatttagtacaaattttatactaaatacattaat 55617085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 320
Target Start/End: Original strand, 55624315 - 55624389
Alignment:
Q  247 ttccaaaatgtaagcaaaaatatgttaacat-aagttgatgtatttagtataaattttgaaccaaatactttaat 320  Q
    ||||||||| |||||||||||| |||||||| || || |||||||||||| |||||||  || |||||| |||||    
T  55624315 ttccaaaatataagcaaaaataggttaacataaaattaatgtatttagtacaaattttatactaaatacattaat 55624389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 16180429 - 16180509
Alignment:
Q  239 tttctccattccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    ||||||| | |||||||||||||||||||  || ||||||| |||||||||| | ||||||||||||||||||||| ||||    
T  16180429 tttctccgtcccaaaatgtaagcaaaaattagtcaacataaattgatgtattaaatataaattttgaaccaaatacattaa 16180509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 319
Target Start/End: Original strand, 41374531 - 41374603
Alignment:
Q  247 ttccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    |||||||||||||||||||||  || |||| |||||||||||||| ||||||| |||||| ||||||| ||||    
T  41374531 ttccaaaatgtaagcaaaaatgagtgaacacaagttgatgtatttggtataaactttgaatcaaatacattaa 41374603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 16564482 - 16564420
Alignment:
Q  249 ccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaa 311  Q
    |||||||||||| ||||||  || ||||||||||||||||||| ||| |||||||||||||||    
T  16564482 ccaaaatgtaagtaaaaatgagtcaacataagttgatgtatttggtacaaattttgaaccaaa 16564420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 944876 - 944807
Alignment:
Q  250 caaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    ||||||||||| ||||||  || ||||||||||||||||||| ||| ||||||||||| |||||| ||||    
T  944876 caaaatgtaagtaaaaattagtcaacataagttgatgtatttggtacaaattttgaactaaatacattaa 944807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 4445862 - 4445931
Alignment:
Q  243 tccattccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaat 312  Q
    ||||| ||||||| |||||||||||| ||||| |||| ||||||||||| ||| ||||||||||| ||||    
T  4445862 tccatcccaaaatataagcaaaaataagttaatataaattgatgtatttggtacaaattttgaacaaaat 4445931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 319
Target Start/End: Complemental strand, 43042279 - 43042202
Alignment:
Q  242 ctccattccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    |||||| |||||||||||||||||||  || |||| |||||||||||| |  ||||||||||||||| ||||| ||||    
T  43042279 ctccatcccaaaatgtaagcaaaaatgagtaaacaaaagttgatgtatctgatataaattttgaaccgaatacattaa 43042202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 43398844 - 43398912
Alignment:
Q  251 aaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    |||||||||| ||||||  || || |||||||||||||||| ||| |||||||||||||||||| ||||    
T  43398844 aaaatgtaagtaaaaatgggtcaatataagttgatgtatttggtacaaattttgaaccaaatacattaa 43398912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 24037590 - 24037653
Alignment:
Q  251 aaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatac 314  Q
    |||||||||||||||||  || ||||||||||||| ||||| ||| ||||||||||| ||||||    
T  24037590 aaaatgtaagcaaaaatgagtcaacataagttgatatatttggtacaaattttgaacaaaatac 24037653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 41099086 - 41099028
Alignment:
Q  247 ttccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttga 305  Q
    |||||||||||||||||||||  || |||||||||| |||||||| ||| |||||||||    
T  41099086 ttccaaaatgtaagcaaaaatgggtcaacataagttaatgtatttggtacaaattttga 41099028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 7932825 - 7932779
Alignment:
Q  273 aacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    ||||||||||||||||| |  ||||||||||||||||||||| ||||    
T  7932825 aacataagttgatgtatctgatataaattttgaaccaaatacgttaa 7932779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 10459372 - 10459302
Alignment:
Q  249 ccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    |||||||||||||||| ||  || |||||||||||||| || |  || |||||||||||||||||| ||||    
T  10459372 ccaaaatgtaagcaaagattggtcaacataagttgatgcatctgatacaaattttgaaccaaatacattaa 10459302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 38935367 - 38935437
