View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20944_low_14 (Length: 377)

Name: NF20944_low_14
Description: NF20944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20944_low_14
NF20944_low_14
[»] chr1 (5 HSPs)
chr1 (195-373)||(14167929-14168111)
chr1 (1-102)||(14168200-14168302)
chr1 (295-328)||(26925118-26925151)
chr1 (295-328)||(33323912-33323945)
chr1 (295-328)||(50959523-50959556)
[»] chr7 (3 HSPs)
chr7 (244-376)||(24957709-24957841)
chr7 (295-328)||(46611516-46611549)
chr7 (299-339)||(1764473-1764513)
[»] chr8 (3 HSPs)
chr8 (295-356)||(11954568-11954629)
chr8 (295-352)||(1029712-1029769)
chr8 (295-328)||(10659195-10659228)
[»] scaffold0003 (1 HSPs)
scaffold0003 (295-331)||(353233-353269)
[»] chr6 (2 HSPs)
chr6 (295-354)||(6257245-6257303)
chr6 (295-329)||(8210027-8210061)
[»] scaffold0914 (1 HSPs)
scaffold0914 (295-340)||(793-838)
[»] chr2 (6 HSPs)
chr2 (5-74)||(945342-945410)
chr2 (295-328)||(5136204-5136237)
chr2 (295-328)||(9848126-9848159)
chr2 (295-360)||(12419505-12419570)
chr2 (295-360)||(12431565-12431630)
chr2 (295-328)||(18482109-18482142)
[»] chr4 (1 HSPs)
chr4 (295-331)||(44136827-44136863)


Alignment Details
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 195 - 373
Target Start/End: Complemental strand, 14168111 - 14167929
Alignment:
Q  195 ttttataaactataactcattatcttttaatgtgt----atattcatatttttcgaaagggtatggttctttaaaacggaaagggttttgtcactaatta 290  Q
    ||||||||| |||||| |||||||||||||||| |    ||||||||||||| ||||||||||| ||||||||||||  ||||||| |||||||||||||    
T  14168111 ttttataaattataacccattatcttttaatgtatgtatatattcatattttccgaaagggtattgttctttaaaacataaagggtcttgtcactaatta 14168012  T
Q  291 aagtttggactcatccctcgatctgggttcttacgcgtgtaattgaaatccgttgtgtttggtgacttgattattctaactct 373  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||| | ||||||||||||| ||||||||||||||||||    
T  14168011 aagtttggactcatccctcgatctgggtccttacgcgtgtatttgaaacctgttgtgtttggtggcttgattattctaactct 14167929  T

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Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 14168302 - 14168200
Alignment:
Q  1 aataaaaataagatgataatttagtggtttggtaggagaaaaaa-ttaaagaaaataacgataggaaaaacatgtatattcataaaatgatctaaatatc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14168302 aataaaaataagatgataatttagtggtttggtaggagaaaaaaattaaagaaaataacgataggaaaaacatgtatattcattaaatgatctaaatatc 14168203  T
Q  100 gtt 102  Q
    |||    
T  14168202 gtt 14168200  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 328
Target Start/End: Complemental strand, 26925151 - 26925118
Alignment:
Q  295 ttggactcatccctcgatctgggttcttacgcgt 328  Q
    ||||||||||||||||||||| ||||||||||||    
T  26925151 ttggactcatccctcgatctgagttcttacgcgt 26925118  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 328
Target Start/End: Original strand, 33323912 - 33323945
Alignment:
Q  295 ttggactcatccctcgatctgggttcttacgcgt 328  Q
    ||||||||||||||||||||| ||||||||||||    
T  33323912 ttggactcatccctcgatctgagttcttacgcgt 33323945  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 328
Target Start/End: Complemental strand, 50959556 - 50959523
Alignment:
Q  295 ttggactcatccctcgatctgggttcttacgcgt 328  Q
    ||||||||||||||||||||| ||||||||||||    
T  50959556 ttggactcatccctcgatctgagttcttacgcgt 50959523  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 376
Target Start/End: Complemental strand, 24957841 - 24957709
Alignment:
Q  244 cgaaagggtatggttctttaaaacggaaagggttttgtcactaattaaagtttggactcatccctcgatctgggttcttacgcgtgtaattgaaatccgt 343  Q
    |||||| |||||||||| |||| | ||||| || | |||||||||||| |||||||||||||||||||||| ||| |||||| |||||  |||||   ||    
T  24957841 cgaaagcgtatggttctgtaaacccgaaagagtctggtcactaattaacgtttggactcatccctcgatctaggtccttacgtgtgtatatgaaacttgt 24957742  T
Q  344 tgtgtttggtgacttgattattctaactctctg 376  Q
    ||||||||||| ||||| |||| | ||||||||    
T  24957741 tgtgtttggtggcttgactattatgactctctg 24957709  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 328
Target Start/End: Complemental strand, 46611549 - 46611516
Alignment:
Q  295 ttggactcatccctcgatctgggttcttacgcgt 328  Q
    ||||||||||||||||||||| ||||||||||||    
T  46611549 ttggactcatccctcgatctgagttcttacgcgt 46611516  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 1764513 - 1764473
Alignment:
Q  299 actcatccctcgatctgggttcttacgcgtgtaattgaaat 339  Q
    |||||||||||||||| ||||||||||||| | ||||||||    
T  1764513 actcatccctcgatcttggttcttacgcgtctgattgaaat 1764473  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 11954629 - 11954568
Alignment:
Q  295 ttggactcatccctcgatctgggttcttacgcgtgtaattgaaatccgttgtgtttggtgac 356  Q
    |||||||||||||| |||||| |||||||||||| |  ||||| ||||||||||||||||||    
T  11954629 ttggactcatccctggatctgagttcttacgcgtctgtttgaattccgttgtgtttggtgac 11954568  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 1029769 - 1029712
Alignment:
Q  295 ttggactcatccctcgatctgggttcttacgcgtgtaattgaaatccgttgtgtttgg 352  Q
    ||||||||||||| ||||||| |||||||||||| |  |||||  |||||||||||||    
T  1029769 ttggactcatcccacgatctgagttcttacgcgtatgtttgaatcccgttgtgtttgg 1029712  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 328
Target Start/End: Complemental strand, 10659228 - 10659195
Alignment:
Q  295 ttggactcatccctcgatctgggttcttacgcgt 328  Q
    ||||||||||||||||||||| ||||||||||||    
T  10659228 ttggactcatccctcgatctgagttcttacgcgt 10659195  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 353269 - 353233
Alignment:
Q  295 ttggactcatccctcgatctgggttcttacgcgtgta 331  Q
    ||||||||||||||||||||| |||||||||||||||    
T  353269 ttggactcatccctcgatctgagttcttacgcgtgta 353233  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 6257245 - 6257303
Alignment:
Q  295 ttggactcatccctcgatctgggttcttacgcgtgtaattgaaatccgttgtgtttggtg 354  Q
    ||||||||||||||||||||| |||||||||||| |  |||||| | |||||||||||||    
T  6257245 ttggactcatccctcgatctgagttcttacgcgtttgtttgaaa-ctgttgtgtttggtg 6257303  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 329
Target Start/End: Original strand, 8210027 - 8210061
Alignment:
Q  295 ttggactcatccctcgatctgggttcttacgcgtg 329  Q
    ||||||||||||||||||||| |||||||||||||    
T  8210027 ttggactcatccctcgatctgagttcttacgcgtg 8210061  T