Alignment:
Q  249 ccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    ||||||| |||||||||||  || |||||||||||||||||||  || | ||||||||| |||||| ||||    
T  38935367 ccaaaatataagcaaaaatgagtcaacataagttgatgtatttgatacagattttgaacaaaatacattaa 38935437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 35311190 - 35311258
Alignment:
Q  250 caaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    ||||||||||||||||||  || |||||||||| || ||| | ||| |||||||||||||||||| ||||    
T  35311190 caaaatgtaagcaaaaatgggtcaacataagtt-atatatcttgtacaaattttgaaccaaatacattaa 35311258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 25089919 - 25089983
Alignment:
Q  249 ccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaata 313  Q
    |||||||||||| ||||||   ||||||||||||| |||||||  || |||||||||| ||||||    
T  25089919 ccaaaatgtaagaaaaaatggattaacataagttgttgtatttgatacaaattttgaagcaaata 25089983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 31323920 - 31323850
Alignment:
Q  249 ccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    |||||||||||||||||||| || ||||||||||||||||| | ||| ||||||||||| |||||| ||||    
T  31323920 ccaaaatgtaagcaaaaataggtcaacataagttgatgtatctggtacaaattttgaacaaaatacattaa 31323850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 14222915 - 14222842
Alignment:
Q  233 acatattttctccattccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaa 306  Q
    ||||||| ||||  |||||||||||||||||||||  || ||||||||||||||||| | || |||||||||||    
T  14222915 acatattgtctctgttccaaaatgtaagcaaaaatgggtcaacataagttgatgtatatggtgtaaattttgaa 14222842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 30531284 - 30531219
Alignment:
Q  249 ccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatac 314  Q
    |||||||||||||||||||   | ||||||||||||||||||| ||| ||| ||||||||||||||    
T  30531284 ccaaaatgtaagcaaaaatgactcaacataagttgatgtatttggtacaaactttgaaccaaatac 30531219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 1937749 - 1937687
Alignment:
Q  251 aaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaata 313  Q
    |||||||||||||||||   |||| ||||||||||| |||||||||||||||| || ||||||    
T  1937749 aaaatgtaagcaaaaatgaattaatataagttgatgaatttagtataaattttaaatcaaata 1937687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 35003863 - 35003794
Alignment:
Q  251 aaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaat 320  Q
    |||||||||||||||||   | ||||||||||||| ||||| ||| |||||||||| ||||||| |||||    
T  35003863 aaaatgtaagcaaaaatgaatcaacataagttgatatattttgtacaaattttgaatcaaatacattaat 35003794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 13422240 - 13422167
Alignment:
Q  247 ttccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaat 320  Q
    |||||||||||||  ||||||| |||||||||| || || ||| | ||||||||||| || ||||||| |||||    
T  13422240 ttccaaaatgtaaataaaaataggttaacataaattaatatatctggtataaattttaaatcaaatacattaat 13422167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 30531182 - 30531247
Alignment:
Q  249 ccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatac 314  Q
    ||||||||||||||||||   || ||||||||||||||||||| ||  ||| |||| |||||||||    
T  30531182 ccaaaatgtaagcaaaaacgggtcaacataagttgatgtatttggttcaaagtttgtaccaaatac 30531247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 19644427 - 19644473
Alignment:
Q  274 acataagttgatgtatttagtataaattttgaaccaaatactttaat 320  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  19644427 acataagttgatgtatttagtataaattttgaaccaaatacgttaat 19644473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 34252823 - 34252753
Alignment:
Q  249 ccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    |||||||||||||||||||  ||||||||||||||||| || | | |||||||||||||||||||| ||||    
T  34252823 ccaaaatgtaagcaaaaatgggttaacataagttgatgaatgtggcataaattttgaaccaaatacattaa 34252753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 2424444 - 2424512
Alignment:
Q  251 aaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    ||||| ||||||||||| |||||||||||| |||||||| | ||| |||||||||||||||||| ||||    
T  2424444 aaaatataagcaaaaatttgttaacataagctgatgtatatggtacaaattttgaaccaaatacattaa 2424512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 320
Target Start/End: Original strand, 20185317 - 20185388
Alignment:
Q  249 ccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaat 320  Q
    |||||||||||  ||||||  ||||| |||||| ||||||||| ||| |||||||||||||||||| |||||    
T  20185317 ccaaaatgtaaataaaaatgagttaatataagtcgatgtattttgtacaaattttgaaccaaatacattaat 20185388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 9531017 - 9530948
Alignment:
Q  251 aaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaat 320  Q
    |||||||||||||||||  || || |||| ||| |||||||  ||||||||||||||||||||| |||||    
T  9531017 aaaatgtaagcaaaaatgagtcaatataaattggtgtatttgatataaattttgaaccaaatacattaat 9530948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 25467111 - 25467180
Alignment:
Q  250 caaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    ||||||||||||||||||   |||||||||||||||||||    |||||||||||||||| |||| ||||    
T  25467111 caaaatgtaagcaaaaatggattaacataagttgatgtatccgatataaattttgaaccacatacattaa 25467180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 319
Target Start/End: Complemental strand, 39030676 - 39030599
Alignment:
Q  242 ctccattccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    |||||| ||||||| |||||||||||  || |||| ||||| |||||||| ||| ||||||| |||||||||| ||||    
T  39030676 ctccatcccaaaatataagcaaaaattagtcaacaaaagttaatgtatttggtacaaatttttaaccaaatacattaa 39030599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 9956496 - 9956572
Alignment:
Q  243 tccattccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    ||||| |||||||||||| ||||||  || |||||| |||||||||| |  ||||||||||||| ||||||| ||||    
T  9956496 tccatcccaaaatgtaagtaaaaatgggtcaacatatgttgatgtatctgttataaattttgaatcaaatacattaa 9956572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 33498443 - 33498403
Alignment:
Q  273 aacataagttgatgtatttagtataaattttgaaccaaata 313  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  33498443 aacataagttgatgtattttgtacaaattttgaaccaaata 33498403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 33669925 - 33670001
Alignment:
Q  243 tccattccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    ||||| |||||||||||||||||||  || ||||||||||  ||||| | ||| ||||||| |||||||||| ||||    
T  33669925 tccatcccaaaatgtaagcaaaaatgggtcaacataagttagtgtatctggtacaaattttaaaccaaatacattaa 33670001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 12619724 - 12619661
Alignment:
Q  250 caaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaata 313  Q
    |||||| |||||||||||   | |||||||||||||||||||  ||||||||||||| ||||||    
T  12619724 caaaatataagcaaaaatggatcaacataagttgatgtatttgatataaattttgaatcaaata 12619661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 314
Target Start/End: Complemental strand, 30293486 - 30293417
Alignment:
Q  245 cattccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatac 314  Q
    |||| |||||| |||| ||||||  || |||||| ||||||||||||  ||||||||||||| |||||||    
T  30293486 catttcaaaatataagtaaaaatgagtcaacatatgttgatgtatttgatataaattttgaatcaaatac 30293417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 320
Target Start/End: Original strand, 51224 - 51296
Alignment:
Q  248 tccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaat 320  Q
    |||||||| |||||||||   ||| ||||||||||||||||||| ||||||||||||||| |||||| |||||    
T  51224 tccaaaatttaagcaaaagattgtcaacataagttgatgtatttggtataaattttgaactaaatacattaat 51296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 29797942 - 29798005
Alignment:
Q  247 ttccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaa 310  Q
    |||||||||||||||||||||  |||||||||| || |||||||| ||| ||||||||||||||    
T  29797942 ttccaaaatgtaagcaaaaatgagttaacataaatttatgtatttggtacaaattttgaaccaa 29798005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 9548077 - 9548117
Alignment:
Q  273 aacataagttgatgtatttagtataaattttgaaccaaata 313  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  9548077 aacataagttgatgtatttagtacaaattttgaaccaaata 9548117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 319