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Target: scaffold0914 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0914
Description:

Target: scaffold0914; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 838 - 793
Alignment:
Q  295 ttggactcatccctcgatctgggttcttacgcgtgtaattgaaatc 340  Q
    ||||||||||||||||||||| |||||||| ||| | |||||||||    
T  838 ttggactcatccctcgatctgagttcttacacgtttgattgaaatc 793  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 945410 - 945342
Alignment:
Q  5 aaaataagatgataatttagtggtttggtaggagaaaaaattaaagaaaataacgataggaaaaacatgt 74  Q
    ||||||||||||| || ||||||||||||| ||| |||||| ||||||||| | ||| ||||| ||||||    
T  945410 aaaataagatgattatctagtggtttggtacgag-aaaaatgaaagaaaattatgattggaaatacatgt 945342  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 328
Target Start/End: Original strand, 5136204 - 5136237
Alignment:
Q  295 ttggactcatccctcgatctgggttcttacgcgt 328  Q
    ||||||||||||||||||||| ||||||||||||    
T  5136204 ttggactcatccctcgatctgagttcttacgcgt 5136237  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 328
Target Start/End: Original strand, 9848126 - 9848159
Alignment:
Q  295 ttggactcatccctcgatctgggttcttacgcgt 328  Q
    ||||||||||||||||||||| ||||||||||||    
T  9848126 ttggactcatccctcgatctgagttcttacgcgt 9848159  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 12419570 - 12419505
Alignment:
Q  295 ttggactcatccctcgatctgggttcttacgcgtgtaattgaaatccgttgtgtttggtgacttga 360  Q
    |||||||||||||| |||||| |||||||||||| |  |||||| |  |||||||||||| |||||    
T  12419570 ttggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtggcttga 12419505  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 12431630 - 12431565
Alignment:
Q  295 ttggactcatccctcgatctgggttcttacgcgtgtaattgaaatccgttgtgtttggtgacttga 360  Q
    |||||||||||||| |||||| |||||||||||| |  |||||| |  |||||||||||| |||||    
T  12431630 ttggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtggcttga 12431565  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 328
Target Start/End: Complemental strand, 18482142 - 18482109
Alignment:
Q  295 ttggactcatccctcgatctgggttcttacgcgt 328  Q
    ||||||||||||||||||||| ||||||||||||    
T  18482142 ttggactcatccctcgatctgagttcttacgcgt 18482109  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 44136827 - 44136863
Alignment:
Q  295 ttggactcatccctcgatctgggttcttacgcgtgta 331  Q
    ||||||||||||||||||| | |||||||||||||||    
T  44136827 ttggactcatccctcgatccgagttcttacgcgtgta 44136863  T

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