Target Start/End: Original strand, 35901037 - 35901109
Alignment:
Q  247 ttccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    ||||||||| |||||||||||  || |||||||||||||||| |||||| ||||||||| || ||||| ||||    
T  35901037 ttccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgagcccaatacattaa 35901109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 8777853 - 8777811
Alignment:
Q  271 ttaacataagttgatgtatttagtataaattttgaaccaaata 313  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  8777853 ttaacataagttaatgtatttaatataaattttgaaccaaata 8777811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 29110965 - 29111033
Alignment:
Q  251 aaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    ||||||||||||| |||| || || |||| |  |||||||| |||||||||||||||||||||| ||||    
T  29110965 aaaatgtaagcaataataggtcaatataaatgaatgtatttggtataaattttgaaccaaatacattaa 29111033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 37627916 - 37627976
Alignment:
Q  251 aaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaa 311  Q
    |||||||||| ||||||| ||||| ||||||||||||||||  || |||||||||| ||||    
T  37627916 aaaatgtaagtaaaaataagttaatataagttgatgtatttgatacaaattttgaatcaaa 37627976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 313
Target Start/End: Original strand, 9294588 - 9294629
Alignment:
Q  272 taacataagttgatgtatttagtataaattttgaaccaaata 313  Q
    |||||| ||||||||||||||||| ||||||||||| |||||    
T  9294588 taacattagttgatgtatttagtacaaattttgaactaaata 9294629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 320
Target Start/End: Original strand, 26914454 - 26914524
Alignment:
Q  249 ccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaat 320  Q
    |||||||||||||||||||  |  ||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  26914454 ccaaaatgtaagcaaaaatg-gacaacttaagttgatgtatttagtataaattttgaaccacatacattaat 26914524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 37331031 - 37330963
Alignment:
Q  251 aaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    |||||||||||||||||  |||||||||| |||| |||| ||||| ||||||||||||| |||| ||||    
T  37331031 aaaatgtaagcaaaaatgggttaacataaattgacgtatctagtacaaattttgaaccatatacattaa 37330963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 32221474 - 32221544
Alignment:
Q  249 ccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    |||||||||||||||||||   | | ||||| ||||||||||| ||| |||||||||||||||||| ||||    
T  32221474 ccaaaatgtaagcaaaaattgatcagcataaattgatgtatttggtacaaattttgaaccaaatacattaa 32221544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 320
Target Start/End: Complemental strand, 45610539 - 45610469
Alignment:
Q  250 caaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaat 320  Q
    |||||||||| ||||| |  ||||||||||||||||| ||||  ||||||| ||||||||||||| |||||    
T  45610539 caaaatgtaaacaaaatttagttaacataagttgatgaatttgatataaatcttgaaccaaatacattaat 45610469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 319
Target Start/End: Complemental strand, 18364280 - 18364204
Alignment:
Q  242 ctccattccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||| |   | ||||||||||| |||||| ||||    
T  18364280 ctccgttccaaaatgtaagcaaaaat-ggttaacataagttgatgtatctgacacaaattttgaacaaaatacattaa 18364204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 320
Target Start/End: Original strand, 29637439 - 29637508
Alignment:
Q  251 aaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaat 320  Q
    |||||||||| ||||||| || ||||||| || || |||||  || ||||||||||||||||||| ||||    
T  29637439 aaaatgtaagaaaaaataagtcaacataaattaatatatttgatacaaattttgaaccaaatactgtaat 29637508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 46733121 - 46733052
Alignment:
Q  251 aaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaat 320  Q
    |||||||||||||||||| || ||| |||| ||||| ||||  || |||||||||| ||||||| |||||    
T  46733121 aaaatgtaagcaaaaataagtcaacgtaagctgatgcatttgatacaaattttgaatcaaatacattaat 46733052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 319
Target Start/End: Complemental strand, 47783191 - 47783114
Alignment:
Q  242 ctccattccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    |||| ||||||||| |||||||||||  || ||||||||  ||||||| |  || |||||||||||||||||| ||||    
T  47783191 ctccgttccaaaatataagcaaaaatgagtcaacataagccgatgtatctgatacaaattttgaaccaaatacattaa 47783114  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 32729508 - 32729560
Alignment:
Q  251 aaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaatttt 303  Q
    ||||| |||||||||||| |||||||||| ||||| |||||| || |||||||    
T  32729508 aaaatataagcaaaaataagttaacataaattgatctatttaatacaaatttt 32729560  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 18731994 - 18732064
Alignment:
Q  249 ccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    ||||||| |||||||||||   | ||||||| ||||||||| | |||||||||||||||||||||| ||||    
T  18731994 ccaaaatataagcaaaaatggatcaacataaattgatgtatctggtataaattttgaaccaaatacattaa 18732064  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 320
Target Start/End: Original strand, 32652411 - 32652481
Alignment:
Q  250 caaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaat 320  Q
    ||||||||||| ||||||| || ||||||| ||| ||||||| ||| ||| |||||||||||||| |||||    
T  32652411 caaaatgtaagtaaaaataagtcaacataaattggtgtatttggtacaaactttgaaccaaatacattaat 32652481  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 44816572 - 44816503
Alignment:
Q  250 caaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    ||||||||||||||||||   |||| ||||  |||||||||| ||| |||||||||||||||||| ||||    
T  44816572 caaaatgtaagcaaaaatgaattaatataaactgatgtatttggtacaaattttgaaccaaatacattaa 44816503  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 3719982 - 3719918
Alignment:
Q  250 caaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatac 314  Q
    ||||||||||||||||||   | ||||||||||||||||| | ||| ||| ||||||||||||||    
T  3719982 caaaatgtaagcaaaaattgatcaacataagttgatgtatctcgtaaaaaatttgaaccaaatac 3719918  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 313
Target Start/End: Original strand, 23971191 - 23971253
Alignment:
Q  251 aaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaata 313  Q
    ||||| ||||||||||||  | || |||||||||||||||| ||| ||||||||||| |||||    
T  23971191 aaaatataagcaaaaataaatcaatataagttgatgtatttggtacaaattttgaactaaata 23971253  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 320
Target Start/End: Complemental strand, 36035351 - 36035281
Alignment:
Q  250 caaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaat 320  Q
    |||||| |||| |||||||  ||||||||||||||||| |||  |||||||||| || ||||||| |||||    
T  36035351 caaaatataagtaaaaataaattaacataagttgatgtttttgatataaattttaaatcaaataccttaat 36035281  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 319
Target Start/End: Original strand, 3769755 - 3769827
Alignment:
Q  247 ttccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    |||||||||| ||| ||||||  || |||| ||||||||||||||| || ||||||| ||| |||||| ||||    
T  3769755 ttccaaaatgcaagtaaaaatgagtcaacacaagttgatgtatttaatacaaattttaaactaaatacattaa 3769827  T

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Target: scaffold0034 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 95050 - 94981
Alignment:
Q  251 aaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaat 320  Q
    |||||||||  ||||||  || ||||||||||||||||||| ||| |||||||||||  ||||| |||||    
T  95050 aaaatgtaataaaaaattggtcaacataagttgatgtatttggtacaaattttgaacataatacattaat 94981  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 38015 - 37947
Alignment:
Q  251 aaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    ||||||||| ||||||   || || |||| ||||||||||| ||||||||||| |||||||||| ||||    
T  38015 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttaaaccaaatacattaa 37947  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 13278 - 13210
Alignment:
Q  251 aaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 319  Q
    |||||||||| |||||   ||||| |||||||||||||| | ||| ||||||| |||||||||| ||||    
T  13278 aaaatgtaagtaaaaacgagttaatataagttgatgtatcttgtacaaattttaaaccaaatacattaa 13210  T

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